Patrick P. Dennis - Publications

Affiliations: 
University of British Columbia, Vancouver, Vancouver, BC, Canada 

84 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Lui LM, Uzilov AV, Bernick DL, Corredor A, Lowe TM, Dennis PP. Methylation guide RNA evolution in archaea: structure, function and genomic organization of 110 C/D box sRNA families across six Pyrobaculum species. Nucleic Acids Research. PMID 29771354 DOI: 10.1093/Nar/Gky284  0.462
2015 Patrick M, Dennis PP, Ehrenberg M, Bremer H. Free RNA polymerase in Escherichia coli. Biochimie. 119: 80-91. PMID 26482806 DOI: 10.1016/J.Biochi.2015.10.015  0.445
2015 Dennis PP, Tripp V, Lui L, Lowe T, Randau L. C/D box sRNA-guided 2'-O-methylation patterns of archaeal rRNA molecules. Bmc Genomics. 16: 632. PMID 26296872 DOI: 10.1186/S12864-015-1839-Z  0.459
2014 Fange D, Mellenius H, Dennis PP, Ehrenberg M. Thermodynamic modeling of variations in the rate of RNA chain elongation of E. coli rrn operons. Biophysical Journal. 106: 55-64. PMID 24411237 DOI: 10.1016/j.bpj.2013.11.4487  0.417
2013 Ehrenberg M, Bremer H, Dennis PP. Medium-dependent control of the bacterial growth rate. Biochimie. 95: 643-58. PMID 23228516 DOI: 10.1016/J.Biochi.2012.11.012  0.388
2012 Bernick DL, Cox CL, Dennis PP, Lowe TM. Comparative genomic and transcriptional analyses of CRISPR systems across the genus Pyrobaculum. Frontiers in Microbiology. 3: 251. PMID 22811677 DOI: 10.3389/Fmicb.2012.00251  0.379
2012 Bernick DL, Dennis PP, Lui LM, Lowe TM. Diversity of Antisense and Other Non-Coding RNAs in Archaea Revealed by Comparative Small RNA Sequencing in Four Pyrobaculum Species. Frontiers in Microbiology. 3: 231. PMID 22783241 DOI: 10.3389/Fmicb.2012.00231  0.514
2012 Bernick DL, Dennis PP, Höchsmann M, Lowe TM. Discovery of Pyrobaculum small RNA families with atypical pseudouridine guide RNA features. Rna (New York, N.Y.). 18: 402-11. PMID 22282340 DOI: 10.1261/Rna.031385.111  0.6
2009 Ehrenberg M, Dennis PP, Bremer H. Maximum rrn promoter activity in Escherichia coli at saturating concentrations of free RNA polymerase. Biochimie. 92: 12-20. PMID 19835927 DOI: 10.1016/J.Biochi.2009.10.002  0.371
2009 Dennis PP, Ehrenberg M, Fange D, Bremer H. Varying rate of RNA chain elongation during rrn transcription in Escherichia coli. Journal of Bacteriology. 191: 3740-6. PMID 19329648 DOI: 10.1128/Jb.00128-09  0.455
2008 Bremer H, Dennis PP. Modulation of Chemical Composition and Other Parameters of the Cell at Different Exponential Growth Rates. Ecosal Plus. 3. PMID 26443740 DOI: 10.1128/ecosal.5.2.3  0.39
2006 Omer AD, Zago M, Chang A, Dennis PP. Probing the structure and function of an archaeal C/D-box methylation guide sRNA. Rna (New York, N.Y.). 12: 1708-20. PMID 16861619 DOI: 10.1261/Rna.31506  0.744
2005 Dennis PP, Omer A. Small non-coding RNAs in Archaea. Current Opinion in Microbiology. 8: 685-94. PMID 16256421 DOI: 10.1016/J.Mib.2005.10.013  0.772
2005 Zago MA, Dennis PP, Omer AD. The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus. Molecular Microbiology. 55: 1812-28. PMID 15752202 DOI: 10.1111/J.1365-2958.2005.04505.X  0.776
2004 Dennis PP, Ehrenberg M, Bremer H. Control of rRNA synthesis in Escherichia coli: a systems biology approach. Microbiology and Molecular Biology Reviews : Mmbr. 68: 639-68. PMID 15590778 DOI: 10.1128/Mmbr.68.4.639-668.2004  0.421
2004 Ziesche SM, Omer AD, Dennis PP. RNA-guided nucleotide modification of ribosomal and non-ribosomal RNAs in Archaea. Molecular Microbiology. 54: 980-93. PMID 15522081 DOI: 10.1111/J.1365-2958.2004.04319.X  0.774
2004 Bremer H, Dennis P, Ehrenberg M. Free RNA polymerase and modeling global transcription in Escherichia coli. Biochimie. 85: 597-609. PMID 12829377 DOI: 10.1016/S0300-9084(03)00105-6  0.413
2004 Zhang X, Dennis P, Ehrenberg M, Bremer H. Kinetic properties of rrn promoters in Escherichia coli. Biochimie. 84: 981-96. PMID 12504278 DOI: 10.1016/S0300-9084(02)00010-X  0.435
2003 Omer AD, Ziesche S, Decatur WA, Fournier MJ, Dennis PP. RNA-modifying machines in archaea. Molecular Microbiology. 48: 617-29. PMID 12694609 DOI: 10.1046/J.1365-2958.2003.03483.X  0.757
2002 Omer AD, Ziesche S, Ebhardt H, Dennis PP. In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex. Proceedings of the National Academy of Sciences of the United States of America. 99: 5289-94. PMID 11959980 DOI: 10.1073/Pnas.082101999  0.776
2001 Dennis PP, Omer A, Lowe T. A guided tour: small RNA function in Archaea. Molecular Microbiology. 40: 509-19. PMID 11359559 DOI: 10.1046/J.1365-2958.2001.02381.X  0.766
2001 Shepherd N, Dennis P, Bremer H. Cytoplasmic RNA Polymerase in Escherichia coli. Journal of Bacteriology. 183: 2527-34. PMID 11274112 DOI: 10.1128/Jb.183.8.2527-2534.2001  0.554
2000 Ng WV, Kennedy SP, Mahairas GG, Berquist B, Pan M, Shukla HD, Lasky SR, Baliga NS, Thorsson V, Sbrogna J, Swartzell S, Weir D, Hall J, Dahl TA, Welti R, ... ... Dennis PP, et al. Genome sequence of Halobacterium species NRC-1. Proceedings of the National Academy of Sciences of the United States of America. 97: 12176-81. PMID 11016950 DOI: 10.1073/Pnas.190337797  0.694
2000 Liang ST, Xu YC, Dennis P, Bremer H. mRNA composition and control of bacterial gene expression. Journal of Bacteriology. 182: 3037-44. PMID 10809680 DOI: 10.1128/Jb.182.11.3037-3044.2000  0.332
2000 Omer AD, Lowe TM, Russell AG, Ebhardt H, Eddy SR, Dennis PP. Homologs of small nucleolar RNAs in Archaea. Science (New York, N.Y.). 288: 517-22. PMID 10775111 DOI: 10.1126/Science.288.5465.517  0.78
2000 Yee J, Mowatt MR, Dennis PP, Nash TE. Transcriptional analysis of the glutamate dehydrogenase gene in the primitive eukaryote, Giardia lamblia. Identification of a primordial gene promoter. The Journal of Biological Chemistry. 275: 11432-9. PMID 10753960 DOI: 10.1074/Jbc.275.15.11432  0.437
1999 Liang S, Bipatnath M, Xu Y, Chen S, Dennis P, Ehrenberg M, Bremer H. Activities of constitutive promoters in Escherichia coli. Journal of Molecular Biology. 292: 19-37. PMID 10493854 DOI: 10.1006/Jmbi.1999.3056  0.432
1999 Liang ST, Ehrenberg M, Dennis P, Bremer H. Decay of rplN and lacZ mRNA in Escherichia coli. Journal of Molecular Biology. 288: 521-38. PMID 10329160 DOI: 10.1006/Jmbi.1999.2710  0.311
1999 Klenk HP, Meier TD, Durovic P, Schwass V, Lottspeich F, Dennis PP, Zillig W. RNA polymerase of Aquifex pyrophilus: implications for the evolution of the bacterial rpoBC operon and extremely thermophilic bacteria. Journal of Molecular Evolution. 48: 528-41. PMID 10198119 DOI: 10.1007/Pl00006496  0.569
1998 Dennis PP, Ziesche S, Mylvaganam S. Transcription analysis of two disparate rRNA operons in the halophilic archaeon Haloarcula marismortui. Journal of Bacteriology. 180: 4804-13. PMID 9733681 DOI: 10.1128/Jb.180.18.4804-4813.1998  0.468
1998 Liang S, Dennis PP, Bremer H. Expression of lacZ from the Promoter of theEscherichia coli spc Operon Cloned into Vectors Carrying the W205 trp-lac Fusion Journal of Bacteriology. 180: 6090-6100. DOI: 10.1128/Jb.180.23.6090-6100.1998  0.354
1997 Russell AG, de Sa MM, Dennis PP. A U3-like small nucleolar RNA in Archaea. Science (New York, N.Y.). 277: 1189. PMID 9297234 DOI: 10.1126/science.277.5330.1185d  0.458
1997 Dennis PP. Ancient ciphers: translation in Archaea. Cell. 89: 1007-10. PMID 9215623 DOI: 10.1016/S0092-8674(00)80288-3  0.497
1996 Liao D, Lurz R, Dobrinski B, Dennis PP. A NusG-like protein from Thermotoga maritima binds to DNA and RNA. Journal of Bacteriology. 178: 4089-98. PMID 8763936 DOI: 10.1128/Jb.178.14.4089-4098.1996  0.471
1996 Shimmin LC, Dennis PP. Conserved sequence elements involved in regulation of ribosomal protein gene expression in halophilic archaea. Journal of Bacteriology. 178: 4737-41. PMID 8755911 DOI: 10.1128/Jb.178.15.4737-4741.1996  0.443
1996 Potter S, Durovic P, Russell A, Wang X, de Jong-Wong D, Dennis PP. Preribosomal RNA processing in archaea: characterization of the RNP endonuclease mediated processing of precursor 16S rRNA in the thermoacidophile Sulfolobus acidocaldarius. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 73: 813-23. PMID 8721997 DOI: 10.1139/O95-089  0.596
1995 Potter S, Durovic P, Dennis PP. Ribosomal RNA precursor processing by a eukaryotic U3 small nucleolar RNA-like molecule in an archaeon. Science (New York, N.Y.). 268: 1056-60. PMID 7538698 DOI: 10.1126/Science.7538698  0.6
1994 Durovic P, Dennis PP. Separate pathways for excision and processing of 16S and 23S rRNA from the primary rRNA operon transcript from the hyperthermophilic archaebacterium Sulfolobus acldocaldarius: similarities to eukaryotic rRNA processing. Molecular Microbiology. 13: 229-242. PMID 28776805 DOI: 10.1111/J.1365-2958.1994.Tb00418.X  0.51
1994 Durovic P, Kutay U, Schleper C, Dennis PP. Strain identification and 5S rRNA gene characterization of the hyperthermophilic archaebacterium Sulfolobus acidocaldarius. Journal of Bacteriology. 176: 514-7. PMID 8288546 DOI: 10.1128/Jb.176.2.514-517.1994  0.383
1994 Liao D, Dennis PP. Molecular phylogenies based on ribosomal protein L11, L1, L10, and L12 sequences Journal of Molecular Evolution. 38: 405-419. PMID 8007008 DOI: 10.1007/Bf00163157  0.331
1994 Chow J, Dennis PP. Coupling between mRNA synthesis and mRNA stability in Escherichia coli Molecular Microbiology. 11: 919-931. PMID 7517486 DOI: 10.1111/J.1365-2958.1994.Tb00371.X  0.365
1993 Joshi P, Dennis PP. Structure, function, and evolution of the family of superoxide dismutase proteins from halophilic archaebacteria. Journal of Bacteriology. 175: 1572-9. PMID 8449866 DOI: 10.1128/Jb.175.6.1572-1579.1993  0.389
1993 Joshi P, Dennis PP. Characterization of paralogous and orthologous members of the superoxide dismutase gene family from genera of the halophilic archaebacteria. Journal of Bacteriology. 175: 1561-71. PMID 8449865 DOI: 10.1128/Jb.175.6.1561-1571.1993  0.426
1993 Yee J, Dennis PP. The NADP-dependent glutamate dehydrogenase of Giardia lamblia: a study of function, gene structure, and expression Systematic and Applied Microbiology. 16: 759-767. DOI: 10.1016/S0723-2020(11)80350-4  0.546
1990 Newton CH, Shimmin LC, Yee J, Dennis PP. A family of genes encode the multiple forms of the Saccharomyces cerevisiae ribosomal proteins equivalent to the Escherichia coli L12 protein and a single form of the L10-equivalent ribosomal protein. Journal of Bacteriology. 172: 579-88. PMID 2404943 DOI: 10.1128/jb.172.2.579-588.1990  0.367
1990 Newton CH, Shimmin LC, Yee J, Dennis PP. A family of genes encode the multiple forms of the Saccharomyces cerevisiae ribosomal proteins equivalent to the Escherichia coli L12 protein and a single form of the L10-equivalent ribosomal protein. Journal of Bacteriology. 172: 3535. PMID 2188966 DOI: 10.1128/Jb.172.6.3535.1990  0.465
1990 Downing WL, Sullivan SL, Gottesman ME, Dennis PP. Sequence and transcriptional pattern of the essential Escherichia coli secE-nusG operon. Journal of Bacteriology. 172: 1621-7. PMID 2137819 DOI: 10.1128/Jb.172.3.1621-1627.1990  0.452
1990 May BP, Dennis PP. Unusual evolution of a superoxide dismutase-like gene from the extremely halophilic archaebacterium Halobacterium cutirubrum. Journal of Bacteriology. 172: 3725-9. PMID 1694523 DOI: 10.1128/Jb.172.7.3725-3729.1990  0.36
1989 Mevarech M, Hirsch-Twizer S, Goldman S, Yakobson E, Eisenberg H, Dennis PP. Isolation and characterization of the rRNA gene clusters of Halobacterium marismortui. Journal of Bacteriology. 171: 3479-85. PMID 2722756 DOI: 10.1128/jb.171.6.3479-3485.1989  0.32
1989 May BP, Tam P, Dennis PP. The expression of the superoxide dismutase gene in Halobacterium cutirubrum and Halobacterium volcanii. Canadian Journal of Microbiology. 35: 171-5. PMID 2720491 DOI: 10.1139/M89-026  0.407
1989 Shimmin LC, Ramirez C, Matheson AT, Dennis PP. Sequence Alignment and Evolutionary Comparison of the L10 Equivalent and L12 Equivalent Ribosomal Proteins from Archaebacteria, Eubacteria, and Eucaryotes Journal of Molecular Evolution. 29: 448-462. PMID 2515294 DOI: 10.1007/Bf02602915  0.395
1989 Ramirez C, Shimmin LC, Newton CH, Matheson AT, Dennis PP. Structure and evolution of the L11, L1, L10, and L12 equivalent ribosomal proteins in eubacteria, archaebacteria, and eucaryotes. Canadian Journal of Microbiology. 35: 234-44. PMID 2497941 DOI: 10.1139/M89-036  0.381
1989 Shimmin LC, Dennis PP. Characterization of the L11, L1, L10 and L12 equivalent ribosomal protein gene cluster of the halophilic archaebacterium Halobacterium cutirubrum. The Embo Journal. 8: 1225-1235. DOI: 10.1002/J.1460-2075.1989.Tb03496.X  0.43
1987 Downing WL, Dennis PP. Transcription products from the rplKAJL-rpoBC gene cluster. Journal of Molecular Biology. 194: 609-20. PMID 2443706 DOI: 10.1016/0022-2836(87)90238-5  0.43
1986 Evans S, Dennis PP. Promoter activity and transcript mapping in the regulatory region for genes encoding ribosomal protein S15 and polynucleotide phosphorylase of Escherichia coli. Gene. 40: 15-22. PMID 3005122 DOI: 10.1016/0378-1119(85)90019-8  0.405
1986 Dennis PP. Multiple promoters for the transcription of the ribosomal RNA gene cluster in Halobacterium cutirubrum. Journal of Molecular Biology. 186: 457-61. PMID 2418207 DOI: 10.1016/0022-2836(85)90117-2  0.54
1986 Chant J, Hui I, De Jong-Wong D, Shimmin L, Dennis PP. The protein synthesizing machinery of the archaebacterium Halobacterium cutirubrum: Molecular characterization Systematic and Applied Microbiology. 7: 106-114. DOI: 10.1016/S0723-2020(86)80132-1  0.567
1986 Chant J, Dennis P. Archaebacteria: transcription and processing of ribosomal RNA sequences in Halobacterium cutirubrum. The Embo Journal. 5: 1091-1097. DOI: 10.1002/J.1460-2075.1986.Tb04327.X  0.55
1985 Dennis PP, Nene V, Glass RE. Autogenous posttranscriptional regulation of RNA polymerase beta and beta' subunit synthesis in Escherichia coli. Journal of Bacteriology. 161: 803-6. PMID 3881415 DOI: 10.1128/jb.161.2.803-806.1985  0.308
1981 Little R, Fiil NP, Dennis PP. Transcriptional and post-transcriptional control of ribosomal protein and ribonucleic acid polymerase genes. Journal of Bacteriology. 147: 25-35. PMID 7016843 DOI: 10.1128/jb.147.1.25-35.1981  0.454
1981 Delcuve G, Downing W, Lewis H, Dennis PP. Nucleotide sequence of the proximal portion of the RNA polymerase beta subunit gene of Escherichia coli. Gene. 11: 367-73. PMID 7011900 DOI: 10.1016/0378-1119(80)90076-1  0.525
1980 Fiil NP, Friesen JD, Downing WL, Dennis PP. Post-transcriptional regulatory mutants in a ribosomal protein-RNA polymerase operon of E. coli. Cell. 19: 837-44. PMID 6991124 DOI: 10.1016/0092-8674(80)90074-4  0.589
1979 Post LE, Strycharz GD, Nomura M, Lewis H, Dennis PP. Nucleotide sequence of the ribosomal protein gene cluster adjacent to the gene for RNA polymerase subunit β in Escherichia coli Proceedings of the National Academy of Sciences of the United States of America. 76: 1697-1701. PMID 377281 DOI: 10.1073/Pnas.76.4.1697  0.518
1979 Little R, Dennis PP. Expression of RNA polymerase and ribosome component genes in Escherichia coli mutants having conditionally defective RNA polymerases. Journal of Bacteriology. 137: 115-23. PMID 368011 DOI: 10.1128/jb.137.1.115-123.1979  0.458
1978 Blumenthal RM, Dennis P. Gene expression in Escherichia coli B/r during partial rifampicin-mediated restrictions of transcription initiation. Molecular Genetics and Genomics. 165: 79-86. PMID 362168 DOI: 10.1007/Bf00270379  0.542
1978 Dennis PP. Regulation of synthesis and activity of a mutant RNA polymerase in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 74: 5416-20. PMID 341156 DOI: 10.1073/Pnas.74.12.5416  0.501
1978 Dennis PP. Transcription patterns of adjacent segments on the chromosome of Escherichia coli containing genes coding for four 50S ribosomal proteins and the beta and beta' subunits of RNA polymerase. Journal of Molecular Biology. 115: 603-25. PMID 338915 DOI: 10.1016/0022-2836(77)90105-X  0.559
1978 Maher DL, Dennis PP. In vivo transcription of E. coli genes coding for rRNA, ribosomal proteins and subunits of RNA polymerase: influence of the stringent control system. Molecular & General Genetics : Mgg. 155: 203-11. PMID 337129 DOI: 10.1007/Bf00393161  0.542
1977 Blumenthal RM, Lemaux PG, Neidhardt FC, Dennis PP. The effects of the relA gene on the synthesis of aminoacyl-tRNA synthetases and other transcription and translation proteins in Escherichia coli A. Molecular & General Genetics : Mgg. 149: 291-6. PMID 799247 DOI: 10.1007/Bf00268530  0.459
1977 Dennis PP. Effects of chloramphenicol on the transcriptional activities of ribosomal RNA and ribosomal protein genes in Escherichia coli. Journal of Molecular Biology. 108: 535-46. PMID 798033 DOI: 10.1016/S0022-2836(76)80135-0  0.507
1977 Dennis PP. Influence of the stringent control system on the transcription of ribosomal ribonucleic acid and ribosomal protein genes in Escherichia coli. Journal of Bacteriology. 129: 580-8. PMID 320185 DOI: 10.1128/jb.129.2.580-588.1977  0.499
1976 Bremer H, Dennis PP. Gene activities for ribosomal components in Escherichia coli B/r. The Biochemical Journal. 150: 469-75. PMID 1108875 DOI: 10.1042/Bj1500469  0.364
1976 Bremer H, Dennis PP. Transition period following a nutritional shift-up in the bacterium Escherichia coli B/r: stable RNA and protein synthesis. Journal of Theoretical Biology. 52: 365-82. PMID 1105007 DOI: 10.1016/0022-5193(75)90007-7  0.392
1976 Dennis PP, Nordan DH. Characterization of the hybridization between purified 16S and 23S ribosomal ribonucleic acid and ribosomal deoxyribonucleic acid from Escherichia coli. Journal of Bacteriology. 128: 28-34. PMID 789334 DOI: 10.1128/jb.128.1.28-34.1976  0.371
1975 Dennis PP, Nomura M. Stringent control of ribosomal protein gene expression in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 71: 3819-23. PMID 4610562 DOI: 10.1073/Pnas.71.10.3819  0.4
1975 Lindahl L, Jaskunas SR, Dennis PP, Nomura M. Cluster of genes in Escherichia coli for ribosomal proteins, ribosomal RNA, and RNA polymerase subunits. Proceedings of the National Academy of Sciences of the United States of America. 72: 2743-7. PMID 1101264 DOI: 10.1073/pnas.72.7.2743  0.483
1974 Bremer H, Hymes J, Dennis PP. Ribosomal RNA chain growth rate and RNA labeling patterns in Escherichia coli B-r. Journal of Theoretical Biology. 45: 379-403. PMID 4602396 DOI: 10.1016/0022-5193(74)90120-9  0.486
1974 Dennis PP, Bremer H. Macromolecular composition during steady-state growth of Escherichia coli B-r. Journal of Bacteriology. 119: 270-81. PMID 4600702 DOI: 10.1128/Jb.119.1.270-281.1974  0.489
1974 Dennis PP, Bremer H. A method for determination of the synthesis rate of stable and unstable ribonucleic acid in Escherichia coli. Analytical Biochemistry. 56: 489-501. PMID 4203109 DOI: 10.1016/0003-2697(73)90216-9  0.35
1974 Dennis PP, Bremer H. Regulation of ribonucleic acid synthesis in Escherichia coli B/r: An analysis of a shift-up Journal of Molecular Biology. 89: 233-239. DOI: 10.1016/0022-2836(74)90173-9  0.504
1973 Dennis PP, Bremer H. Regulation of ribonucleic acid synthesis in Escherichia coli B-r: an analysis of a shift-up. 1. Ribosomal RNA chain growth rates. Journal of Molecular Biology. 75: 145-59. PMID 4576589 DOI: 10.1016/0022-2836(73)90535-4  0.437
1973 Bremer H, Berry L, Dennis PP. Regulation of ribonucleic acid synthesis in Escherichia coli B-r: an analysis of a shift-up. II. Fraction of RNA polymerase engaged in the synthesis of stable RNA at different steady-state growth rates. Journal of Molecular Biology. 75: 161-79. PMID 4197337 DOI: 10.1016/0022-2836(73)90536-6  0.461
1971 Dennis PP. Regulation of stable RNA synthesis in Escherichia coli. Nature: New Biology. 232: 43-7. PMID 4935732 DOI: 10.1038/newbio232043a0  0.46
1970 Dennis PP, Herman RK. Control of deoxyribonucleic acid and ribonucleic acid synthesis in pyrimidine-limited Escherichia coli. Journal of Bacteriology. 102: 124-9. PMID 4314474 DOI: 10.1128/Jb.102.1.124-129.1970  0.455
Show low-probability matches.