Shubhasis Haldar - Related publications

Affiliations: 
2016- Department of Biological Sc Columbia University, New York, NY 
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Elfageih R, Karyolaimos A, Kemp G, de Gier JW, von Heijne G, Kudva R. Cotranslational folding of alkaline phosphatase in the periplasm of Escherichia coli. Protein Science : a Publication of the Protein Society. PMID 32790204 DOI: 10.1002/pro.3927   
2020 Sharma S, Subramani S, Popa I. Does protein unfolding play a functional role in vivo? The Febs Journal. PMID 32761965 DOI: 10.1111/febs.15508   
2020 Avestan MS, Javidi A, Ganote LP, Brown JM, Stan G. Kinetic effects in directional proteasomal degradation of the green fluorescent protein. The Journal of Chemical Physics. 153: 105101. PMID 32933274 DOI: 10.1063/5.0015191   
2020 Zhao V, Jacobs WM, Shakhnovich EI. Effect of Protein Structure on Evolution of Cotranslational Folding. Biophysical Journal. PMID 32857962 DOI: 10.1016/j.bpj.2020.06.037   
2020 Nash MA. Single-molecule and Single-cell Approaches in Molecular Bioengineering. Chimia. 74: 704-709. PMID 32958108 DOI: 10.2533/chimia.2020.704   
2020 Paul S, Paul S. In silico study of osmolytic effects of choline-O-sulfate on urea induced unfolding of Trp-cage mini-protein: An atomistic view from replica exchange molecular dynamics simulation. Archives of Biochemistry and Biophysics. 108484. PMID 32883513 DOI: 10.1016/j.abb.2020.108484   
2020 Elayan H, Eckford AW, Adve R. Information Rates of Controlled Protein Interactions Using Terahertz Communication. Ieee Transactions On Nanobioscience. PMID 32886612 DOI: 10.1109/TNB.2020.3021825   
2020 Ding Y, Ball KA, Webb KJ, Gao Y, D'Alessandro A, Old WM, Stowell MHB, Ding X. On-Chip Acousto Thermal Shift Assay for Rapid and Sensitive Assessment of Protein Thermodynamic Stability. Small (Weinheim An Der Bergstrasse, Germany). e2003506. PMID 32893496 DOI: 10.1002/smll.202003506   
2020 Morgan IL, Avinery R, Rahamim G, Beck R, Saleh OA. Glassy Dynamics and Memory Effects in an Intrinsically Disordered Protein Construct. Physical Review Letters. 125: 058001. PMID 32794838 DOI: 10.1103/PhysRevLett.125.058001   
2020 Bowman MA, Riback JA, Rodriguez A, Guo H, Li J, Sosnick TR, Clark PL. Properties of protein unfolded states suggest broad selection for expanded conformational ensembles. Proceedings of the National Academy of Sciences of the United States of America. PMID 32879005 DOI: 10.1073/pnas.2003773117   
2020 Stollar EJ, Smith DP. Uncovering protein structure. Essays in Biochemistry. PMID 32975287 DOI: 10.1042/EBC20190042   
2020 Singh A, Thakur M, Singh SK, Sharma LK, Chandra K. Exploring the effect of nsSNPs in human YPEL3 gene in cellular senescence. Scientific Reports. 10: 15301. PMID 32943700 DOI: 10.1038/s41598-020-72333-8   
2020 Gagaoua M, Bonnet M, Picard B. Protein Array-Based Approach to Evaluate Biomarkers of Beef Tenderness and Marbling in Cows: Understanding of the Underlying Mechanisms and Prediction. Foods (Basel, Switzerland). 9. PMID 32858893 DOI: 10.3390/foods9091180   
2020 Ma Y, Lee CJ, Park JS. Strategies for Optimizing the Production of Proteins and Peptides with Multiple Disulfide Bonds. Antibiotics (Basel, Switzerland). 9. PMID 32858882 DOI: 10.3390/antibiotics9090541   
2020 Knight M, Woolley R, Kwok A, Parsons S, Jones H, Gulacsy C, Phaal P, Kassaar O, Dawkins K, Rodriguez E, Marques A, Bowsher L, Wells SA, Watts A, van den Elsen JM, et al. Monoclonal antibody stability can be usefully monitored using the excitation-energy-dependent fluorescence edge-shift. The Biochemical Journal. PMID 32869839 DOI: 10.1042/BCJ20200580   
2020 Kim TK, Lee MH, Yong HI, Jung S, Paik HD, Jang HW, Choi YS. Effect of Interaction between Mealworm Protein and Myofibrillar Protein on the Rheological Properties and Thermal Stability of the Prepared Emulsion Systems. Foods (Basel, Switzerland). 9. PMID 33053732 DOI: 10.3390/foods9101443   
2020 Sadat A, Tiwari S, Verma K, Ray A, Ali M, Upadhyay V, Singh A, Chaphalkar A, Ghosh A, Chakraborty R, Chakraborty K, Mapa K. GROEL/ES Buffers Entropic Traps in Folding Pathway during Evolution of a Model Substrate. Journal of Molecular Biology. PMID 32835659 DOI: 10.1016/j.jmb.2020.08.015   
2020 Ruan L, McNamara JT, Zhang X, Chang AC, Zhu J, Dong Y, Sun G, Peterson A, Na CH, Li R. Solid-phase inclusion as a mechanism for regulating unfolded proteins in the mitochondrial matrix. Science Advances. 6: eabc7288. PMID 32821848 DOI: 10.1126/sciadv.abc7288   
2020 Lv M, Cui C, Chen P, Li Z. Identification of osteoporosis markers through bioinformatic functional analysis of serum proteome. Medicine. 99: e22172. PMID 32991410 DOI: 10.1097/MD.0000000000022172   
2020 Lv M, Cui C, Chen P, Li Z. Identification of osteoporosis markers through bioinformatic functional analysis of serum proteome. Medicine. 99: e22172. PMID 32991410 DOI: 10.1097/MD.0000000000022172   
2020 Miyamae Y, Chen LC, Utsugi Y, Farrants H, Wandless TJ. A Method for Conditional Regulation of Protein Stability in Native or Near-Native Form. Cell Chemical Biology. PMID 33007216 DOI: 10.1016/j.chembiol.2020.09.004   
2020 Cong J, Cui J, Zhang H, Dzah CS, He Y, Duan Y. Binding affinity, antioxidative capacity and in vitro digestion of complexes of grape seed procyanidins and pork, chicken and fish protein. Food Research International (Ottawa, Ont.). 136: 109530. PMID 32846594 DOI: 10.1016/j.foodres.2020.109530   
2020 Kihara S, Ghosh S, McDougall DR, Whitten AE, Mata JP, Köper I, McGillivray DJ. Structure of soft and hard protein corona around polystyrene nanoplastics-Particle size and protein types. Biointerphases. 15: 051002. PMID 32948094 DOI: 10.1116/6.0000404   
2020 Lazim R, Suh D, Choi S. Advances in Molecular Dynamics Simulations and Enhanced Sampling Methods for the Study of Protein Systems. International Journal of Molecular Sciences. 21. PMID 32882859 DOI: 10.3390/ijms21176339   
2020 Gorka M, Cherepanov DA, Semenov AY, Golbeck JH. Control of electron transfer by protein dynamics in photosynthetic reaction centers. Critical Reviews in Biochemistry and Molecular Biology. 1-44. PMID 32883115 DOI: 10.1080/10409238.2020.1810623   
2020 McClatchy DB, Martínez-Bartolomé S, Gao Y, Lavallée-Adam M, Yates JR. Quantitative analysis of global protein stability rates in tissues. Scientific Reports. 10: 15983. PMID 32994440 DOI: 10.1038/s41598-020-72410-y   
2020 Chen N, Das M, LiWang A, Wang LP. Sequence-Based Prediction of Metamorphic Behavior in Proteins. Biophysical Journal. PMID 32937108 DOI: 10.1016/j.bpj.2020.07.034   
2020 Mebratu YA, Negasi ZH, Dutta S, Rojas-Quintero J, Tesfaigzi Y. Adaptation of Proteasomes and Lysosomes to Cellular Environments. Cells. 9. PMID 33019542 DOI: 10.3390/cells9102221   
2020 Tian H, Trozzi F, Zoltowski BD, Tao P. Deciphering the Allosteric Process of Aureochrome 1a LOV Domain. The Journal of Physical Chemistry. B. PMID 32970438 DOI: 10.1021/acs.jpcb.0c05842   
2020 Zheng Q, Wang M, Zhang L, Ahmad W, Li H, Tong Y, Zheng G, Zhu S. Topology engineering via protein catenane construction to strengthen an industrial biocatalyst. Journal of Biotechnology. PMID 33065139 DOI: 10.1016/j.jbiotec.2020.10.012   
2020 Kocyła A, Tran JB, Krężel A. Galvanization of Protein-Protein Interactions in a Dynamic Zinc Interactome. Trends in Biochemical Sciences. PMID 32958327 DOI: 10.1016/j.tibs.2020.08.011   
2020 Elfiky AA, Baghdady AM, Ali SA, Ahmed MI. GRP78 targeting: Hitting two birds with a stone. Life Sciences. 118317. PMID 32841659 DOI: 10.1016/j.lfs.2020.118317   
2020 Kosanovic D, Grogan H, Kavanagh K. Exposure of Agaricus bisporus to Trichoderma aggressivum f. europaeum leads to growth inhibition and induction of an oxidative stress response. Fungal Biology. 124: 814-820. PMID 32883431 DOI: 10.1016/j.funbio.2020.07.003   
2020 Kosanovic D, Grogan H, Kavanagh K. Exposure of Agaricus bisporus to Trichoderma aggressivum f. europaeum leads to growth inhibition and induction of an oxidative stress response. Fungal Biology. 124: 814-820. PMID 32883431 DOI: 10.1016/j.funbio.2020.07.003   
2020 Zou X, He J, Zhao D, Zhang M, Xie Y, Dai C, Wang C, Li C. Structural Changes and Evolution of Peptides During Chill Storage of Pork. Frontiers in Nutrition. 7: 151. PMID 33072793 DOI: 10.3389/fnut.2020.00151   
2020 Daskalakis V, Papadatos S, Stergiannakos T. The conformational phase space of the photoprotective switch in the major light harvesting complex II. Chemical Communications (Cambridge, England). PMID 32815976 DOI: 10.1039/d0cc04486e   
2020 Singh A, Vashistha N, Heck J, Tang X, Wipf P, Brodsky JL, Hampton RY. Direct involvement of Hsp70 ATP hydrolysis in Ubr1-dependent quality control. Molecular Biology of the Cell. mbcE20080541. PMID 32966159 DOI: 10.1091/mbc.E20-08-0541   
2020 Misra SK, Sharp JS. Enabling Real-Time Compensation in Fast Photochemical Oxidations of Proteins for the Determination of Protein Topography Changes. Journal of Visualized Experiments : Jove. PMID 32955502 DOI: 10.3791/61580   
2020 Xiao F, Hu Z, Tan X, Huang ZZ. [Expression, purification and polyclonal antibody preparation of the SjGrpE protein]. Zhongguo Xue Xi Chong Bing Fang Zhi Za Zhi = Chinese Journal of Schistosomiasis Control. 32: 355-360. PMID 32935508 DOI: 10.16250/j.32.1374.2020090   
2020 Tse C, Wickstrom L, Kvaratskhelia M, Gallicchio E, Levy R, Deng N. Exploring the Free-Energy Landscape and Thermodynamics of Protein-Protein Association. Biophysical Journal. PMID 32877664 DOI: 10.1016/j.bpj.2020.08.005   
2020 Mirela-Bota P, Aguirre-Plans J, Meseguer A, Galletti C, Segura J, Planas-Iglesias J, Garcia-Garcia J, Guney E, Oliva B, Fernandez-Fuentes N. Galaxy InteractoMIX: An Integrated Computational Platform for the Study of Protein-Protein Interaction Data. Journal of Molecular Biology. PMID 32976910 DOI: 10.1016/j.jmb.2020.09.015   
2020 Tan KT, Chan HJ, Lin XH, Fan SY, Hwu JR. Rapid and Selective Labeling of Endogenous Transmembrane Proteins in Living Cells with Difluorophenyl Ester Affinity-Based Probe. Chemistry, An Asian Journal. PMID 32931625 DOI: 10.1002/asia.202001049   
2020 Ferdous N, Reza MN, Emon MTH, Islam MS, Mohiuddin AKM, Hossain MU. Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of Streptomyces coelicolor A3(2). Genomics & Informatics. 18: e28. PMID 33017872 DOI: 10.5808/GI.2020.18.3.e28   
2020 Ferdous N, Reza MN, Emon MTH, Islam MS, Mohiuddin AKM, Hossain MU. Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of Streptomyces coelicolor A3(2). Genomics & Informatics. 18: e28. PMID 33017872 DOI: 10.5808/GI.2020.18.3.e28   
2020 Määttä TA, Rettel M, Sridharan S, Helm D, Kurzawa N, Stein F, Savitski MM. Aggregation and disaggregation features of the human proteome. Molecular Systems Biology. 16: e9500. PMID 33022891 DOI: 10.15252/msb.20209500   
2020 Begeman A, Son A, Litberg TJ, Wroblewski TH, Gehring T, Huizar Cabral V, Bourne J, Xuan Z, Horowitz S. G-Quadruplexes act as sequence-dependent protein chaperones. Embo Reports. e49735. PMID 32945124 DOI: 10.15252/embr.201949735   
2020 Rodrigues CHM, Pires DEV, Ascher DB. DynaMut2: Assessing changes in stability and flexibility upon single and multiple point missense mutations. Protein Science : a Publication of the Protein Society. PMID 32881105 DOI: 10.1002/pro.3942   
2020 Stadmiller SS, Aguilar JS, Parnham S, Pielak GJ. Protein-Peptide Binding Energetics under Crowded Conditions. The Journal of Physical Chemistry. B. PMID 32936642 DOI: 10.1021/acs.jpcb.0c05578   
2020 Di Costanzo L, Geremia S. Atomic Details of Carbon-Based Nanomolecules Interacting with Proteins. Molecules (Basel, Switzerland). 25. PMID 32759758 DOI: 10.3390/molecules25153555   
2020 Vidal-Lletjós S, Khodorova NV, Piscuc M, Gaudichon C, Blachier F, Lan A. Tissue-specific effect of colitis on protein synthesis in mice: impact of the dietary protein content. European Journal of Nutrition. PMID 32808061 DOI: 10.1007/s00394-020-02365-3