Nicolas Philippe - Publications

Affiliations: 
Univ. Montpellier 2, France 
Area:
Transcriptomic, Genomic, Next Generation Sequencer, RNA-Sequencing, Bioinformatic, Cancer

14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Yauy K, Lecoquierre F, Baert-Desurmont S, Trost D, Boughalem A, Luscan A, Costa JM, Geromel V, Raymond L, Richard P, Coutant S, Broutin M, Lanos R, Fort Q, Cackowski S, ... ... Philippe N, et al. Genome Alert!: A standardized procedure for genomic variant reinterpretation and automated gene-phenotype reassessment in clinical routine. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 35311657 DOI: 10.1016/j.gim.2022.02.008  0.334
2017 Rufflé F, Audoux J, Boureux A, Beaumeunier S, Gaillard JB, Bou Samra E, Megarbane A, Cassinat B, Chomienne C, Alves R, Riquier S, Gilbert N, Lemaitre JM, Bacq-Daian D, Bougé AL, ... Philippe N, et al. New chimeric RNAs in acute myeloid leukemia. F1000research. 6. PMID 29623188 DOI: 10.12688/F1000Research.11352.1  0.509
2017 Audoux J, Philippe N, Chikhi R, Salson M, Gallopin M, Gabriel M, Le Coz J, Drouineau E, Commes T, Gautheret D. DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition. Genome Biology. 18: 243. PMID 29284518 DOI: 10.1186/S13059-017-1372-2  0.474
2017 Audoux J, Salson M, Grosset CF, Beaumeunier S, Holder JM, Commes T, Philippe N. SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines. Bmc Bioinformatics. 18: 428. PMID 28969586 DOI: 10.1186/S12859-017-1831-5  0.44
2016 Beaumeunier S, Audoux J, Boureux A, Ruffle F, Commes T, Philippe N, Alves R. On the evaluation of the fidelity of supervised classifiers in the prediction of chimeric RNAs. Biodata Mining. 9: 34. PMID 27822312 DOI: 10.1186/S13040-016-0112-6  0.469
2016 Bouckenheimer J, Assou S, Riquier S, Hou C, Philippe N, Sansac C, Lavabre-Bertrand T, Commes T, Lemaître JM, Boureux A, De Vos J. Long non-coding RNAs in human early embryonic development and their potential in ART. Human Reproduction Update. PMID 27655590 DOI: 10.1093/Humupd/Dmw035  0.389
2014 Philippe N, Bou Samra E, Boureux A, Mancheron A, Rufflé F, Bai Q, De Vos J, Rivals E, Commes T. Combining DGE and RNA-sequencing data to identify new polyA+ non-coding transcripts in the human genome. Nucleic Acids Research. 42: 2820-32. PMID 24357408 DOI: 10.1093/Nar/Gkt1300  0.696
2013 Assou S, Al-edani T, Haouzi D, Philippe N, Lecellier CH, Piquemal D, Commes T, Aït-Ahmed O, Dechaud H, Hamamah S. MicroRNAs: new candidates for the regulation of the human cumulus-oocyte complex. Human Reproduction (Oxford, England). 28: 3038-49. PMID 23904466 DOI: 10.1093/Humrep/Det321  0.318
2013 Philippe N, Salson M, Commes T, Rivals E. CRAC: an integrated approach to the analysis of RNA-seq reads. Genome Biology. 14: R30. PMID 23537109 DOI: 10.1186/Gb-2013-14-3-R30  0.656
2012 Philippe N, Salson M, Commes T, Rivals E. A combinatorial and integrated method to analyse RNA-seq reads Embnet.Journal. 17: 11. DOI: 10.14806/Ej.17.B.290  0.697
2012 Philippe N, Ruffle F, Bou-Samra E, Boureux A, Commes T, Rivals E. Digital gene expression data, cross-species conservation and noncoding RNA Embnet.Journal. 17: 32. DOI: 10.14806/Ej.17.B.288  0.68
2011 Philippe N, Salson M, Lecroq T, Léonard M, Commes T, Rivals E. Querying large read collections in main memory: a versatile data structure. Bmc Bioinformatics. 12: 242. PMID 21682852 DOI: 10.1186/1471-2105-12-242  0.659
2010 Philippe N, Ruffle F, Bou-Samra, Boureux, Commes T, Rivals E. R76: Séquençage d’ARN, conservation et ARN non codants Bulletin Du Cancer. 97. DOI: 10.1016/S0007-4551(15)30993-0  0.531
2009 Philippe N, Boureux A, Bréhélin L, Tarhio J, Commes T, Rivals E. Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity. Nucleic Acids Research. 37: e104. PMID 19531739 DOI: 10.1093/Nar/Gkp492  0.676
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