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Roman Agafonov, Ph.D. - Publications

Affiliations: 
2009 Physics University of Minnesota, Twin Cities, Minneapolis, MN 
Area:
General Biophysics, Medical Biophysics
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16/27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Salafsky J, Agafonov R, Donohue Vo E, Connell K, Mercado G, George T, McCormick F, Kern D. Second Harmonic Generation as a Method to Identify and Screen for Allosteric Modulators of Protein Targets Biophysical Journal. 112: 201a. DOI: 10.1016/J.Bpj.2016.11.1113  0.338
2015 Hass MA, Liu WM, Agafonov RV, Otten R, Phung LA, Schilder JT, Kern D, Ubbink M. A minor conformation of a lanthanide tag on adenylate kinase characterized by paramagnetic relaxation dispersion NMR spectroscopy. Journal of Biomolecular Nmr. 61: 123-36. PMID 25563704 DOI: 10.1007/S10858-014-9894-3  0.367
2011 Nesmelov YE, Agafonov RV, Negrashov IV, Blakely SE, Titus MA, Thomas DD. Structural kinetics of myosin by transient time-resolved FRET. Proceedings of the National Academy of Sciences of the United States of America. 108: 1891-6. PMID 21245357 DOI: 10.1073/Pnas.1012320108  0.583
2011 Agafonov RV, Blakely S, Titus MA, Thomas DD, Nesmelov YE. Functional Mutations in the Force Generation Region Destabilize the Relay Helix in Myosin Biophysical Journal. 100: 130a. DOI: 10.1016/J.Bpj.2010.12.916  0.561
2011 Mello RN, Agafonov RV, Thompson AR, Thomas DD. High-Resolution EPR of a Bifunctional Spin Label Reveals an ADP Induced Structural Rearrangement of the Actin-Bound Myosin Catalytic Domain Biophysical Journal. 100: 130a. DOI: 10.1016/J.Bpj.2010.12.915  0.647
2011 Agafonov R, Kerns J, Phung L, Kern D. Energy Landscape of Adenylate Kinase: Phosphoryl Transfer and Conformational Transitions Biophysical Journal. 100: 17a-18a. DOI: 10.1016/J.Bpj.2010.12.306  0.397
2011 Moen RJ, Smith E, Agafonov RV, Nesmelov YE, Thomas DD. High-Resolution Myosin Structure from DEER Using a Bifunctional Spin Label Biophysical Journal. 100: 146a. DOI: 10.1016/J.Bpj.2010.12.1002  0.645
2010 Agafonov RV, Negrashov IV, Blakely SE, Titus M, Nesmelov YE, Thomas DD. Structural Basis for Uncoupling of Force Generation in the F506A Dictyostelium Myosin Revealed by Time-Resolved EPR and FRET Biophysical Journal. 98: 143a. DOI: 10.1016/J.Bpj.2009.12.770  0.562
2010 Muretta J, Negrashov I, Kast D, Agafonov R, Guhathakurta P, Prochniewicz E, Nesmelov Y, Gillispie G, Thomas DD. A Time Resolved Fluorescence Spectrometer with Sub-Millisecond Data Acquisition Time Biophysical Journal. 98: 585a-586a. DOI: 10.1016/J.Bpj.2009.12.3182  0.635
2010 Agafonov RV, Negrashov IV, Blakely SE, Titus MA, Nesmelov YE, Thomas DD. Structural Dynamics by Time-Reolved EPR and Transient Time-Resolved FRET: Application to Myosin Biophysical Journal. 98: 432a. DOI: 10.1016/J.Bpj.2009.12.2345  0.62
2010 Nesmelov YE, Agafonov RV, Negrashov IV, Blakely S, Titus MA, Thomas DD. Relay Loop Stabilizes the Force-Generating Region in Myosin Biophysical Journal. 98: 215a. DOI: 10.1016/J.Bpj.2009.12.1161  0.472
2009 Agafonov RV, Negrashov IV, Tkachev YV, Blakely SE, Titus MA, Thomas DD, Nesmelov YE. Structural dynamics of the myosin relay helix by time-resolved EPR and FRET. Proceedings of the National Academy of Sciences of the United States of America. 106: 21625-30. PMID 19966224 DOI: 10.1073/Pnas.0909757106  0.582
2009 Agafonov R, Nesmelov YE, Blakely S, Titus MA, Thomas DD. Structural Dynamics of the Myosin Relay Helix Resolved by DEER and Time-Resolved FRET Biophysical Journal. 96: 493a. DOI: 10.1016/J.Bpj.2008.12.2545  0.647
2009 Nesmelov YE, Agafonov RV, Negrashov IV, Blakely S, Titus MA, Thomas DD. Transient Dynamics of the Force-Generating Domain in Myosin During the Recovery Stroke Biophysical Journal. 96: 200a. DOI: 10.1016/J.Bpj.2008.12.1077  0.555
2008 Agafonov RV, Nesmelov YE, Titus MA, Thomas DD. Muscle and nonmuscle myosins probed by a spin label at equivalent sites in the force-generating domain. Proceedings of the National Academy of Sciences of the United States of America. 105: 13397-402. PMID 18765799 DOI: 10.1073/Pnas.0801342105  0.587
2008 Nesmelov YE, Agafonov RV, Burr AR, Weber RT, Thomas DD. Structure and dynamics of the force-generating domain of myosin probed by multifrequency electron paramagnetic resonance. Biophysical Journal. 95: 247-56. PMID 18339764 DOI: 10.1529/Biophysj.107.124305  0.565
Low-probability matches (unlikely to be authored by this person)
2015 Chakrabarti KS, Agafonov RV, Pontiggia F, Otten R, Higgins MK, Schertler GF, Oprian DD, Kern D. Conformational Selection in a Protein-Protein Interaction Revealed by Dynamic Pathway Analysis. Cell Reports. PMID 26725117 DOI: 10.1016/J.Celrep.2015.12.010  0.288
2008 Tikhonov AN, Agafonov RV, Grigor'ev IA, Kirilyuk IA, Ptushenko VV, Trubitsin BV. Spin-probes designed for measuring the intrathylakoid pH in chloroplasts. Biochimica Et Biophysica Acta. 1777: 285-94. PMID 18226594 DOI: 10.1016/j.bbabio.2007.12.002  0.255
2015 Agafonov R, Wilson C, Biswas S, Kern D. Regulation of Kinases: 1 Billion Years of Evolution Biophysical Journal. 108: 381a. DOI: 10.1016/J.Bpj.2014.11.2088  0.248
2021 Eron SJ, Huang H, Agafonov RV, Fitzgerald ME, Patel J, Michael RE, Lee TD, Hart AA, Shaulsky J, Nasveschuk CG, Phillips AJ, Fisher SL, Good A. Structural Characterization of Degrader-Induced Ternary Complexes Using Hydrogen-Deuterium Exchange Mass Spectrometry and Computational Modeling: Implications for Structure-Based Design. Acs Chemical Biology. PMID 34582690 DOI: 10.1021/acschembio.1c00376  0.204
2015 Kerns SJ, Agafonov RV, Cho YJ, Pontiggia F, Otten R, Pachov DV, Kutter S, Phung LA, Murphy PN, Thai V, Alber T, Hagan MF, Kern D. The energy landscape of adenylate kinase during catalysis. Nature Structural & Molecular Biology. 22: 124-31. PMID 25580578 DOI: 10.1038/Nsmb.2941  0.188
2018 Pitsawong W, Buosi V, Otten R, Agafonov RV, Zorba A, Kern N, Kutter S, Kern G, Pádua RA, Meniche X, Kern D. Dynamics of human protein kinase Aurora A linked to drug selectivity. Elife. 7. PMID 29901437 DOI: 10.7554/Elife.36656  0.188
2014 Agafonov RV, Wilson C, Otten R, Buosi V, Kern D. Energetic dissection of Gleevec's selectivity toward human tyrosine kinases. Nature Structural & Molecular Biology. 21: 848-53. PMID 25218445 DOI: 10.1038/Nsmb.2891  0.181
2016 Nguyen V, Wilson C, Hoemberger M, Stiller JB, Agafonov RV, Kutter S, English J, Theobald DL, Kern D. Evolutionary drivers of thermoadaptation in enzyme catalysis. Science (New York, N.Y.). PMID 28008087 DOI: 10.1126/Science.Aah3717  0.141
2021 Vieux EF, Agafonov RV, Emerson L, Isasa M, Deibler RW, Simard JR, Cocozziello D, Ladd B, Lee L, Li H, Archer S, Fitzgerald M, Michael R, Nasveschuk CG, Park ES, et al. A Method for Determining the Kinetics of Small-Molecule-Induced Ubiquitination. Slas Discovery : Advancing Life Sciences R & D. 26: 547-559. PMID 33780296 DOI: 10.1177/24725552211000673  0.138
2016 Wilson C, Agafonov RV, Kern D. Drug targets evolve, and so should the methods. Molecular & Cellular Oncology. 3: e1046580. PMID 27652309 DOI: 10.1080/23723556.2015.1046580  0.072
2015 Agafonov RV, Wilson C, Kern D. Evolution and intelligent design in drug development. Frontiers in Molecular Biosciences. 2: 27. PMID 26052517 DOI: 10.3389/Fmolb.2015.00027  0.064
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