Nikolay V. Plotnikov - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
Physical Chemistry

11 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Plotnikov NV, Singh SK, Rouse JC, Kumar S. Quantifying Risks of Asparagine Deamidation and Aspartate Isomerization in Biopharmaceuticals by Computing Reaction Free Energy Surfaces. The Journal of Physical Chemistry. B. PMID 28051868 DOI: 10.1021/Acs.Jpcb.6B11614  0.392
2016 Plotnikov NV, Martinez TJ. Molecular Origin of Mechanical Sensitivity of the Reaction Rate in Anthracene Cyclophane Isomerization Reveals Structural Motifs for Rational Design of Mechanophores Journal of Physical Chemistry C. 120: 17898-17908. DOI: 10.1021/Acs.Jpcc.6B04924  0.517
2016 Ren Y, Lee S, Christensen JM, Plotnikov NV, Burgess M, Martínez TJ, Dlott DD, Moore JS. Pressure-Induced Neutral-to-Ionic Transition in an Amorphous Organic Material Chemistry of Materials. 28: 6446-6449. DOI: 10.1021/Acs.Chemmater.6B02703  0.427
2014 Plotnikov NV. Computing the Free Energy Barriers for Less by Sampling with a Coarse Reference Potential while Retaining Accuracy of the Target Fine Model. Journal of Chemical Theory and Computation. 10: 2987-3001. PMID 25136268 DOI: 10.1021/Ct500109M  0.385
2013 B RP, Plotnikov NV, Lameira J, Warshel A. Quantitative exploration of the molecular origin of the activation of GTPase. Proceedings of the National Academy of Sciences of the United States of America. 110: 20509-14. PMID 24282301 DOI: 10.1073/Pnas.1319854110  0.549
2013 Plotnikov NV, Prasad BR, Chakrabarty S, Chu ZT, Warshel A. Quantifying the mechanism of phosphate monoester hydrolysis in aqueous solution by evaluating the relevant ab initio QM/MM free-energy surfaces. The Journal of Physical Chemistry. B. 117: 12807-19. PMID 23601038 DOI: 10.1021/Jp4020146  0.629
2013 Prasad BR, Plotnikov NV, Warshel A. Addressing open questions about phosphate hydrolysis pathways by careful free energy mapping. The Journal of Physical Chemistry. B. 117: 153-63. PMID 23198768 DOI: 10.1021/Jp309778N  0.548
2012 Plotnikov NV, Warshel A. Exploring, refining, and validating the paradynamics QM/MM sampling. The Journal of Physical Chemistry. B. 116: 10342-56. PMID 22853800 DOI: 10.1021/Jp304678D  0.554
2011 Plotnikov NV, Kamerlin SC, Warshel A. Paradynamics: an effective and reliable model for ab initio QM/MM free-energy calculations and related tasks. The Journal of Physical Chemistry. B. 115: 7950-62. PMID 21618985 DOI: 10.1021/Jp201217B  0.626
2010 Victorov AI, Plotnikov NV, Hong PD. Molecular thermodynamic modeling of the morphology transitions in a solution of a diblock copolymer containing a weak polyelectrolyte chain Journal of Physical Chemistry B. 114: 8846-8860. PMID 20560607 DOI: 10.1021/Jp100987H  0.602
2007 Plotnikov N, Victorov A. Mesoscale morphology and dissociation equilibrium in pH-sensitive block copolymer gels Fluid Phase Equilibria. 261: 26-34. DOI: 10.1016/J.Fluid.2007.07.050  0.601
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