Yiming Ye, Ph.D. - Publications

Affiliations: 
2001 Georgia State University, Atlanta, GA, United States 
Area:
Molecular Biology

23/68 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2011 Wei L, Li S, Yang J, Ye Y, Zou J, Wang L, Long R, Zurkiya O, Zhao T, Johnson J, Qiao J, Zhou W, Castiblanco A, Maor N, Chen Y, et al. Protein-based MRI contrast agents for molecular imaging of prostate cancer. Molecular Imaging and Biology : Mib : the Official Publication of the Academy of Molecular Imaging. 13: 416-23. PMID 20574851 DOI: 10.1007/S11307-010-0342-9  0.694
2010 Zhou Y, Tzeng WP, Wong HC, Ye Y, Jiang J, Chen Y, Huang Y, Suppiah S, Frey TK, Yang JJ. Calcium-dependent association of calmodulin with the rubella virus nonstructural protease domain. The Journal of Biological Chemistry. 285: 8855-68. PMID 20086014 DOI: 10.1074/Jbc.M109.097063  0.804
2009 Chen N, Ye Y, Zou J, Li S, Wang S, Martin A, Wohlhueter R, Yang JJ. Fluorescence complementation via EF-hand interactions. Journal of Biotechnology. 142: 205-13. PMID 19500621 DOI: 10.1016/J.Jbiotec.2009.05.007  0.646
2009 Chen N, Zou J, Wang S, Ye Y, Huang Y, Gadda G, Yang JJ. Designing protease sensors for real-time imaging of trypsin activation in pancreatic cancer cells. Biochemistry. 48: 3519-26. PMID 19271729 DOI: 10.1021/Bi802289V  0.588
2009 Zhou Y, Tzeng WP, Ye Y, Huang Y, Li S, Chen Y, Frey TK, Yang JJ. A cysteine-rich metal-binding domain from rubella virus non-structural protein is essential for viral protease activity and virus replication. The Biochemical Journal. 417: 477-83. PMID 18795894 DOI: 10.1042/Bj20081468  0.793
2007 Zou J, Hofer AM, Lurtz MM, Gadda G, Ellis AL, Chen N, Huang Y, Holder A, Ye Y, Louis CF, Welshhans K, Rehder V, Yang JJ. Developing sensors for real-time measurement of high Ca2+ concentrations. Biochemistry. 46: 12275-88. PMID 17924653 DOI: 10.1021/Bi7007307  0.759
2007 Zhou Y, Yang W, Lurtz MM, Ye Y, Huang Y, Lee HW, Chen Y, Louis CF, Yang JJ. Identification of the calmodulin binding domain of connexin 43. The Journal of Biological Chemistry. 282: 35005-17. PMID 17901047 DOI: 10.1074/Jbc.M707728200  0.783
2007 Zhou Y, Tzeng WP, Yang W, Zhou Y, Ye Y, Lee HW, Frey TK, Yang J. Identification of a Ca2+-binding domain in the rubella virus nonstructural protease. Journal of Virology. 81: 7517-28. PMID 17475644 DOI: 10.1128/Jvi.00605-07  0.81
2006 Carroll A, Yang W, Ye Y, Simmons R, Yang JJ. Amyloid fibril formation by a domain of rat cell adhesion molecule. Cell Biochemistry and Biophysics. 44: 241-9. PMID 16456226 DOI: 10.1385/Cbb:44:2:241  0.57
2005 Yang W, Wilkins AL, Li S, Ye Y, Yang JJ. The effects of Ca2+ binding on the dynamic properties of a designed Ca2+-binding protein. Biochemistry. 44: 8267-73. PMID 15938616 DOI: 10.1021/Bi050463N  0.7
2005 Zou J, Ye Y, Welshhans K, Lurtz M, Ellis AL, Louis C, Rehder V, Yang JJ. Expression and optical properties of green fluorescent protein expressed in different cellular environments. Journal of Biotechnology. 119: 368-78. PMID 15935502 DOI: 10.1016/J.Jbiotec.2005.04.001  0.73
2005 Ye Y, Lee HW, Yang W, Yang JJ. Calcium and lanthanide affinity of the EF-loops from the C-terminal domain of calmodulin. Journal of Inorganic Biochemistry. 99: 1376-83. PMID 15917089 DOI: 10.1016/J.Jinorgbio.2005.03.011  0.804
2005 Ye Y, Lee HW, Yang W, Shealy S, Yang JJ. Probing site-specific calmodulin calcium and lanthanide affinity by grafting. Journal of the American Chemical Society. 127: 3743-50. PMID 15771508 DOI: 10.1021/Ja042786X  0.801
2005 Yang W, Wilkins AL, Ye Y, Liu ZR, Li SY, Urbauer JL, Hellinga HW, Kearney A, van der Merwe PA, Yang JJ. Design of a calcium-binding protein with desired structure in a cell adhesion molecule. Journal of the American Chemical Society. 127: 2085-93. PMID 15713084 DOI: 10.1021/Ja0431307  0.714
2003 Yang JJ, Gawthrop A, Ye Y. Obtaining site-specific calcium-binding affinities of calmodulin. Protein and Peptide Letters. 10: 331-45. PMID 14529487 DOI: 10.2174/0929866033478852  0.668
2003 Ye Y, Shealy S, Lee HW, Torshin I, Harrison R, Yang JJ. A grafting approach to obtain site-specific metal-binding properties of EF-hand proteins. Protein Engineering. 16: 429-34. PMID 12874376 DOI: 10.1093/Protein/Gzg051  0.789
2003 Yang W, Jones LM, Isley L, Ye Y, Lee HW, Wilkins A, Liu ZR, Hellinga HW, Malchow R, Ghazi M, Yang JJ. Rational design of a calcium-binding protein. Journal of the American Chemical Society. 125: 6165-71. PMID 12785848 DOI: 10.1021/Ja034724X  0.768
2002 Yang JJ, Ye Y, Carroll A, Yang W, Lee HW. Structural biology of the cell adhesion protein CD2: alternatively folded states and structure-function relation. Current Protein & Peptide Science. 2: 1-17. PMID 12369898 DOI: 10.2174/1389203013381251  0.732
2002 Wilkins AL, Ye Y, Yang W, Lee HW, Liu ZR, Yang JJ. Metal-binding studies for a de novo designed calcium-binding protein. Protein Engineering. 15: 571-4. PMID 12200539 DOI: 10.1093/Protein/15.7.571  0.78
2002 Lee HW, Yang W, Ye Y, Liu ZR, Glushka J, Yang JJ. Isolated EF-loop III of calmodulin in a scaffold protein remains unpaired in solution using pulsed-field-gradient NMR spectroscopy. Biochimica Et Biophysica Acta. 1598: 80-7. PMID 12147347 DOI: 10.1016/S0167-4838(02)00338-2  0.772
2002 Yang JJ, Yang H, Ye Y, Hopkins H, Hastings G. Temperature-induced formation of a non-native intermediate state of the all beta-sheet protein CD2. Cell Biochemistry and Biophysics. 36: 1-18. PMID 11939369 DOI: 10.1385/Cbb:36:1:01  0.581
2002 Ye Y, Lee HW, Yang W, Shealy SJ, Wilkins AL, Liu ZR, Torshin I, Harrison R, Wohlhueter R, Yang JJ. Metal binding affinity and structural properties of an isolated EF-loop in a scaffold protein. Protein Engineering. 14: 1001-13. PMID 11809931 DOI: 10.1093/Protein/14.12.1001  0.797
2000 Yang JJ, Carroll AR, Yang W, Ye Y, Nguyen CN. Nonnative intermediate state of acid-stable β-sheet protein Cell Biochemistry and Biophysics. 33: 253-273. PMID 11325045 DOI: 10.1385/Cbb:33:3:253  0.588
Low-probability matches (unlikely to be authored by this person)
2010 Panicker G, Ye Y, Wang D, Unger ER. Characterization of the Human Cervical Mucous Proteome. Clinical Proteomics. 6: 18-28. PMID 20461121 DOI: 10.1007/S12014-010-9042-3  0.166
2010 Ye Y, Mar EC, Tong S, Sammons S, Fang S, Anderson LJ, Wang D. Application of proteomics methods for pathogen discovery. Journal of Virological Methods. 163: 87-95. PMID 19751767 DOI: 10.1016/j.jviromet.2009.09.002  0.149
2020 Zhao Y, Zhu H, Yang Y, Ye Y, Yao Y, Huang X, Zhang Y, Shu X, Chen X, Yang Y, Ma J, Cheng L, Wang X, Ying Y. AQP1 suppression by ATF4 triggers trabecular meshwork tissue remodelling in ET-1-induced POAG. Journal of Cellular and Molecular Medicine. PMID 32052937 DOI: 10.1111/Jcmm.15032  0.132
2017 Liu Q, Ye Y, Lin X, Yang Y, Wu K, Yu M. Expression of 14-3-3 Zeta Protein in Dexamethasone-Treated Mice and Human TM-1 Cells. Current Eye Research. 1-6. PMID 28494163 DOI: 10.1080/02713683.2017.1284242  0.128
2001 Ye Y, Liu J, Moukas A. Electronic Commerce Research. 1: 9-14. DOI: 10.1023/A:1011503610731  0.12
2013 Wang D, Baudys J, Ye Y, Rees JC, Barr JR, Pirkle JL, Kalb SR. Improved detection of botulinum neurotoxin serotype A by Endopep-MS through peptide substrate modification. Analytical Biochemistry. 432: 115-23. PMID 23017875 DOI: 10.1016/j.ab.2012.09.021  0.101
2021 Ying Y, Xue R, Yang Y, Zhang SX, Xiao H, Zhu H, Li J, Chen G, Ye Y, Yu M, Liu X, Zhong Y. Activation of ATF4 triggers trabecular meshwork cell dysfunction and apoptosis in POAG. Aging. 13. PMID 33714955 DOI: 10.18632/aging.202677  0.099
2018 Manicum T, Ni F, Ye Y, Fan X, Chen BC. Prognostic values of mRNA expression in human gastric cancer. Bioscience Reports. 38. PMID 30487158 DOI: 10.1042/BSR20181264  0.085
2016 Ye Y, Yang Y, Cai X, Liu L, Wu K, Yu M. Down-regulation of 14-3-3 Zeta Inhibits TGF-β1-Induced Actomyosin Contraction in Human Trabecular Meshwork Cells Through RhoA Signaling Pathway. Investigative Ophthalmology & Visual Science. 57: 719-30. PMID 26906158 DOI: 10.1167/iovs.15-17438  0.079
1999 Ye Y, Tsotsos JK. Sensor Planning for 3D Object Search Computer Vision and Image Understanding. 73: 145-168. DOI: 10.1006/cviu.1998.0736  0.067
2015 Qiu X, Wu K, Lin X, Liu Q, Ye Y, Yu M. Dexamethasone increases Cdc42 expression in human TM-1 cells. Current Eye Research. 40: 290-9. PMID 24871483 DOI: 10.3109/02713683.2014.922191  0.062
2022 Zhao W, Xu F, Wang Z, Pan Z, Ye Y, Hu S, Weng B, Zhu R. Modulation of IrO Chemical Environment for Highly Efficient Oxygen Evolution in Acid. Small (Weinheim An Der Bergstrasse, Germany). e2205495. PMID 36310342 DOI: 10.1002/smll.202205495  0.052
2018 Zhao X, Xu S, Ye Y, Yu M, Wang G. Composite braking AMT shift strategy for extended-range heavy commercial electric vehicle based on LHMM/ANFIS braking intention identification Cluster Computing. 22: 8513-8528. DOI: 10.1007/s10586-018-1888-6  0.049
2001 Ye Y, Tsotsos JK. A Complexity-Level Analysis of the Sensor Planning Task for Object Search Computational Intelligence. 17: 605-620. DOI: 10.1111/0824-7935.00166  0.047
2021 Xu Y, Ye Y, Chong IT, Chen Z, Xu J, Yang Y, Yu K, Lam DCC, Yu M. A Novel Indentation Assessment to Measure Corneal Biomechanical Properties in Glaucoma and Ocular Hypertension. Translational Vision Science & Technology. 10: 36. PMID 34459861 DOI: 10.1167/tvst.10.9.36  0.044
2018 Zhao X, Ma J, Wang S, Ye Y, Wu Y, Yu M. Developing an electric vehicle urban driving cycle to study differences in energy consumption. Environmental Science and Pollution Research International. PMID 30406590 DOI: 10.1007/s11356-018-3541-6  0.039
2022 Ye Y, Chen P, Yu N, Wan L, Lan M, Zheng H, Yu K. Evaluation of Wide Corneal Epithelial Remodeling after Small Incision Lenticule Extraction (SMILE) with Wide-Field Optical Coherence Tomography. Journal of Ophthalmology. 2022: 8764103. PMID 35355880 DOI: 10.1155/2022/8764103  0.034
2010 Zhuang J, Ye Y, Liu X, Li F, Pan X, Chen Z, Luo H, Ge Y, Ge J, Kaminski J, Yu K. DNA demethylation in retinal neurocytes contributes to the upregulation of DNA repair protein, Ku80. Neuroreport. 21: 282-6. PMID 20145501 DOI: 10.1097/WNR.0b013e328336ee7e  0.034
2021 Yu N, Ye Y, Chen P, Yang Y, Zhuang J, Yu K. Corneal Epithelial Thickness Changes Following SMILE for Myopia With High Astigmatism. Journal of Refractive Surgery (Thorofare, N.J. : 1995). 37: 224-230. PMID 34038662 DOI: 10.3928/1081597X-20210126-01  0.033
2003 Pham H, Ye Y. An agent-based business automated system with self-adjusting visibility for reliability Electronic Commerce Research and Applications. 2: 97-113. DOI: 10.1016/S1567-4223(03)00016-4  0.032
2020 Zhao X, Ye Y, Ma J, Shi P, Chen H. Construction of electric vehicle driving cycle for studying electric vehicle energy consumption and equivalent emissions. Environmental Science and Pollution Research International. PMID 32394253 DOI: 10.1007/s11356-020-09094-4  0.032
2018 Zhao X, Yu Q, Ma J, Wu Y, Yu M, Ye Y. Development of a Representative EV Urban Driving Cycle Based on a k-Means and SVM Hybrid Clustering Algorithm Journal of Advanced Transportation. 2018: 1-18. DOI: 10.1155/2018/1890753  0.032
2000 Ye Y, Tsotsos JK, Harley E, Bennet K. Tracking a person with pre-recorded image database and a pan, tilt, and zoom camera Machine Vision and Applications. 12: 32-43. DOI: 10.1007/s001380050122  0.032
2022 He S, Luo Y, Ye Y, Chen P, Liu C, Lei L, Zhuang J, Yu K. A comparative and prospective study of corneal biomechanics after SMILE and FS-LASIK performed on the contralateral eyes of high myopia patients. Annals of Translational Medicine. 10: 730. PMID 35957728 DOI: 10.21037/atm-22-330  0.03
2001 Ye Y, Tsotsos JK. Knowledge granularity spectrum, action pyramid, and the scaling problem International Journal of Pattern Recognition and Artificial Intelligence. 15: 379-404. DOI: 10.1142/S0218001401000952  0.029
1997 Ye Y, Tsotsos JK, Bennet K, Harley E. Detection function and its application in visual tracking Proceedings of Spie - the International Society For Optical Engineering. 3168: 196-205. DOI: 10.1117/12.279662  0.029
2022 Ye Y, Xu Y, Yang Y, Fan Y, Liu P, Yu K, Yu M. Wide Corneal Epithelial Thickness Mapping in Eyes With Topical Antiglaucoma Therapy Using Optical Coherence Tomography. Translational Vision Science & Technology. 11: 4. PMID 34985508 DOI: 10.1167/tvst.11.1.4  0.028
2013 Yang Y, Ye Y, Lin X, Wu K, Yu M. Inhibition of pirfenidone on TGF-beta2 induced proliferation, migration and epithlial-mesenchymal transition of human lens epithelial cells line SRA01/04. Plos One. 8: e56837. PMID 23437252 DOI: 10.1371/journal.pone.0056837  0.028
2016 Cai X, Yang Y, Chen P, Ye Y, Liu X, Wu K, Yu M. Tetramethylpyrazine Attenuates Transdifferentiation of TGF-β2-Treated Human Tenon's Fibroblasts. Investigative Ophthalmology & Visual Science. 57: 4740-4748. PMID 27607420 DOI: 10.1167/iovs.16-19529  0.028
2001 Ye Y, Boies S, Huang PY, Tsotsos JK. Agents-supported adaptive group awareness: Smart distance and WWWaware Ieee Transactions On Systems, Man, and Cybernetics Part a:Systems and Humans.. 31: 369-380. DOI: 10.1109/3468.952712  0.026
2022 He S, Luo Y, Chen P, Ye Y, Zheng H, Lan M, Zhuang J, Yu K. Prospective, Randomized, Contralateral Eye Comparison of Functional Optical Zone, and Visual Quality After SMILE and FS-LASIK for High Myopia. Translational Vision Science & Technology. 11: 13. PMID 35133403 DOI: 10.1167/tvst.11.2.13  0.026
2008 Tayebi A, Abdul S, Zaremba M, Ye Y. Robust Iterative Learning Control Design: Application to a Robot Manipulator Ieee/Asme Transactions On Mechatronics. 13: 608-613. DOI: 10.1109/TMECH.2008.2004627  0.025
2022 Qiu X, Zheng S, Yang J, Yu G, Ye Y. Comparing RNA Accuracy in Various Respiratory Specimens for the Rapid Diagnosis of Pulmonary Tuberculosis. Infection and Drug Resistance. 15: 4195-4202. PMID 35946035 DOI: 10.2147/IDR.S374826  0.024
2023 Chen X, Ye Y, Yao H, Liu C, He A, Hou X, Zhao K, Cui Z, Li Y, Qiu J, Chen P, Yang Y, Zhuang J, Yu K. Predicting post-operative vault and optimal implantable collamer lens size using machine learning based on various ophthalmic device combinations. Biomedical Engineering Online. 22: 59. PMID 37322471 DOI: 10.1186/s12938-023-01123-w  0.024
2015 Yang Y, Guo X, Xu J, Ye Y, Liu X, Yu M. Phakomatosis Pigmentovascularis Associated With Sturge-Weber Syndrome, Ota Nevus, and Congenital Glaucoma. Medicine. 94: e1025. PMID 26131807 DOI: 10.1097/MD.0000000000001025  0.024
2023 Zhang J, Chen F, Han X, Qiu X, Liu Z, Chen X, Jin G, Qu B, Yao H, Ye Y, Yu K, Tan X, Luo L. Vault Height Is a Key Predictive Factor for Anterior Segment Measurement Error by IOLMaster 700 in Eyes With Phakic Intraocular Lens. Translational Vision Science & Technology. 12: 16. PMID 37738056 DOI: 10.1167/tvst.12.9.16  0.013
2023 Chen X, Wan L, Ye Y, Yao H, Cui Z, Huang Y, Wang X, Hou X, Luo Q, Qiu J, Li Y, Zhuang J, Yu K. Ocular features in myopic eyes with longer horizontal ciliary sulcus diameters for intended implantable collamer lens surgery. European Journal of Ophthalmology. 11206721231223543. PMID 38151004 DOI: 10.1177/11206721231223543  0.01
2022 Xu Y, Ye Y, Chen Z, Xu J, Yang Y, Fan Y, Liu P, Chong IT, Yu K, Lam DCC, Yu M. Corneal Stiffness and Modulus of Normal-Tension Glaucoma in Chinese: Normal-tension glaucoma, stiffer or softer? American Journal of Ophthalmology. PMID 35764102 DOI: 10.1016/j.ajo.2022.06.014  0.01
2020 Zhao X, Zhao X, Yu Q, Ye Y, Yu M. Development of a representative urban driving cycle construction methodology for electric vehicles: A case study in Xi’an Transportation Research Part D: Transport and Environment. 81: 102279. DOI: 10.1016/j.trd.2020.102279  0.01
2019 Ye Y, Yang Y, Fan Y, Lan M, Yu K, Yu M. Comparison of Biomechanically-Corrected Intraocular Pressure Obtained by Corvis ST and Goldmann Applanation Tonometry in Patients with Open-Angle Glaucoma and Ocular Hypertension. Journal of Glaucoma. PMID 31453898 DOI: 10.1097/IJG.0000000000001348  0.01
2019 Chen P, Ye Y, Yu N, Zhang X, He J, Zheng H, Wei H, Zhuang J, Yu K. Comparison of Small Incision Lenticule Extraction Surgery With and Without Cyclotorsion Error Correction for Patients With Astigmatism. Cornea. PMID 30950894 DOI: 10.1097/ICO.0000000000001937  0.01
2019 Chen P, Ye Y, Yu N, Zhang X, Zhuang J, Yu K. Correction of Astigmatism With SMILE With Axis Alignment: 6-Month Results From 622 Eyes. Journal of Refractive Surgery (Thorofare, N.J. : 1995). 35: 138-145. PMID 30855090 DOI: 10.3928/1081597X-20190124-02  0.01
2019 Wang S, Yu Q, Zhao X, Zhang S, Ye Y. Vehicle sideslip angle estimation based on SVD-UPF algorithm Journal of Intelligent & Fuzzy Systems. 37: 4563-4573. DOI: 10.3233/JIFS-179290  0.01
2016 Zhao B, Liu L, Ye Y, Hu S, Wu D, Zhang P. Enhanced hydrogen capacity and absorption rate of LaNi4.25Al0.75 alloy in impure hydrogen by a combined approach of fluorination and palladium deposition International Journal of Hydrogen Energy. 41: 3465-3469. DOI: 10.1016/j.ijhydene.2015.12.167  0.01
1997 Ye Y, Tsotsos JK. On the collaborative object search team: A formulation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1221: 94-116. DOI: 10.1007/3-540-62934-3_44  0.01
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