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Weiliang Chen, PhD - Publications

Affiliations: 
Okinawa Institute of Science and Technology, Onna-son, Okinawa-ken, Japan 
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Hepburn I, Lallouette J, Chen W, Gallimore AR, Nagasawa-Soeda SY, De Schutter E. Vesicle and reaction-diffusion hybrid modeling with STEPS. Communications Biology. 7: 573. PMID 38750123 DOI: 10.1038/s42003-024-06276-5  0.544
2022 Chen W, Carel T, Awile O, Cantarutti N, Castiglioni G, Cattabiani A, Del Marmol B, Hepburn I, King JG, Kotsalos C, Kumbhar P, Lallouette J, Melchior S, Schürmann F, De Schutter E. STEPS 4.0: Fast and memory-efficient molecular simulations of neurons at the nanoscale. Frontiers in Neuroinformatics. 16: 883742. PMID 36387588 DOI: 10.3389/fninf.2022.883742  0.572
2022 Chen W, Hepburn I, Martyushev A, De Schutter E. Modeling Neurons in 3D at the Nanoscale. Advances in Experimental Medicine and Biology. 1359: 3-24. PMID 35471533 DOI: 10.1007/978-3-030-89439-9_1  0.503
2017 Chen W, De Schutter E. Parallel STEPS: Large Scale Stochastic Spatial Reaction-Diffusion Simulation with High Performance Computers. Frontiers in Neuroinformatics. 11: 13. PMID 28239346 DOI: 10.3389/fninf.2017.00013  0.552
2017 Chen W, De Schutter E. Time to Bring Single Neuron Modeling into 3D. Neuroinformatics. PMID 28058618 DOI: 10.1007/s12021-016-9321-x  0.477
2016 Sharpee TO, Destexhe A, Kawato M, Sekulić V, Skinner FK, Wójcik DK, Chintaluri C, Cserpán D, Somogyvári Z, Kim JK, Kilpatrick ZP, Bennett MR, Josić K, Elices I, Arroyo D, ... ... Chen W, et al. 25th Annual Computational Neuroscience Meeting: CNS-2016 Bmc Neuroscience. 17: 54. PMID 27534393 DOI: 10.1186/S12868-016-0283-6  0.649
2015 Hepburn I, Chen W, De Schutter E. Accurate approximation to stochastic reaction diffusion on unstructured meshes in STEPS Bmc Neuroscience. 16. DOI: 10.1186/1471-2202-16-S1-P55  0.501
2015 Chen W, Hepburn I, De Schutter E. Implementation of parallel spatial stochastic reaction-diffusion simulation in STEPS Bmc Neuroscience. 16. DOI: 10.1186/1471-2202-16-S1-P54  0.525
2014 Anwar H, Roome CJ, Nedelescu H, Chen W, Kuhn B, De Schutter E. Dendritic diameters affect the spatial variability of intracellular calcium dynamics in computer models. Frontiers in Cellular Neuroscience. 8: 168. PMID 25100945 DOI: 10.3389/Fncel.2014.00168  0.507
2014 Chen W, De Schutter E. Python-based geometry preparation and simulation visualization toolkits for STEPS. Frontiers in Neuroinformatics. 8: 37. PMID 24782754 DOI: 10.3389/fninf.2014.00037  0.499
2014 Simon CM, Hepburn I, Chen W, De Schutter E. The role of dendritic spine morphology in the compartmentalization and delivery of surface receptors. Journal of Computational Neuroscience. 36: 483-97. PMID 24113809 DOI: 10.1007/S10827-013-0482-4  0.468
2014 Hepburn I, Chen W, De Schutter E. Accurate approximation and MPI parallelization of spatial stochastic reaction-diffusion in STEPS Bmc Neuroscience. 15. DOI: 10.1186/1471-2202-15-S1-P177  0.503
2013 Anwar H, Hepburn I, Nedelescu H, Chen W, De Schutter E. Stochastic calcium mechanisms cause dendritic calcium spike variability. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 15848-67. PMID 24089492 DOI: 10.1523/Jneurosci.1722-13.2013  0.466
2013 Chen W, Hepburn I, De Schutter E. Dendritic Volume Mesh Reconstruction for STEPS: How Does Mesh Quality Affect Stochastic Reaction-Diffusion Simulation? Bmc Neuroscience. 14. DOI: 10.1186/1471-2202-14-S1-P95  0.522
2013 Jain A, Hepburn I, Chen W, De Schutter E. Initial state of single spines affects probability of induction of cerebellar long term depression in a stochastic model Bmc Neuroscience. 14. DOI: 10.1186/1471-2202-14-S1-P92  0.425
2012 Hepburn I, Chen W, Wils S, De Schutter E. STEPS: efficient simulation of stochastic reaction-diffusion models in realistic morphologies. Bmc Systems Biology. 6: 36. PMID 22574658 DOI: 10.1186/1752-0509-6-36  0.535
2012 Chen W, De Schutter E. Improving Data Caching of the STochastic Engine for Pathway Simulation (STEPS) Bmc Neuroscience. 13. DOI: 10.1186/1471-2202-13-S1-P154  0.464
2011 Chen W, Maex R, Adams R, Steuber V, Calcraft L, Davey N. Clustering predicts memory performance in networks of spiking and non-spiking neurons. Frontiers in Computational Neuroscience. 5: 14. PMID 21519373 DOI: 10.3389/Fncom.2011.00014  0.692
2011 Chen W, Hepburn I, De Schutter E. Improving performance of the STochastic Engine for Pathway Simulation (STEPS) Bmc Neuroscience. 12. DOI: 10.1186/1471-2202-12-S1-P58  0.466
2011 Hepburn I, Chen W, De Schutter E. SBML and MathML support for the stochastic reaction-diffusion simulator STEPS Bmc Neuroscience. 12. DOI: 10.1186/1471-2202-12-S1-P57  0.518
2011 Song Z, Postma M, Chen W, Coca D, Billings S, Hardie RC, Juusola M, De Schutter E. Does calcium diffusional global feedback leads to slow light adaptation in Drosophila photoreceptors? - A 3D biophysical modelling approach Bmc Neuroscience. 12. DOI: 10.1186/1471-2202-12-S1-P56  0.488
2010 Chen W, Hepburn I, De Schutter E. Tetrahedral mesh generation and visualization for stochastic reaction-diffusion simulation Bmc Neuroscience. 11. DOI: 10.1186/1471-2202-11-S1-P70  0.507
2009 Chen W, Maex R, Adams R, Steuber V, Calcraft L, Davey N. Connection strategies in associative memory models with spiking and non-spiking neurons Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5495: 42-51. DOI: 10.1007/978-3-642-04921-7_5  0.69
2008 Chen W, Adams R, Calcraft L, Steuber V, Davey N. Connectivity graphs and the performance of sparse associative memory models Proceedings of the International Joint Conference On Neural Networks. 2742-2749. DOI: 10.1109/IJCNN.2008.4634183  0.559
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