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George L Barnes - Publications

Affiliations: 
2012-2022 Siena College 
 2022- Chemistry Illinois State University, Normal, IL, United States 
Area:
Molecular Dynamics Simulations
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31/61 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Martin Somer A, Macaluso V, Barnes GL, Yang L, Pratihar S, Song K, Hase WL, Spezia R. Role of Chemical Dynamics Simulations in Mass Spectrometry Studies of Collision-Induced Dissociation and Collisions of Biological Ions with Organic Surfaces. Journal of the American Society For Mass Spectrometry. 31: 2-24. PMID 32881516 DOI: 10.1021/Jasms.9B00062  0.564
2020 Lucas K, Barnes GL. Modeling the Effects of O-sulfonation on the CID of Serine. Journal of the American Society For Mass Spectrometry. PMID 32202776 DOI: 10.1021/Jasms.0C00037  0.42
2020 Barnes GL, Shlaferman A, Strain M. Fast fragmentation during surface-induced dissociation: An examination of peptide size and structure Chemical Physics Letters. 754: 137716. DOI: 10.1016/J.Cplett.2020.137716  0.391
2019 Martin Somer A, Macaluso V, Barnes GL, Yang L, Pratihar S, Song K, Hase WL, Spezia R. Role of Chemical Dynamics Simulations in Mass Spectrometry Studies of Collision-Induced Dissociation and Collisions of Biological Ions with Organic Surfaces Journal of the American Society For Mass Spectrometry. 31: 2-24. DOI: 10.1021/jasms.9b00062  0.47
2018 Frederickson D, McDonough M, Barnes GL. A Computational Comparison of Soft Landing of Alpha-Helical vs Globular Peptides. The Journal of Physical Chemistry. B. PMID 30134109 DOI: 10.1021/Acs.Jpcb.8B06232  0.368
2017 Pratihar S, Ma X, Homayoon Z, Barnes GL, Hase WL. Direct Chemical Dynamics Simulations. Journal of the American Chemical Society. PMID 28118543 DOI: 10.1021/Jacs.6B12017  0.558
2017 Barnes GL, Podczerwinski A. Simulating the Effect of Charge State on Reactive Landing of a Cyclic Tetrapeptide on Chemically Modified Alkylthiolate Self-Assembled Monolayer Surfaces The Journal of Physical Chemistry C. 121: 14628-14635. DOI: 10.1021/Acs.Jpcc.7B03478  0.371
2016 Homayoon Z, Pratihar S, Dratz EA, Snider R, Spezia R, Barnes GL, Macaluso V, Martin Somer A, Hase WL. Model Simulations of the Thermal Dissociation of the TIK(H(+))2 Tripeptide. Mechanisms and Kinetic Parameters. The Journal of Physical Chemistry. A. PMID 27673376 DOI: 10.1021/Acs.Jpca.6B05884  0.561
2016 Pratihar S, Barnes GL, Laskin J, Hase WL. Dynamics of Protonated Peptide Ion Collisions with Organic Surfaces. Consonance of Simulation and Experiment. The Journal of Physical Chemistry Letters. PMID 27467857 DOI: 10.1021/Acs.Jpclett.6B00978  0.558
2015 Pratihar S, Barnes GL, Hase WL. Chemical dynamics simulations of energy transfer, surface-induced dissociation, soft-landing, and reactive-landing in collisions of protonated peptide ions with organic surfaces. Chemical Society Reviews. PMID 26563571 DOI: 10.1039/C5Cs00482A  0.568
2015 Kolakkandy S, Paul AK, Pratihar S, Kohale SC, Barnes GL, Wang H, Hase WL. Energy and temperature dependent dissociation of the Na(+)(benzene)1,2 clusters: importance of anharmonicity. The Journal of Chemical Physics. 142: 044306. PMID 25637986 DOI: 10.1063/1.4906232  0.656
2015 Shaikh K, Blackwood J, Barnes GL. The effect of protonation site and conformation on surface-induced dissociation in a small, lysine containing peptide Chemical Physics Letters. 637: 83-87. DOI: 10.1016/J.Cplett.2015.07.062  0.382
2014 Gregg Z, Ijaz W, Jannetti S, Barnes GL. The role of proton transfer in surface-induced dissociation Journal of Physical Chemistry C. 118: 22149-22155. DOI: 10.1021/Jp507069X  0.384
2014 Lourderaj U, Sun R, Kohale SC, Barnes GL, De Jong WA, Windus TL, Hase WL. The VENUS/NWChem software package. Tight coupling between chemical dynamics simulations and electronic structure theory Computer Physics Communications. 185: 1074-1080. DOI: 10.1016/J.Cpc.2013.11.011  0.694
2013 Barnes GL, Kellman ME. Time dependent quantum thermodynamics of a coupled quantum oscillator system in a small thermal environment. The Journal of Chemical Physics. 139: 214108. PMID 24320365 DOI: 10.1063/1.4833566  0.564
2013 Ijaz W, Gregg Z, Barnes GL. Complex formation during SID and its effect on proton mobility Journal of Physical Chemistry Letters. 4: 3935-3939. DOI: 10.1021/Jz402093Q  0.376
2013 Geragotelis A, Barnes GL. Surface deposition resulting from collisions between diglycine and chemically modified alkylthiolate self-assembled monolayer surfaces Journal of Physical Chemistry C. 117: 13087-13093. DOI: 10.1021/Jp402424Z  0.428
2012 Barnes GL, Kellman ME. Visualizing the zero order basis of the spectroscopic Hamiltonian. The Journal of Chemical Physics. 136: 024114. PMID 22260571 DOI: 10.1063/1.3674994  0.581
2011 Barnes GL, Kellman ME. Effective Hamiltonian for femtosecond vibrational dynamics. The Journal of Chemical Physics. 135: 144113. PMID 22010704 DOI: 10.1063/1.3650481  0.608
2011 Barnes GL, Young K, Yang L, Hase WL. Fragmentation and reactivity in collisions of protonated diglycine with chemically modified perfluorinated alkylthiolate-self-assembled monolayer surfaces. The Journal of Chemical Physics. 134: 094106. PMID 21384949 DOI: 10.1063/1.3558736  0.57
2011 Barnes GL, Kellman ME. Detailed analysis of polyad-breaking spectroscopic Hamiltonians for multiple minima with above barrier motion: isomerization in HO2. The Journal of Chemical Physics. 134: 074108. PMID 21341829 DOI: 10.1063/1.3552086  0.627
2010 Barnes GL, Kellman ME. Communication: Effective spectroscopic Hamiltonian for multiple minima with above barrier motion: Isomerization in HO(2). The Journal of Chemical Physics. 133: 101105. PMID 20849156 DOI: 10.1063/1.3480017  0.628
2010 Zhang Y, Barnes GL, Yan T, Hase WL. Model non-equilibrium molecular dynamics simulations of heat transfer from a hot gold surface to an alkylthiolate self-assembled monolayer. Physical Chemistry Chemical Physics : Pccp. 12: 4435-45. PMID 20407717 DOI: 10.1039/B923858C  0.6
2009 Barnes GL, Hase WL. Transition state analysis: Bent out of shape. Nature Chemistry. 1: 103-4. PMID 21378815 DOI: 10.1038/Nchem.193  0.547
2009 Barnes GL, Hase WL. Energy transfer, unfolding, and fragmentation dynamics in collisions of N-protonated octaglycine with an H-SAM surface. Journal of the American Chemical Society. 131: 17185-93. PMID 19929018 DOI: 10.1021/Ja904925P  0.566
2009 Barnes GL, Hase WL. NH4(+) + CH4 gas phase collisions as a possible analogue to protonated peptide/surface induced dissociation. The Journal of Physical Chemistry. A. 113: 7543-7. PMID 19358592 DOI: 10.1021/Jp900919S  0.548
2008 Barnes GL, Sibert EL. The effects of asymmetric motions on the tunneling splittings in formic acid dimer. The Journal of Chemical Physics. 129: 164317. PMID 19045276 DOI: 10.1063/1.3000102  0.604
2008 Barnes GL, Squires SM, Sibert EL. Symmetric double proton tunneling in formic acid dimer: a diabatic basis approach. The Journal of Physical Chemistry. B. 112: 595-603. PMID 18004835 DOI: 10.1021/Jp075376E  0.632
2008 Barnes GL, Sibert EL. An equilibrium focused approach to calculating the Raman spectrum of the symmetric OH stretch in formic acid dimer Journal of Molecular Spectroscopy. 249: 78-85. DOI: 10.1016/J.Jms.2008.02.008  0.594
2008 Barnes GL, Sibert EL. Elucidating energy disposal pathways following excitation of the symmetric OH stretching band in formic acid dimer Chemical Physics Letters. 460: 42-45. DOI: 10.1016/J.Cplett.2008.05.090  0.615
2004 Wade EA, Lorenz KT, Chandler DW, Barr JW, Barnes GL, Cline JI. Ion imaging studies of product rotational alignment in collisions of NO (X2Π1/2, j = 0.5) with Ar Chemical Physics. 301: 261-272. DOI: 10.1016/J.Chemphys.2004.02.014  0.311
Low-probability matches (unlikely to be authored by this person)
2001 Lorenz KT, Chandler DW, Barr JW, Chen W, Barnes GL, Cline JI. Direct measurement of the preferred sense of NO rotation after collision with argon. Science (New York, N.Y.). 293: 2063-6. PMID 11557886 DOI: 10.1126/Science.1062754  0.298
1968 Bettler PC, Barnes G. Field-emission studies of surface migration for tungsten, rhenium, iridium, and rhodium Surface Science. 10: 165-176. DOI: 10.1016/0039-6028(68)90017-4  0.296
2004 Elles CG, Cox MJ, Barnes GL, Crim FF. Recombination and reaction dynamics following photodissociation of CH 3OCl in solution Journal of Physical Chemistry A. 108: 10973-10979. DOI: 10.1021/Jp046627B  0.294
2021 Lucas K, Chen A, Schubmehl M, Kolonko KJ, Barnes GL. Exploring the Effects of Methylation on the CID of Protonated Lysine: A Combined Experimental and Computational Approach. Journal of the American Society For Mass Spectrometry. 32: 2675-2684. PMID 34677967 DOI: 10.1021/jasms.1c00225  0.254
2010 Addepallil SV, Andersen P, Barnes GL. Efficient Resource Matching in Heterogeneous Grid Using Resource Vector International Journal of Computer Science and Information Technology. 2: 1-10. DOI: 10.5121/Ijcsit.2010.2301  0.197
1967 Barnes G. Some physics related to automobile accidents Science Education. 51: 358-368. DOI: 10.1002/Sce.3730510410  0.192
2021 Martínez-Núñez E, Barnes GL, Glowacki DR, Kopec S, Peláez D, Rodríguez A, Rodríguez-Fernández R, Shannon RJ, Stewart JJP, Tahoces PG, Vazquez SA. AutoMeKin2021: An open-source program for automated reaction discovery. Journal of Computational Chemistry. PMID 34387374 DOI: 10.1002/jcc.26734  0.177
2020 Lischka H, Tully J, Wang H, Barnes GL. Memorial Viewpoint for William L. Hase. The Journal of Physical Chemistry. A. 124: 4183-4184. PMID 32460503 DOI: 10.1021/Acs.Jpca.0C03827  0.177
1969 Bettler PC, Barnes G, Mozingo HN, Scheid VE, Young RA. Reno: Appraisal of DRI. Science. 166: 1224-1224. PMID 17759938 DOI: 10.1126/Science.166.3910.1224  0.171
2007 Popat KC, Chatvanichkul KI, Barnes GL, Latempa TJ, Grimes CA, Desai TA. Osteogenic differentiation of marrow stromal cells cultured on nanoporous alumina surfaces. Journal of Biomedical Materials Research. Part A. 80: 955-64. PMID 17089417 DOI: 10.1002/Jbm.A.31028  0.116
1960 Barnes G. Erroneous readings of large magnitude in a Bayard-Alpert ionization gauge and their probable cause Review of Scientific Instruments. 31: 1121-1127. DOI: 10.1063/1.1716823  0.111
1960 Barnes G. New type of cold cathode vacuum gauge for the measurement of pressures below 10-3mmHg Review of Scientific Instruments. 31: 608-611. DOI: 10.1063/1.1931265  0.074
2009 Morgan EF, Mason ZD, Chien KB, Pfeiffer AJ, Barnes GL, Einhorn TA, Gerstenfeld LC. Micro-computed tomography assessment of fracture healing: relationships among callus structure, composition, and mechanical function. Bone. 44: 335-44. PMID 19013264 DOI: 10.1016/J.Bone.2008.10.039  0.058
2016 Han Y, Barnes G, Lin Y, Martin J, Al-Hashimi M, AlQaradawi SY, Anthopoulos TD, Heeney M. Doping of Large Ionization Potential Indenopyrazine Polymers via Lewis Acid Complexation with Tris(pentafluorophenyl)borane: A Simple Method for Improving the Performance of Organic Thin-Film Transistors Chemistry of Materials. 28: 8016-8024. DOI: 10.1021/ACS.CHEMMATER.6B03761  0.058
2004 Harwerth RS, Carter-Dawson L, Smith EL, Barnes G, Holt WF, Crawford ML. Neural losses correlated with visual losses in clinical perimetry. Investigative Ophthalmology & Visual Science. 45: 3152-60. PMID 15326134 DOI: 10.1167/iovs.04-0227  0.054
2002 Hellberg MR, McLaughlin MA, Sharif NA, DeSantis L, Dean TR, Kyba EP, Bishop JE, Klimko PG, Zinke PW, Selliah RD, Barnes G, DeFaller J, Kothe A, Landry T, Sullivan EK, et al. Identification and characterization of the ocular hypotensive efficacy of travoprost, a potent and selective FP prostaglandin receptor agonist, and AL-6598, a DP prostaglandin receptor agonist. Survey of Ophthalmology. 47: S13-33. PMID 12204698 DOI: 10.1016/S0039-6257(02)00293-X  0.054
2007 Kakar S, Einhorn TA, Vora S, Miara LJ, Hon G, Wigner NA, Toben D, Jacobsen KA, Al-Sebaei MO, Song M, Trackman PC, Morgan EF, Gerstenfeld LC, Barnes GL. Enhanced chondrogenesis and Wnt signaling in PTH-treated fractures. Journal of Bone and Mineral Research : the Official Journal of the American Society For Bone and Mineral Research. 22: 1903-12. PMID 17680724 DOI: 10.1359/Jbmr.070724  0.044
1959 Barnes GL. Herbicidal agents as possible aids for roguing diseased seed-potato plants American Potato Journal. 36: 212-218. DOI: 10.1007/BF02852468  0.037
2009 Joachim SC, Grus FH, Kraft D, White-Farrar K, Barnes G, Barbeck M, Ghanaati S, Cao S, Li B, Wax MB. Complex antibody profile changes in an experimental autoimmune glaucoma animal model. Investigative Ophthalmology & Visual Science. 50: 4734-42. PMID 19458332 DOI: 10.1167/iovs.08-3144  0.035
1966 Barnes GL, Mueller II. The dependence of the level-sensitivity on the position and length of the bubble on the wild T-4 theodolite Bulletin GéOdéSique. 40: 277-286. DOI: 10.1007/BF02527015  0.032
2007 Edgar CM, Chakravarthy V, Barnes G, Kakar S, Gerstenfeld LC, Einhorn TA. Autogenous regulation of a network of bone morphogenetic proteins (BMPs) mediates the osteogenic differentiation in murine marrow stromal cells. Bone. 40: 1389-98. PMID 17303481 DOI: 10.1016/J.Bone.2007.01.001  0.032
2004 Barnes GL, Hebert KE, Kamal M, Javed A, Einhorn TA, Lian JB, Stein GS, Gerstenfeld LC. Fidelity of Runx2 activity in breast cancer cells is required for the generation of metastases-associated osteolytic disease. Cancer Research. 64: 4506-13. PMID 15231660 DOI: 10.1158/0008-5472.Can-03-3851  0.031
2003 Gerstenfeld LC, Cullinane DM, Barnes GL, Graves DT, Einhorn TA. Fracture healing as a post-natal developmental process: molecular, spatial, and temporal aspects of its regulation. Journal of Cellular Biochemistry. 88: 873-84. PMID 12616527 DOI: 10.1002/Jcb.10435  0.031
2008 Barnes GL, Kakar S, Vora S, Morgan EF, Gerstenfeld LC, Einhorn TA. Stimulation of fracture-healing with systemic intermittent parathyroid hormone treatment. The Journal of Bone and Joint Surgery. American Volume. 90: 120-7. PMID 18292366 DOI: 10.2106/Jbjs.G.01443  0.031
2003 Li B, Pang IH, Barnes G, McLaughlin M, Holt W. A new method and device to induce transient retinal ischemia in the rat. Current Eye Research. 24: 458-64. PMID 12525973 DOI: 10.1076/ceyr.24.6.458.8596  0.029
2002 Barnes GL, Della Torre T, Sommer B, Young MF, Gerstenfeld LC. Transcriptional regulation restricting bone sialoprotein gene expression to both hypertrophic chondrocytes and osteoblasts. Journal of Cellular Biochemistry. 87: 458-69. PMID 12397605 DOI: 10.1002/Jcb.10351  0.027
2024 Greene MK, Smyth P, English A, McLaughlin J, Bucholc M, Bailie J, McCarroll J, McDonnell M, Watt A, Barnes G, Lynch M, Duffin K, Duffy G, Lewis C, James JA, et al. Analysis of SARS-CoV-2 antibody seroprevalence in Northern Ireland during 2020-2021. Heliyon. 10: e24184. PMID 38304848 DOI: 10.1016/j.heliyon.2024.e24184  0.025
2003 Barnes GL, Javed A, Waller SM, Kamal MH, Hebert KE, Hassan MQ, Bellahcene A, Van Wijnen AJ, Young MF, Lian JB, Stein GS, Gerstenfeld LC. Osteoblast-related transcription factors Runx2 (Cbfa1/AML3) and MSX2 mediate the expression of bone sialoprotein in human metastatic breast cancer cells. Cancer Research. 63: 2631-7. PMID 12750290  0.025
2002 Gerstenfeld LC, Cruceta J, Shea CM, Sampath K, Barnes GL, Einhorn TA. Chondrocytes provide morphogenic signals that selectively induce osteogenic differentiation of mesenchymal stem cells. Journal of Bone and Mineral Research : the Official Journal of the American Society For Bone and Mineral Research. 17: 221-30. PMID 11811552 DOI: 10.1359/Jbmr.2002.17.2.221  0.023
2005 Javed A, Barnes GL, Pratap J, Antkowiak T, Gerstenfeld LC, van Wijnen AJ, Stein JL, Lian JB, Stein GS. Impaired intranuclear trafficking of Runx2 (AML3/CBFA1) transcription factors in breast cancer cells inhibits osteolysis in vivo. Proceedings of the National Academy of Sciences of the United States of America. 102: 1454-9. PMID 15665096 DOI: 10.1073/Pnas.0409121102  0.02
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