| Year |
Citation |
Score |
| 2023 |
Kumar G, Gan HM, Popielarz H, Steele J, Parthasarathy A, Hudson AO, Savka MA. Endophytic bacteria associated with wild-type banana seed (): whole genome sequencing. Microbiology Resource Announcements. e0065023. PMID 37921458 DOI: 10.1128/MRA.00650-23 |
0.325 |
|
| 2020 |
Adegbaju MS, Morenikeji OB, Borrego EJ, Hudson AO, Thomas BN. Differential Evolution of α-Glucan Water Dikinase (GWD) in Plants. Plants (Basel, Switzerland). 9. PMID 32867090 DOI: 10.3390/plants9091101 |
0.337 |
|
| 2020 |
Steiner KK, Parthasarathy A, Wong NH, Cavanaugh NT, Chu J, Hudson AO. Isolation and whole-genome sequencing of Pseudomonas sp. RIT 623, a slow-growing bacterium endowed with antibiotic properties. Bmc Research Notes. 13: 370. PMID 32746897 DOI: 10.1186/S13104-020-05216-W |
0.375 |
|
| 2020 |
Reilly ER, Abajorga MK, Kiser C, Mohd Redzuan NH, Haidar Z, Adams LE, Diaz R, Pinzon JA, Hudson AO, Black LW, Hsia RC, Weintraub ST, Thomas JA. A Cut above the Rest: Characterization of the Assembly of a Large Viral Icosahedral Capsid. Viruses. 12. PMID 32635654 DOI: 10.3390/V12070725 |
0.307 |
|
| 2020 |
Weatherhead AW, Crowther JM, Horne CR, Meng Y, Coombes D, Currie MJ, Watkin SAJ, Adams LE, Parthasarathy A, Dobson RCJ, Hudson AO. Structure-Function Studies of the Antibiotic Target l,l-Diaminopimelate Aminotransferase from Reveal an Unusual Oligomeric Structure. Biochemistry. PMID 32478518 DOI: 10.1021/Acs.Biochem.0C00185 |
0.386 |
|
| 2020 |
Adams LE, Rynkiewicz P, Babbitt GA, Mortensen JS, North RA, Dobson RCJ, Hudson AO. Comparative Molecular Dynamics Simulations Provide Insight Into Antibiotic Interactions: A Case Study Using the Enzyme L,L-Diaminopimelate Aminotransferase (DapL). Frontiers in Molecular Biosciences. 7: 46. PMID 32274387 DOI: 10.3389/Fmolb.2020.00046 |
0.395 |
|
| 2019 |
Gan HM, Szegedi E, Fersi R, Chebil S, Kovács L, Kawaguchi A, Hudson AO, Burr TJ, Savka MA. Insight Into the Microbial Co-occurrence and Diversity of 73 Grapevine () Crown Galls Collected Across the Northern Hemisphere. Frontiers in Microbiology. 10: 1896. PMID 31456792 DOI: 10.3389/Fmicb.2019.01896 |
0.351 |
|
| 2019 |
Parthasarathy A, Savka MA, Hudson AO. The Synthesis and Role of β-Alanine in Plants. Frontiers in Plant Science. 10: 921. PMID 31379903 DOI: 10.3389/Fpls.2019.00921 |
0.368 |
|
| 2019 |
Crowther JM, Cross PJ, Oliver MR, Leeman MM, Bartl AJ, Weatherhead AW, North RA, Donovan KA, Griffin MDW, Suzuki H, Hudson AO, Kasanmascheff M, Dobson RCJ. Structure-function analyses of two plant -diaminopimelate decarboxylase isoforms reveal that active-site gating provides stereochemical control. The Journal of Biological Chemistry. PMID 30962284 DOI: 10.1074/Jbc.Ra118.006825 |
0.427 |
|
| 2018 |
Parthasarathy A, Cross PJ, Dobson RCJ, Adams LE, Savka MA, Hudson AO. A Three-Ring Circus: Metabolism of the Three Proteogenic Aromatic Amino Acids and Their Role in the Health of Plants and Animals. Frontiers in Molecular Biosciences. 5: 29. PMID 29682508 DOI: 10.3389/Fmolb.2018.00029 |
0.414 |
|
| 2017 |
Gan HM, Thomas BN, Cavanaugh NT, Morales GH, Mayers AN, Savka MA, Hudson AO. Whole genome sequencing of Rhodotorula mucilaginosa isolated from the chewing stick (Distemonanthus benthamianus): insights into Rhodotorula phylogeny, mitogenome dynamics and carotenoid biosynthesis. Peerj. 5: e4030. PMID 29158974 DOI: 10.7717/Peerj.4030 |
0.407 |
|
| 2017 |
Gan HM, Eng WWH, Barton MK, Adams LE, Samsudin NA, Bartl AJ, Hudson AO, Savka MA, Thomas JA. Whole-Genome Sequences of Salmonella enterica subsp. enterica Serovar Typhimurium Strains TT6675 and TT9097 Employed in the Isolation and Characterization of a Giant Phage Mutant Collection. Genome Announcements. 5. PMID 28839032 DOI: 10.1128/Genomea.00857-17 |
0.342 |
|
| 2017 |
Grant Pearce F, Hudson AO, Loomes K, Dobson RC. Dihydrodipicolinate Synthase: Structure, Dynamics, Function, and Evolution. Sub-Cellular Biochemistry. 83: 271-289. PMID 28271480 DOI: 10.1007/978-3-319-46503-6_10 |
0.455 |
|
| 2016 |
Cala AR, Nadeau MT, Abendroth J, Staker BL, Reers AR, Weatherhead AW, Dobson RC, Myler PJ, Hudson AO. The crystal structure of dihydrodipicolinate reductase from the human-pathogenic bacterium Bartonella henselae strain Houston-1 at 2.3 Å resolution. Acta Crystallographica. Section F, Structural Biology Communications. 72: 885-891. PMID 27917836 DOI: 10.1107/S2053230X16018525 |
0.341 |
|
| 2016 |
Gan HM, Dailey LK, Halliday N, Williams P, Hudson AO, Savka MA. Genome sequencing-assisted identification and the first functional validation of N-acyl-homoserine-lactone synthases from the Sphingomonadaceae family. Peerj. 4: e2332. PMID 27635318 DOI: 10.7717/Peerj.2332 |
0.383 |
|
| 2016 |
Thomas JA, Benítez Quintana AD, Bosch MA, Coll De Peña A, Aguilera E, Coulibaly A, Wu W, Osier MV, Hudson AO, Weintraub ST, Black LW. Identification of essential genes in the Salmonella phage SPN3US reveals novel insights into giant phage head structure and assembly. Journal of Virology. PMID 27605673 DOI: 10.1128/Jvi.01492-16 |
0.376 |
|
| 2016 |
Hudson AO, Harkness TC, Savka MA. Functional Complementation Analysis (FCA): A Laboratory Exercise Designed and Implemented to Supplement the Teaching of Biochemical Pathways. Journal of Visualized Experiments : Jove. PMID 27403640 DOI: 10.3791/53850 |
0.428 |
|
| 2016 |
Naqvi KF, Patin D, Wheatley MS, Savka MA, Dobson RC, Gan HM, Barreteau H, Blanot D, Mengin-Lecreulx D, Hudson AO. Identification and Partial Characterization of a Novel UDP-N-Acetylenolpyruvoylglucosamine Reductase/UDP-N-Acetylmuramate:l-Alanine Ligase Fusion Enzyme from Verrucomicrobium spinosum DSM 4136(T). Frontiers in Microbiology. 7: 362. PMID 27047475 DOI: 10.3389/Fmicb.2016.00362 |
0.441 |
|
| 2016 |
Lai WX, Gan HM, Hudson AO, Savka MA. Whole-Genome Sequencing Reveals a New Genospecies of Methylobacterium sp. GXS13, Isolated from Vitis vinifera L. Xylem Sap. Genome Announcements. 4. PMID 26847900 DOI: 10.1128/Genomea.01695-15 |
0.402 |
|
| 2016 |
Naqvi KF, Staker BL, Dobson RC, Serbzhinskiy D, Sankaran B, Myler PJ, Hudson AO. Cloning, expression, purification, crystallization and X-ray diffraction analysis of dihydrodipicolinate synthase from the human pathogenic bacterium Bartonella henselae strain Houston-1 at 2.1 Å resolution. Acta Crystallographica. Section F, Structural Biology Communications. 72: 2-9. PMID 26750477 DOI: 10.1107/S2053230X15023213 |
0.339 |
|
| 2016 |
Babbitt GA, Coppola EE, Alawad MA, Hudson AO. Can all heritable biology really be reduced to a single dimension? Gene. 578: 162-8. PMID 26723512 DOI: 10.1016/J.Gene.2015.12.043 |
0.326 |
|
| 2016 |
Coleman MG, Hudson AO. Isolation, Total Synthesis, and Biological Activities of 1-Aminocyclopropane-1-Carboxylic Acid (ACC) Containing Natural Compounds Studies in Natural Products Chemistry. 47: 405-430. DOI: 10.1016/B978-0-444-63603-4.00013-9 |
0.328 |
|
| 2015 |
Tran PN, Tan NE, Lee YP, Gan HM, Polter SJ, Dailey LK, Hudson AO, Savka MA. Whole-Genome Sequence and Classification of 11 Endophytic Bacteria from Poison Ivy (Toxicodendron radicans). Genome Announcements. 3. PMID 26586879 DOI: 10.1128/Genomea.01319-15 |
0.369 |
|
| 2015 |
Polter SJ, Caraballo AA, Lee YP, Eng WW, Gan HM, Wheatley MS, Savka MA, Thomas BN, Hudson AO. Isolation, Identification, Whole-Genome Sequencing, and Annotation of Four Bacillus Species, B. anthracis RIT375, B. circulans RIT379, B. altitudinis RIT380, and B. megaterium RIT381, from Internal Stem Tissue of the Insulin Plant Costus igneus. Genome Announcements. 3. PMID 26227604 DOI: 10.1128/Genomea.00847-15 |
0.371 |
|
| 2015 |
Eng WW, Gan HM, Gan HY, Hudson AO, Savka MA. Whole-Genome Sequence and Annotation of Octopine-Utilizing Pseudomonas kilonensis (Previously P. fluorescens) Strain 1855-344. Genome Announcements. 3. PMID 25977435 DOI: 10.1128/Genomea.00463-15 |
0.365 |
|
| 2015 |
Savka MA, Dailey L, Popova M, Mihaylova R, Merritt B, Masek M, Le P, Nor SR, Ahmad M, Hudson AO, Bankova V. Chemical composition and disruption of quorum sensing signaling in geographically diverse United States propolis. Evidence-Based Complementary and Alternative Medicine : Ecam. 2015: 472593. PMID 25960752 DOI: 10.1155/2015/472593 |
0.32 |
|
| 2015 |
Gan HY, Gan HM, Savka MA, Triassi AJ, Wheatley MS, Naqvi KF, Foxhall TE, Anauo MJ, Baldwin ML, Burkhardt RN, O'Bryon IG, Dailey LK, Busairi NI, Keith RC, Khair MH, ... ... Hudson AO, et al. Whole-Genome Sequencing and Annotation of Bacillus safensis RIT372 and Pseudomonas oryzihabitans RIT370 from Capsicum annuum (Bird's Eye Chili) and Capsicum chinense (Yellow Lantern Chili), Respectively. Genome Announcements. 3. PMID 25883290 DOI: 10.1128/Genomea.00288-15 |
0.37 |
|
| 2014 |
Gan HM, Gan HY, Ahmad NH, Aziz NA, Hudson AO, Savka MA. Whole genome sequencing and analysis reveal insights into the genetic structure, diversity and evolutionary relatedness of luxI and luxR homologs in bacteria belonging to the Sphingomonadaceae family. Frontiers in Cellular and Infection Microbiology. 4: 188. PMID 25621282 DOI: 10.3389/Fcimb.2014.00188 |
0.395 |
|
| 2014 |
Gan HY, Gan HM, Tarasco AM, Busairi NI, Barton HA, Hudson AO, Savka MA. Whole-Genome Sequences of Five Oligotrophic Bacteria Isolated from Deep within Lechuguilla Cave, New Mexico. Genome Announcements. 2. PMID 25377711 DOI: 10.1128/Genomea.01133-14 |
0.376 |
|
| 2014 |
Triassi AJ, Wheatley MS, Savka MA, Gan HM, Dobson RC, Hudson AO. L,L-diaminopimelate aminotransferase (DapL): a putative target for the development of narrow-spectrum antibacterial compounds. Frontiers in Microbiology. 5: 509. PMID 25309529 DOI: 10.3389/Fmicb.2014.00509 |
0.417 |
|
| 2014 |
Oliver MR, Crowther JM, Leeman MM, Kessans SA, North RA, Donovan KA, Griffin MD, Suzuki H, Hudson AO, Kasanmascheff M, Dobson RC. The purification, crystallization and preliminary X-ray diffraction analysis of two isoforms of meso-diaminopimelate decarboxylase from Arabidopsis thaliana. Acta Crystallographica. Section F, Structural Biology Communications. 70: 663-8. PMID 24817733 DOI: 10.1107/S2053230X14007699 |
0.434 |
|
| 2014 |
Gan HY, Gan HM, Savka MA, Triassi AJ, Wheatley MS, Smart LB, Fabio ES, Hudson AO. Whole-genome sequences of 13 endophytic bacteria isolated from shrub willow (salix) grown in geneva, new york. Genome Announcements. 2. PMID 24812212 DOI: 10.1128/Genomea.00288-14 |
0.382 |
|
| 2014 |
Gan HM, Triassi AJ, Wheatley MS, Savka MA, Hudson AO. High-Quality Draft Whole-Genome Sequences of Three Strains of Enterobacter Isolated from Jamaican Dioscorea cayenensis (Yellow Yam). Genome Announcements. 2. PMID 24625871 DOI: 10.1128/Genomea.00170-14 |
0.379 |
|
| 2014 |
McKinnie SM, Rodriguez-Lopez EM, Vederas JC, Crowther JM, Suzuki H, Dobson RC, Leustek T, Triassi AJ, Wheatley MS, Hudson AO. Differential response of orthologous L,L-diaminopimelate aminotransferases (DapL) to enzyme inhibitory antibiotic lead compounds. Bioorganic & Medicinal Chemistry. 22: 523-30. PMID 24268540 DOI: 10.1016/J.Bmc.2013.10.055 |
0.65 |
|
| 2013 |
Gan HM, Hudson AO, Rahman AY, Chan KG, Savka MA. Comparative genomic analysis of six bacteria belonging to the genus Novosphingobium: insights into marine adaptation, cell-cell signaling and bioremediation. Bmc Genomics. 14: 431. PMID 23809012 DOI: 10.1186/1471-2164-14-431 |
0.408 |
|
| 2013 |
McGroty SE, Pattaniyil DT, Patin D, Blanot D, Ravichandran AC, Suzuki H, Dobson RC, Savka MA, Hudson AO. Biochemical characterization of UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-2,6-diaminopimelate ligase (MurE) from Verrucomicrobium spinosum DSM 4136(T.). Plos One. 8: e66458. PMID 23785498 DOI: 10.1371/Journal.Pone.0066458 |
0.454 |
|
| 2013 |
North RA, Kessans SA, Atkinson SC, Suzuki H, Watson AJ, Burgess BR, Angley LM, Hudson AO, Varsani A, Griffin MD, Fairbanks AJ, Dobson RC. Cloning, expression, purification, crystallization and preliminary X-ray diffraction studies of N-acetylneuraminate lyase from methicillin-resistant Staphylococcus aureus. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 69: 306-12. PMID 23519810 DOI: 10.1107/S1744309113003060 |
0.353 |
|
| 2012 |
Gan HM, McGroty SE, Chew TH, Chan KG, Buckley LJ, Savka MA, Hudson AO. Whole-genome sequence of Enterobacter sp. strain SST3, an endophyte isolated from Jamaican sugarcane (Saccharum sp.) stalk tissue. Journal of Bacteriology. 194: 5981-2. PMID 23045495 DOI: 10.1128/Jb.01469-12 |
0.356 |
|
| 2012 |
Gan HM, Chew TH, Hudson AO, Savka MA. Genome sequence of Methylobacterium sp. strain GXF4, a xylem-associated bacterium isolated from Vitis vinifera L. grapevine. Journal of Bacteriology. 194: 5157-8. PMID 22933776 DOI: 10.1128/Jb.01201-12 |
0.382 |
|
| 2012 |
Gan HM, Chew TH, Hudson AO, Savka MA. Genome sequence of Novosphingobium sp. strain Rr 2-17, a nopaline crown gall-associated bacterium isolated from Vitis vinifera L. grapevine. Journal of Bacteriology. 194: 5137-8. PMID 22933764 DOI: 10.1128/Jb.01159-12 |
0.371 |
|
| 2012 |
Nachar VR, Savka FC, McGroty SE, Donovan KA, North RA, Dobson RC, Buckley LJ, Hudson AO. Genomic and Biochemical Analysis of the Diaminopimelate and Lysine Biosynthesis Pathway in Verrucomicrobium spinosum: Identification and Partial Characterization of L,L-Diaminopimelate Aminotransferase and UDP-N-Acetylmuramoylalanyl-D-glutamyl-2,6-meso-Diaminopimelate Ligase. Frontiers in Microbiology. 3: 183. PMID 22783236 DOI: 10.3389/Fmicb.2012.00183 |
0.47 |
|
| 2011 |
Bulman Z, Le P, Hudson AO, Savka MA. A novel property of propolis (bee glue): anti-pathogenic activity by inhibition of N-acyl-homoserine lactone mediated signaling in bacteria. Journal of Ethnopharmacology. 138: 788-97. PMID 22063726 DOI: 10.1016/J.Jep.2011.10.029 |
0.331 |
|
| 2011 |
Dobson RC, Girón I, Hudson AO. L,L-diaminopimelate aminotransferase from Chlamydomonas reinhardtii: a target for algaecide development. Plos One. 6: e20439. PMID 21633707 DOI: 10.1371/Journal.Pone.0020439 |
0.409 |
|
| 2011 |
Hudson AO, Klartag A, Gilvarg C, Dobson RC, Marques FG, Leustek T. Dual diaminopimelate biosynthesis pathways in Bacteroides fragilis and Clostridium thermocellum. Biochimica Et Biophysica Acta. 1814: 1162-8. PMID 21616177 DOI: 10.1016/J.Bbapap.2011.04.019 |
0.661 |
|
| 2011 |
Hudson AO, Girón I, Dobson RC. Crystallization and preliminary X-ray diffraction analysis of L,L-diaminopimelate aminotransferase (DapL) from Chlamydomonas reinhardtii. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 67: 140-3. PMID 21206046 DOI: 10.1107/S174430911004844X |
0.355 |
|
| 2010 |
Prabhu PR, Hudson AO. Identification and Partial Characterization of an L-Tyrosine Aminotransferase (TAT) from Arabidopsis thaliana. Biochemistry Research International. 2010: 549572. PMID 21188077 DOI: 10.1155/2010/549572 |
0.449 |
|
| 2009 |
Gan HM, Buckley L, Szegedi E, Hudson AO, Savka MA. Identification of an rsh gene from a Novosphingobium sp. necessary for quorum-sensing signal accumulation. Journal of Bacteriology. 191: 2551-60. PMID 19201802 DOI: 10.1128/Jb.01692-08 |
0.442 |
|
| 2008 |
Hudson AO, Gilvarg C, Leustek T. Biochemical and phylogenetic characterization of a novel diaminopimelate biosynthesis pathway in prokaryotes identifies a diverged form of LL-diaminopimelate aminotransferase. Journal of Bacteriology. 190: 3256-63. PMID 18310350 DOI: 10.1128/Jb.01381-07 |
0.68 |
|
| 2007 |
Martin MN, Saladores PH, Lambert E, Hudson AO, Leustek T. Localization of members of the gamma-glutamyl transpeptidase family identifies sites of glutathione and glutathione S-conjugate hydrolysis. Plant Physiology. 144: 1715-32. PMID 17545509 DOI: 10.1104/Pp.106.094409 |
0.625 |
|
| 2006 |
McCoy AJ, Adams NE, Hudson AO, Gilvarg C, Leustek T, Maurelli AT. L,L-diaminopimelate aminotransferase, a trans-kingdom enzyme shared by Chlamydia and plants for synthesis of diaminopimelate/lysine. Proceedings of the National Academy of Sciences of the United States of America. 103: 17909-14. PMID 17093042 DOI: 10.1073/Pnas.0608643103 |
0.679 |
|
| 2006 |
Hudson AO, Singh BK, Leustek T, Gilvarg C. An LL-diaminopimelate aminotransferase defines a novel variant of the lysine biosynthesis pathway in plants. Plant Physiology. 140: 292-301. PMID 16361515 DOI: 10.1104/Pp.105.072629 |
0.695 |
|
| 2005 |
Lee M, Martin MN, Hudson AO, Lee J, Muhitch MJ, Leustek T. Methionine and threonine synthesis are limited by homoserine availability and not the activity of homoserine kinase in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. 41: 685-96. PMID 15703056 DOI: 10.1111/J.1365-313X.2004.02329.X |
0.686 |
|
| 2005 |
Hudson AO, Bless C, Macedo P, Chatterjee SP, Singh BK, Gilvarg C, Leustek T. Biosynthesis of lysine in plants: evidence for a variant of the known bacterial pathways. Biochimica Et Biophysica Acta. 1721: 27-36. PMID 15652176 DOI: 10.1016/J.Bbagen.2004.09.008 |
0.69 |
|
| 2002 |
Morgan CA, Hudson A, Konopka A, Nakatsu CH. Analyses of microbial activity in biomass-recycle reactors using denaturing gradient gel electrophoresis of 16S rDNA and 16S rRNA PCR products. Canadian Journal of Microbiology. 48: 333-41. PMID 12030706 DOI: 10.1139/W02-029 |
0.304 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2020 |
Coll De Peña A, Miller A, Lentz CJ, Hill N, Parthasarathy A, Hudson AO, Lapizco-Encinas BH. Creation of an electrokinetic characterization library for the detection and identification of biological cells. Analytical and Bioanalytical Chemistry. PMID 32322954 DOI: 10.1007/S00216-020-02621-9 |
0.293 |
|
| 2019 |
Parthasarathy A, Adams LE, Savka FC, Hudson AO. The gene annotated by the locus tag At3g08860 encodes alanine aminotransferase. Plant Direct. 3: e00171. PMID 31549019 DOI: 10.1002/pld3.171 |
0.289 |
|
| 2020 |
Babbitt GA, Lynch ML, McCoy M, Fokoue EP, Hudson AO. Function and evolution of B-Raf loop dynamics relevant to cancer recurrence under drug inhibition. Journal of Biomolecular Structure & Dynamics. 1-16. PMID 32897175 DOI: 10.1080/07391102.2020.1815578 |
0.288 |
|
| 2014 |
Babbitt GA, Alawad MA, Schulze KV, Hudson AO. Synonymous codon bias and functional constraint on GC3-related DNA backbone dynamics in the prokaryotic nucleoid. Nucleic Acids Research. 42: 10915-26. PMID 25200075 DOI: 10.1093/Nar/Gku811 |
0.279 |
|
| 2021 |
Gaeth VA, Domondon CJ, Podbielski PA, Aswad VX, Wrightstone EA, Wong NH, Burke WH, Melita J, Murray KM, Hudson AO. Whole-Genome Sequencing and Annotation of 10 Endophytic and Epiphytic Bacteria Isolated from Lolium arundinaceum. Microbiology Resource Announcements. 10. PMID 33986094 DOI: 10.1128/MRA.00317-21 |
0.277 |
|
| 2018 |
Parthasarathy A, Gan HM, Wong NH, Savka MA, Steiner KK, Henry KR, Hudson AO. Isolation and genomic characterization of six endophytic bacteria isolated from sp (sugarcane): Insights into antibiotic, secondary metabolite and quorum sensing metabolism. Journal of Genomics. 6: 117-121. PMID 30310525 DOI: 10.7150/jgen.28335 |
0.275 |
|
| 2019 |
Mantravadi PK, Kalesh KA, Dobson RCJ, Hudson AO, Parthasarathy A. The Quest for Novel Antimicrobial Compounds: Emerging Trends in Research, Development, and Technologies. Antibiotics (Basel, Switzerland). 8. PMID 30682820 DOI: 10.3390/Antibiotics8010008 |
0.275 |
|
| 2018 |
Parthasarathy A, Wong NH, Cavanaugh NT, Steiner KK, Wengert PC, Savka MA, Hudson AO. Whole-Genome Sequencing and Annotation of Exiguobacterium sp. RIT 452, an Antibiotic-Producing Strain Isolated from a Pond Located on the Campus of the Rochester Institute of Technology. Microbiology Resource Announcements. 7. PMID 30533762 DOI: 10.1128/MRA.01341-18 |
0.27 |
|
| 2020 |
Gan HM, Wengert P, Barton HA, Hudson AO, Savka MA. Insight into the resistome and quorum sensing system of a divergent isolate from an untouched site of the Lechuguilla Cave. Access Microbiology. 2: acmi000089. PMID 34568753 DOI: 10.1099/acmi.0.000089 |
0.266 |
|
| 2020 |
Gan HM, Parthasarathy A, Henry KR, Savka MA, Thomas BN, Hudson AO. Whole-Genome Sequencing of sp. Strain RIT388, a Potential Oral Opportunistic Pathogen Isolated from a Chewing Stick (). Microbiology Resource Announcements. 9. PMID 32107300 DOI: 10.1128/MRA.01468-19 |
0.266 |
|
| 2022 |
Parthasarathy A, Miranda RR, Eddingsaas NC, Chu J, Freezman IM, Tyler AC, Hudson AO. Polystyrene Degradation by sp. RIT 594: Preliminary Evidence for a Pathway Containing an Atypical Oxygenase. Microorganisms. 10. PMID 36014041 DOI: 10.3390/microorganisms10081619 |
0.261 |
|
| 2019 |
Gan HM, Wengert PC, Barton HA, Hudson AO, Savka MA. Draft Genome Sequences of Five Isolated from Lechuguilla Cave, New Mexico, USA, and Insights into Taxonomy and Quorum Sensing. Microbiology Resource Announcements. 8. PMID 31582457 DOI: 10.1128/MRA.00913-19 |
0.26 |
|
| 2018 |
Babbitt GA, Coppola EE, Mortensen JS, Ekeren PX, Viola C, Goldblatt D, Hudson AO. Triplet-Based Codon Organization Optimizes the Impact of Synonymous Mutation on Nucleic Acid Molecular Dynamics. Journal of Molecular Evolution. PMID 29344693 DOI: 10.1007/S00239-018-9828-X |
0.259 |
|
| 2021 |
Wengert PC, Wong NH, Barton HA, Gan HM, Hudson AO, Savka MA. Genomic characterization of bacteria from the ultra-oligotrophic Madison aquifer: insight into the archetypical LuxI/LuxR and identification of novel LuxR solos. Bmc Research Notes. 14: 175. PMID 33964980 DOI: 10.1186/s13104-021-05589-6 |
0.248 |
|
| 2019 |
Parthasarathy A, Wong NH, Burns ND, Aziz-Dickerson AH, Dweh J, Buchanan D, Savka MA, Hudson AO. Isolation, Whole-Genome Sequencing, and Annotation of sp. RIT 621, a Strain That Produces Antibiotic Compounds against Escherichia coli ATCC 25922 and Bacillus subtilis BGSC 168. Microbiology Resource Announcements. 8. PMID 31023801 DOI: 10.1128/MRA.00329-19 |
0.247 |
|
| 2019 |
Morenikeji OB, Hawkes ME, Hudson AO, Thomas BN. Computational Network Analysis Identifies Evolutionarily Conserved miRNA Gene Interactions Potentially Regulating Immune Response in Bovine Trypanosomosis. Frontiers in Microbiology. 10: 2010. PMID 31555241 DOI: 10.3389/Fmicb.2019.02010 |
0.243 |
|
| 2023 |
Gan HM, Penix TS, Wengert PC, Wong NH, Hudson AO, Kumar G, Savka MA. Whole-Genome Sequence of Endophytic Bacteria Associated with Poison Ivy Vine (Toxicodendron radicans). Microbiology Resource Announcements. e0123222. PMID 36920211 DOI: 10.1128/mra.01232-22 |
0.24 |
|
| 2022 |
Kesel E, Hudson AO, Osier MV. Whole-Genome Sequence, Assembly and Annotation of an Invasive Plant, (Amur Honeysuckle). Plants (Basel, Switzerland). 11. PMID 36501292 DOI: 10.3390/plants11233253 |
0.24 |
|
| 2019 |
Parthasarathy A, Tyler AC, Hoffman MJ, Savka MA, Hudson AO. Is Plastic Pollution in Aquatic and Terrestrial Environments a Driver for the Transmission of Pathogens and the Evolution of Antibiotic Resistance? Environmental Science & Technology. PMID 30702278 DOI: 10.1021/Acs.Est.8B07287 |
0.233 |
|
| 2021 |
Parthasarathy A, Borrego EJ, Savka MA, Dobson RCJ, Hudson AO. Amino acid-derived defense metabolites from plants: A potential source to facilitate novel antimicrobial development. The Journal of Biological Chemistry. 100438. PMID 33610552 DOI: 10.1016/j.jbc.2021.100438 |
0.23 |
|
| 2020 |
Thomas SG, Glover MA, Parthasarathy A, Wong NH, Shipman PA, Hudson AO. Expression of a Shiga-Like Toxin during Plastic Colonization by Two Multidrug-Resistant Bacteria, RIT668 and RIT669, Isolated from Endangered Turtles (). Microorganisms. 8. PMID 32752245 DOI: 10.3390/microorganisms8081172 |
0.227 |
|
| 2019 |
Babbitt GA, Hudson A, Adams L. Comparative Molecular Dynamics Dynamics of the BRAF Activation Loop Reveals a Biophysical Mechanism of Cancer Recurrence Under Drug Inhibition Biophysical Journal. 116. DOI: 10.1016/J.Bpj.2018.11.2336 |
0.226 |
|
| 2022 |
Mozrall AR, Miranda RR, Kumar G, Wadsworth CB, Hudson AO. Isolation, Whole-Genome Sequencing, and Annotation of Two Antibiotic-Producing and -Resistant Bacteria, Enterobacter roggenkampii RIT 834 and Acinetobacter pittii RIT 835, from Disposable Masks Collected from the Environment. Microbiology Resource Announcements. e0075722. PMID 36094212 DOI: 10.1128/mra.00757-22 |
0.222 |
|
| 2017 |
Kumar HK, Gan HM, Tan MH, Eng WW, Barton HA, Hudson AO, Savka MA. Genomic characterization of eight Ensifer strains isolated from pristine caves and a whole genome phylogeny of Ensifer (Sinorhizobium). Journal of Genomics. 5: 12-15. PMID 28138345 DOI: 10.7150/jgen.17863 |
0.218 |
|
| 2019 |
Parthasarathy A, Wong NH, Weiss AN, Tian S, Ali SE, Cavanaugh NT, Chinsky TM, Cramer CE, Gupta A, Jha R, Johnson LK, Tuason ED, Klafehn LM, Krishnadas V, Musich RJ, ... ... Hudson AO, et al. SELfies and CELLfies: Whole Genome Sequencing and Annotation of Five Antibiotic Resistant Bacteria Isolated from the Surfaces of Smartphones, An Inquiry Based Laboratory Exercise in a Genomics Undergraduate Course at the Rochester Institute of Technology. Journal of Genomics. 7: 26-30. PMID 30820259 DOI: 10.7150/jgen.31911 |
0.211 |
|
| 2020 |
Wong NH, Rosato AJ, Rose YM, Penix TS, Fung JB, Vanitski AL, Goossen CJ, Bradshaw SG, Lopp SM, Pennington AD, Darmohray VM, Steiner KK, Kersey GE, Brylow KB, Pridmore MV, ... ... Hudson AO, et al. Isolation and Whole-Genome Sequencing of 12 Mushroom-Associated Bacterial Strains: an Inquiry-Based Laboratory Exercise in a Genomics Course at the Rochester Institute of Technology. Microbiology Resource Announcements. 9. PMID 32029553 DOI: 10.1128/MRA.01457-19 |
0.21 |
|
| 2024 |
Tuytschaevers S, Aden L, Greene Z, Nixon C, Shaw W, Hatch D, Kumar G, Miranda RR, Hudson AO. Isolation, whole-genome sequencing, and annotation of two antibiotic-producing and antibiotic-resistant bacteria, Pantoea rodasii RIT 836 and Pseudomonas endophytica RIT 838, collected from the environment. Plos One. 19: e0293943. PMID 38412159 DOI: 10.1371/journal.pone.0293943 |
0.2 |
|
| 2022 |
Raisman JC, Fiore MA, Tomin L, Adjei JKO, Aswad VX, Chu J, Domondon CJ, Donahue BA, Masciotti CA, McGrath CG, Melita J, Podbielski PA, Schreiner MR, Trumpore LJ, Wengert PC, ... ... Hudson AO, et al. Evolutionary paths to macrolide resistance in a Neisseria commensal converge on ribosomal genes through short sequence duplications. Plos One. 17: e0262370. PMID 35025928 DOI: 10.1371/journal.pone.0262370 |
0.192 |
|
| 2022 |
Reilly E, Alfaro JA, Borzelleri AR, Branco EG, Conklin DC, Held ES, Kulee FZ, Kuzma AJ, Langdon N, Lasko AM, Neri ST, Nichols JA, Olawuyi TR, Park E, Rugullies K, ... ... Hudson AO, et al. Draft Genome Sequences of Three Antibiotic-Producing Soil Bacteria, Staphylococcus pasteuri WAM01, Peribacillus butanolivorans WAM04, and Micrococcus yunnanensis WAM06, with Growth-Inhibiting Effects against Commensal Strains. Microbiology Resource Announcements. e0062722. PMID 36094179 DOI: 10.1128/mra.00627-22 |
0.191 |
|
| 2021 |
Schroeter MN, Gazali SJ, Parthasarathy A, Wadsworth CB, Miranda RR, Thomas BN, Hudson AO. Isolation, Whole-Genome Sequencing, and Annotation of Three Unclassified Antibiotic-Producing Bacteria, Enterobacter sp. Strain RIT 637, Pseudomonas sp. Strain RIT 778, and sp. Strain RIT 780. Microbiology Resource Announcements. 10: e0086321. PMID 34854720 DOI: 10.1128/MRA.00863-21 |
0.188 |
|
| 2021 |
Cavanaugh NT, Parthasarathy A, Wong NH, Steiner KK, Chu J, Adjei J, Hudson AO. Exiguobacterium sp. is endowed with antibiotic properties against Gram positive and negative bacteria. Bmc Research Notes. 14: 230. PMID 34103082 DOI: 10.1186/s13104-021-05644-2 |
0.15 |
|
| 2023 |
Freezman IM, Parthasarathy A, Miranda RR, Watts LM, Hudson AO. Chromatographic isolation of potentially novel antibiotic compounds produced by Yimella sp. RIT 621. Bmc Research Notes. 16: 114. PMID 37349752 DOI: 10.1186/s13104-023-06393-0 |
0.138 |
|
| 2021 |
Rynkiewicz P, Babbitt GA, Cui F, Hudson AO, Lynch ML. A comparative survey of Betacoronavirus binding dynamics relevant to the functional evolution of the highly transmissible SARS-CoV-2 variant N501Y. Biorxiv : the Preprint Server For Biology. PMID 33501438 DOI: 10.1101/2020.09.11.293258 |
0.135 |
|
| 2020 |
Fiore MA, Raisman JC, Wong NH, Hudson AO, Wadsworth CB. Exploration of the Resistome Reveals Resistance Mechanisms in Commensals That May Be Acquired by through Horizontal Gene Transfer. Antibiotics (Basel, Switzerland). 9. PMID 33007823 DOI: 10.3390/antibiotics9100656 |
0.135 |
|
| 2021 |
Rynkiewicz P, Lynch ML, Cui F, Hudson AO, Babbitt GA. Functional binding dynamics relevant to the evolution of zoonotic spillovers in endemic and emergent strains. Journal of Biomolecular Structure & Dynamics. 1-19. PMID 34286673 DOI: 10.1080/07391102.2021.1953604 |
0.129 |
|
| 2020 |
Thomas SG, Abajorga M, Glover MA, Wengert PC, Parthasarathy A, Savka MA, Wadsworth CB, Shipman PA, Hudson AO. RIT668 and RIT669-Potential Zoonotic Pathogens Isolated from Spotted Turtles. Microorganisms. 8. PMID 33212916 DOI: 10.3390/microorganisms8111805 |
0.127 |
|
| 2024 |
Kumar G, Gan HM, Wengert P, Penix T, Parthasarathy A, Hudson AO, Savka MA. Whole-genome sequencing of four culturable endophytic bacteria from German hardneck garlic cloves ( L.). Microbiology Resource Announcements. e0122523. PMID 38470029 DOI: 10.1128/mra.01225-23 |
0.12 |
|
| 2024 |
Mak DA, Dunn S, Coombes D, Carere CR, Allison JR, Nock V, Hudson AO, Dobson RCJ. Enzyme Kinetics Analysis: An online tool for analyzing enzyme initial rate data and teaching enzyme kinetics. Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology. PMID 38400827 DOI: 10.1002/bmb.21823 |
0.12 |
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