Shang-Te Danny Hsu - Publications

Affiliations: 
Institute of Biological Chemistry Academia Sinica, Moni Vatopediou, Taipei City, Taiwan 

36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Lai CH, Ko KT, Fan PJ, Yu TA, Chang CF, Draczkowski P, Hsu SD. Structural Insight into the ZFAND1-p97 Interaction Involved in Stress Granule Clearance. The Journal of Biological Chemistry. 107230. PMID 38537699 DOI: 10.1016/j.jbc.2024.107230  0.723
2024 Tsai YX, Chang NE, Reuter K, Chang HT, Yang TJ, von Bülow S, Sehrawat V, Zerrouki N, Tuffery M, Gecht M, Grothaus IL, Colombi Ciacchi L, Wang YS, Hsu MF, Khoo KH, ... ... Hsu SD, et al. Rapid simulation of glycoprotein structures by grafting and steric exclusion of glycan conformer libraries. Cell. 187: 1296-1311.e26. PMID 38428397 DOI: 10.1016/j.cell.2024.01.034  0.344
2024 Sriramoju MK, Ko KT, Hsu SD. Tying a true topological protein knot by cyclization. Biochemical and Biophysical Research Communications. 696: 149470. PMID 38244314 DOI: 10.1016/j.bbrc.2024.149470  0.349
2023 Hsu SD. Folding and functions of knotted proteins. Current Opinion in Structural Biology. 83: 102709. PMID 37778185 DOI: 10.1016/j.sbi.2023.102709  0.343
2023 Puri S, Liu CY, Hu IC, Lai CH, Hsu SD, Lyu PC. Elucidation of the folding pathway of a circular permutant of topologically knotted YbeA by tryptophan substitutions. Biochemical and Biophysical Research Communications. 672: 81-88. PMID 37343318 DOI: 10.1016/j.bbrc.2023.06.021  0.348
2022 Puri S, Hsu SD. Elucidation of folding pathways of knotted proteins. Methods in Enzymology. 675: 275-297. PMID 36220273 DOI: 10.1016/bs.mie.2022.07.012  0.302
2022 Huang CY, Draczkowski P, Wang YS, Chang CY, Chien YC, Cheng YH, Wu YM, Wang CH, Chang YC, Chang YC, Yang TJ, Tsai YX, Khoo KH, Chang HW, Hsu SD. In situ structure and dynamics of an alphacoronavirus spike protein by cryo-ET and cryo-EM. Nature Communications. 13: 4877. PMID 35986008 DOI: 10.1038/s41467-022-32588-3  0.719
2021 Hsu SD, Lee YC, Mikula KM, Backlund SM, Tascón I, Goldman A, Iwaï H. Tying up the Loose Ends: A Mathematically Knotted Protein. Frontiers in Chemistry. 9: 663241. PMID 34109153 DOI: 10.3389/fchem.2021.663241  0.389
2021 Chiu YH, Ko KT, Yang TJ, Wu KP, Ho MR, Draczkowski P, Hsu SD. Direct Visualization of a 26 kDa Protein by Cryo-Electron Microscopy Aided by a Small Scaffold Protein. Biochemistry. PMID 33719392 DOI: 10.1021/acs.biochem.0c00961  0.717
2020 Yang TJ, Chang YC, Ko TP, Draczkowski P, Chien YC, Chang YC, Wu KP, Khoo KH, Chang HW, Hsu SD. Cryo-EM analysis of a feline coronavirus spike protein reveals a unique structure and camouflaging glycans. Proceedings of the National Academy of Sciences of the United States of America. PMID 31900356 DOI: 10.1073/Pnas.1908898117  0.739
2019 Lin HH, Yu M, Sriramoju MK, Hsu SD, Liu CT, Lai EM. A High-Throughput Interbacterial Competition Screen Identifies ClpAP in Enhancing Recipient Susceptibility to Type VI Secretion System-Mediated Attack by . Frontiers in Microbiology. 10: 3077. PMID 32117077 DOI: 10.3389/Fmicb.2019.03077  0.371
2019 Sriramoju MK, Chen Y, Hsu SD. Protein knots provide mechano-resilience to an AAA+ protease-mediated proteolysis with profound ATP energy expenses. Biochimica Et Biophysica Acta. Proteins and Proteomics. 140330. PMID 31756432 DOI: 10.1016/J.Bbapap.2019.140330  0.459
2019 Ko KT, Hu IC, Huang KF, Lyu PC, Hsu SD. Untying a Knotted SPOUT RNA Methyltransferase by Circular Permutation Results in a Domain-Swapped Dimer. Structure (London, England : 1993). PMID 31104814 DOI: 10.1016/J.Str.2019.04.004  0.366
2019 Chuang YC, Hu IC, Lyu PC, Hsu SD. Untying a Protein Knot by Circular Permutation. Journal of Molecular Biology. PMID 30639189 DOI: 10.1016/j.jmb.2019.01.005  0.425
2019 Chuang Y, Hu I, Lyu P, Hsu SD. Untying a Protein Knot by Circular Permutation. Journal of Molecular Biology. 431: 857-863. DOI: 10.2210/Pdb6Ahw/Pdb  0.426
2018 Huang PJ, Low PY, Wang I, Hsu SD, Angata T. Soluble Siglec-14 glycan-recognition protein is generated by alternative splicing and suppresses myeloid inflammatory responses. The Journal of Biological Chemistry. PMID 30377253 DOI: 10.1074/Jbc.Ra118.005676  0.433
2018 Sriramoju MK, Yang TJ, Hsu SD. Comparative folding analyses of unknotted versus trefoil-knotted ornithine transcarbamylases suggest stabilizing effects of protein knots. Biochemical and Biophysical Research Communications. PMID 29920242 DOI: 10.1016/J.Bbrc.2018.06.082  0.49
2018 Dudev T, Grauffel C, Hsu SD, Lim C. How native and non-native cations bind and modulate the properties of GTP/ATP. Journal of Chemical Theory and Computation. PMID 29768917 DOI: 10.1021/Acs.Jctc.8B00259  0.369
2018 Sriramoju MK, Chen Y, Lee YC, Hsu SD. Topologically knotted deubiquitinases exhibit unprecedented mechanostability to withstand the proteolysis by an AAA+ protease. Scientific Reports. 8: 7076. PMID 29728659 DOI: 10.1038/S41598-018-25470-0  0.477
2018 Lee YC, Hsu SD. A Natively Monomeric Deubiquitinase UCH-L1 Forms Highly Dynamic but Defined Metastable Oligomeric Folding Intermediates. The Journal of Physical Chemistry Letters. PMID 29688017 DOI: 10.1021/Acs.Jpclett.8B00815  0.438
2018 Chan YC, Lin HY, Tu Z, Kuo YH, Hsu SD, Lin CH. Dissecting the Structure-Activity Relationship of Galectin-Ligand Interactions. International Journal of Molecular Sciences. 19. PMID 29382172 DOI: 10.3390/Ijms19020392  0.367
2017 Chien CH, Ho MR, Lin CH, Hsu SD. Lactose Binding Induces Opposing Dynamics Changes in Human Galectins Revealed by NMR-Based Hydrogen-Deuterium Exchange. Molecules (Basel, Switzerland). 22. PMID 28813004 DOI: 10.3390/Molecules22081357  0.37
2017 Lee YC, Chang CY, Chen SY, Pan YR, Ho MR, Hsu SD. Entropic stabilization of a deubiquitinase provides conformational plasticity and slow unfolding kinetics beneficial for functioning on the proteasome. Scientific Reports. 7: 45174. PMID 28338014 DOI: 10.1038/Srep45174  0.313
2016 Hsu SD. Protein knotting through concatenation significantly reduces folding stability. Scientific Reports. 6: 39357. PMID 27982106 DOI: 10.1038/Srep39357  0.455
2016 Wang I, Chen SY, Hsu SD. Folding analysis of the most complex Stevedore's protein knot. Scientific Reports. 6: 31514. PMID 27527519 DOI: 10.1038/Srep31514  0.394
2016 Lou SC, Wetzel S, Zhang H, Crone EW, Lee YT, Jackson SE, Hsu SD. The knotted protein UCH-L1 exhibits partially unfolded forms under native conditions that share common structural features with its kinetic folding intermediates. Journal of Molecular Biology. PMID 27067109 DOI: 10.1016/J.Jmb.2016.04.002  0.399
2016 Liao JH, Chien CT, Wu HY, Huang KF, Wang I, Ho MR, Tu IF, Lee IM, Li W, Shih YL, Wu CY, Lukyanov PA, Hsu SD, Wu SH. A multivalent marine lectin from Crenomytilus grayanus possesses anti-cancer activity through recognizing globotriose Gb3. Journal of the American Chemical Society. PMID 27010847 DOI: 10.1021/Jacs.6B00111  0.34
2015 Huang CT, Hsu SD. NMR assignments of the peptidyl-prolyl cis-trans isomerase domain of trigger factor from E. coli. Biomolecular Nmr Assignments. PMID 26527152 DOI: 10.1007/S12104-015-9655-6  0.386
2015 Chang TW, Wang CF, Huang HJ, Wang I, Hsu SD, Liao YD. Key residues of outer membrane protein OprI involved in hexamer formation and bacterial susceptibility to cationic antimicrobial peptides. Antimicrobial Agents and Chemotherapy. PMID 26248382 DOI: 10.1128/Aac.01406-15  0.323
2015 Liu CG, Chien CH, Lin CH, Hsu SD. NMR assignments of the C-terminal domain of human galectin-8. Biomolecular Nmr Assignments. PMID 26126590 DOI: 10.1007/S12104-015-9623-1  0.384
2014 Huang C, Zhu Z, Cheng Y, Chan H, Ko T, Chen C, Wang I, Ho M, Hsu SD, Zeng Y, Huang Y, Liu J, Guo R. Structure and Catalytic Mechanism of a Glycoside Hydrolase Family-127 β-L-Arabinofuranosidase (HypBA1) Journal of Bioprocessing & Biotechniques. 4: 1-7. DOI: 10.4172/2155-9821.1000171  0.389
2005 Ekkelenkamp MB, Hanssen M, Hsu SD, Jong Ad, Milatovic D, Verhoef J, Nuland NAJv. Isolation and structural characterization of epilancin 15X, a novel lantibiotic from a clinical strain of Staphylococcus epidermidis Febs Letters. 579: 1917-1922. PMID 15792796 DOI: 10.1016/J.Febslet.2005.01.083  0.369
2004 Hsu S, Breukink E, Tischenko E, Lutters M, Kruijff Bd, Kaptein R, Bonvin A, Nuland Nv. The pyrophosphate cage: the structure of the nisin/lipid II complex provides a blueprint for novel antibiotics Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb1Uzt/Pdb  0.695
2003 Hsu S, Breukink E, Bierbaum G, Sahl H, Kruijff Bd, Kaptein R, Nuland Nv, Bonvin A. NMR solution structure of type-B lantibiotics mersacidin in DPC micelles Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb1Mqy/Pdb  0.723
2003 Hsu S, Breukink E, Bierbaum G, Sahl H, Kruijff Bd, Kaptein R, Nuland Nv, Bonvin A. NMR solution structure of type-B lantibiotics mersacidin in MeOH/H2O mixture Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5581  0.721
2003 Hsu S, Breukink E, Bierbaum G, Sahl H, Kruijff Bd, Kaptein R, Nuland Nv, Bonvin A. NMR solution structure of type-B lantibiotics mersacidin bound to lipid II in DPC micelles Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5580  0.726
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