| Year |
Citation |
Score |
| 2019 |
Seyler SL, Kumar A, Thorpe MF, Beckstein O. Correction: Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways. Plos Computational Biology. 15: e1007136. PMID 31206513 DOI: 10.1371/Journal.Pcbi.1007136 |
0.467 |
|
| 2018 |
Butler BM, Kazan IC, Kumar A, Ozkan SB. Coevolving residues inform protein dynamics profiles and disease susceptibility of nSNVs. Plos Computational Biology. 14: e1006626. PMID 30496278 DOI: 10.1371/Journal.Pcbi.1006626 |
0.369 |
|
| 2016 |
Kumar A, Glembo TJ, Ozkan B. Loss in Allosteric Regulations through Structural Dynamics Lead to Disease Biophysical Journal. 110: 53a. DOI: 10.1016/J.Bpj.2015.11.351 |
0.362 |
|
| 2016 |
Seyler SL, Kumar A, Colburn T, Thorpe MF, Beckstein O. Quantifying Macromolecular Transition Paths with Path Similarity Analysis Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.2798 |
0.572 |
|
| 2015 |
Kumar A, Butler BM, Kumar S, Ozkan SB. Integration of structural dynamics and molecular evolution via protein interaction networks: a new era in genomic medicine. Current Opinion in Structural Biology. PMID 26684487 DOI: 10.1016/J.Sbi.2015.11.002 |
0.36 |
|
| 2015 |
Seyler SL, Kumar A, Thorpe MF, Beckstein O. Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways. Plos Computational Biology. 11: e1004568. PMID 26488417 DOI: 10.1371/Journal.Pcbi.1004568 |
0.577 |
|
| 2015 |
Kumar A, Campitelli P, Thorpe MF, Ozkan SB. Partial Unfoldingand Refolding for Structure Refinement: A Unified Approach of Geometric Simulations and Molecular Dynamics. Proteins. PMID 26476100 DOI: 10.1002/Prot.24947 |
0.555 |
|
| 2015 |
Kumar A, Glembo TJ, Ozkan SB. The Role of Conformational Dynamics and Allostery in the Disease Development of Human Ferritin. Biophysical Journal. PMID 26255589 DOI: 10.1016/J.Bpj.2015.06.060 |
0.36 |
|
| 2015 |
Zou T, Kumar A, Butler BM, Ozkan SB. 174 Mechanism of protein evolution: conformational dynamics and allostery. Journal of Biomolecular Structure & Dynamics. 33: 114. PMID 26103384 DOI: 10.1080/07391102.2015.1032811 |
0.341 |
|
| 2015 |
Ellenbroek WG, Hagh VF, Kumar A, Thorpe MF, van Hecke M. Rigidity loss in disordered systems: three scenarios. Physical Review Letters. 114: 135501. PMID 25884127 DOI: 10.1103/Physrevlett.114.135501 |
0.481 |
|
| 2015 |
Kumar A, Campitelli P, Banu Ozkan S, Thorpe MF. Physics Based Structure Refinement in Casp11 using Geometric Unfolding and Hierarchically Restrained Replica Exchange Molecular Dynamics Biophysical Journal. 108: 519a. DOI: 10.1016/J.Bpj.2014.11.2846 |
0.55 |
|
| 2015 |
Beckstein O, Seyler SL, Kumar A, Thorpe MF. Quantifying Macromolecular Conformational Transition Pathways Biophysical Journal. 108: 13a. DOI: 10.1016/J.Bpj.2014.11.096 |
0.558 |
|
| 2014 |
Kumar A, Sherrington D, Wilson M, Thorpe MF. Ring statistics of silica bilayers. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 26: 395401. PMID 25191795 DOI: 10.1088/0953-8984/26/39/395401 |
0.488 |
|
| 2013 |
Wilson M, Kumar A, Sherrington D, Thorpe MF. Modeling vitreous silica bilayers Physical Review B - Condensed Matter and Materials Physics. 87. DOI: 10.1103/Physrevb.87.214108 |
0.518 |
|
| 2013 |
Kumar A, Thorpe MF, Banu Ozkan S. Novel Physics-Based Protein Structure Refinement Method Biophysical Journal. 104: 229a. DOI: 10.1016/J.Bpj.2012.11.1291 |
0.538 |
|
| 2012 |
Kumar A, Wilson M, Thorpe MF. Amorphous graphene: a realization of Zachariasen's glass. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 24: 485003. PMID 23090073 DOI: 10.1088/0953-8984/24/48/485003 |
0.555 |
|
| 2012 |
Van Tuan D, Kumar A, Roche S, Ortmann F, Thorpe MF, Ordejon P. Insulating behavior of an amorphous graphene membrane Physical Review B - Condensed Matter and Materials Physics. 86. DOI: 10.1103/Physrevb.86.121408 |
0.521 |
|
| 2011 |
Li Y, Inam F, Kumar A, Thorpe MF, Drabold DA. Pentagonal puckering in a sheet of amorphous graphene Physica Status Solidi (B) Basic Research. 248: 2082-2086. DOI: 10.1002/Pssb.201147195 |
0.529 |
|
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