| Year |
Citation |
Score |
| 2020 |
Lavy O, Gophna U, Gefen E, Ayali A. Dynamics of bacterial composition in the locust reproductive tract are affected by the density-dependent phase. Fems Microbiology Ecology. 96. PMID 32175575 DOI: 10.1093/Femsec/Fiaa044 |
0.32 |
|
| 2019 |
Turgeman-Grott I, Joseph S, Marton S, Eizenshtein K, Naor A, Soucy SM, Stachler AE, Shalev Y, Zarkor M, Reshef L, Altman-Price N, Marchfelder A, Gophna U. Pervasive acquisition of CRISPR memory driven by inter-species mating of archaea can limit gene transfer and influence speciation. Nature Microbiology. 4: 177-186. PMID 30478289 DOI: 10.1038/S41564-018-0302-8 |
0.353 |
|
| 2018 |
Yair Y, Gophna U. Pandemic Bacteremic Escherichia Coli Strains: Evolution and Emergence of Drug-Resistant Pathogens. Current Topics in Microbiology and Immunology. 416: 163-180. PMID 30046983 DOI: 10.1007/82_2018_109 |
0.303 |
|
| 2018 |
Shulman A, Yair Y, Biran D, Sura T, Otto A, Gophna U, Becher D, Hecker M, Ron EZ. The Escherichia coli Type III Secretion System 2 Has a Global Effect on Cell Surface. Mbio. 9. PMID 29970469 DOI: 10.1128/Mbio.01070-18 |
0.364 |
|
| 2018 |
Shalev Y, Soucy SM, Papke RT, Gogarten JP, Eichler J, Gophna U. Comparative Analysis of Surface Layer Glycoproteins and Genes Involved in Protein Glycosylation in the Genus Haloferax. Genes. 9. PMID 29558455 DOI: 10.3390/Genes9030172 |
0.326 |
|
| 2018 |
Yitzhaki S, Reshef L, Gophna U, Rosenberg M, Sterer N. Microbiome associated with denture malodour. Journal of Breath Research. 12: 027103. PMID 29341956 DOI: 10.1088/1752-7163/Aa95E0 |
0.326 |
|
| 2017 |
Shalev Y, Turgeman-Grott I, Tamir A, Eichler J, Gophna U. Cell Surface Glycosylation Is Required for Efficient Mating of . Frontiers in Microbiology. 8: 1253. PMID 28725221 DOI: 10.3389/Fmicb.2017.01253 |
0.302 |
|
| 2017 |
Artieri CG, Naor A, Turgeman-Grott I, Zhou Y, York R, Gophna U, Fraser HB. Cis-regulatory evolution in prokaryotes revealed by interspecific archaeal hybrids. Scientific Reports. 7: 3986. PMID 28638059 DOI: 10.1038/S41598-017-04278-4 |
0.323 |
|
| 2017 |
Gophna U, Allers T, Marchfelder A. Finally, Archaea Get Their CRISPR-Cas Toolbox. Trends in Microbiology. 25: 430-432. PMID 28391963 DOI: 10.1016/J.Tim.2017.03.009 |
0.304 |
|
| 2017 |
Gophna U, Konikoff T, Nielsen HB. Oscillospira and related bacteria - From metagenomic species to metabolic features. Environmental Microbiology. 19: 835-841. PMID 28028921 DOI: 10.1111/1462-2920.13658 |
0.394 |
|
| 2016 |
Oberhardt MA, Zarecki R, Reshef L, Xia F, Duran-Frigola M, Schreiber R, Henry CS, Ben-Tal N, Dwyer DJ, Gophna U, Ruppin E. Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5'-Phosphate Production in E. coli. Plos Computational Biology. 12: e1004705. PMID 26821166 DOI: 10.1371/Journal.Pcbi.1004705 |
0.333 |
|
| 2015 |
Adato O, Ninyo N, Gophna U, Snir S. Detecting Horizontal Gene Transfer between Closely Related Taxa. Plos Computational Biology. 11: e1004408. PMID 26439115 DOI: 10.1371/Journal.Pcbi.1004408 |
0.383 |
|
| 2015 |
Keren N, Konikoff FM, Paitan Y, Gabay G, Reshef L, Naftali T, Gophna U. Interactions between the intestinal microbiota and bile acids in gallstones patients. Environmental Microbiology Reports. PMID 26149537 DOI: 10.1111/1758-2229.12319 |
0.321 |
|
| 2015 |
Roterman YR, Benayahu Y, Reshef L, Gophna U. The gill microbiota of invasive and indigenous Spondylus oysters from the Mediterranean Sea and northern Red Sea. Environmental Microbiology Reports. 7: 860-7. PMID 26111733 DOI: 10.1111/1758-2229.12315 |
0.312 |
|
| 2015 |
Lurie-Weinberger MN, Gophna U. Archaea in and on the Human Body: Health Implications and Future Directions. Plos Pathogens. 11: e1004833. PMID 26066650 DOI: 10.1371/Journal.Ppat.1004833 |
0.326 |
|
| 2015 |
Reshef L, Kovacs A, Ofer A, Yahav L, Maharshak N, Keren N, Konikoff FM, Tulchinsky H, Gophna U, Dotan I. Pouch Inflammation Is Associated With a Decrease in Specific Bacterial Taxa. Gastroenterology. 149: 718-27. PMID 26026389 DOI: 10.1053/J.Gastro.2015.05.041 |
0.307 |
|
| 2015 |
Gophna U, Kristensen DM, Wolf YI, Popa O, Drevet C, Koonin EV. No evidence of inhibition of horizontal gene transfer by CRISPR-Cas on evolutionary timescales. The Isme Journal. 9: 2021-7. PMID 25710183 DOI: 10.1038/Ismej.2015.20 |
0.321 |
|
| 2014 |
Eilam O, Zarecki R, Oberhardt M, Ursell LK, Kupiec M, Knight R, Gophna U, Ruppin E. Glycan degradation (GlyDeR) analysis predicts mammalian gut microbiota abundance and host diet-specific adaptations. Mbio. 5. PMID 25118239 DOI: 10.1128/Mbio.01526-14 |
0.343 |
|
| 2014 |
Zarecki R, Oberhardt MA, Reshef L, Gophna U, Ruppin E. A novel nutritional predictor links microbial fastidiousness with lowered ubiquity, growth rate, and cooperativeness. Plos Computational Biology. 10: e1003726. PMID 25033033 DOI: 10.1371/Journal.Pcbi.1003726 |
0.344 |
|
| 2014 |
Pelchovich G, Nadejda S, Dana A, Tuller T, Bravo IG, Gophna U. Ribosomal mutations affecting the translation of genes that use non-optimal codons. The Febs Journal. 281: 3701-18. PMID 24966114 DOI: 10.1111/Febs.12892 |
0.345 |
|
| 2014 |
Amir I, Bouvet P, Legeay C, Gophna U, Weinberger A. Eisenbergiella tayi gen. nov., sp. nov., isolated from human blood International Journal of Systematic and Evolutionary Microbiology. 64: 907-914. PMID 24282142 DOI: 10.1099/Ijs.0.057331-0 |
0.305 |
|
| 2014 |
Shifman A, Ninyo N, Gophna U, Snir S. Phylo SI: a new genome-wide approach for prokaryotic phylogeny. Nucleic Acids Research. 42: 2391-404. PMID 24243847 DOI: 10.1093/Nar/Gkt1138 |
0.347 |
|
| 2014 |
Pasternak Z, Njagi M, Shani Y, Chanyi R, Rotem O, Lurie-Weinberger MN, Koval S, Pietrokovski S, Gophna U, Jurkevitch E. In and out: an analysis of epibiotic vs periplasmic bacterial predators. The Isme Journal. 8: 625-635. PMID 24088628 DOI: 10.1038/Ismej.2013.164 |
0.366 |
|
| 2013 |
Wagner A, Zarecki R, Reshef L, Gochev C, Sorek R, Gophna U, Ruppin E. Computational evaluation of cellular metabolic costs successfully predicts genes whose expression is deleterious. Proceedings of the National Academy of Sciences of the United States of America. 110: 19166-71. PMID 24198337 DOI: 10.1073/Pnas.1312361110 |
0.351 |
|
| 2013 |
Kaminski L, Lurie-Weinberger MN, Allers T, Gophna U, Eichler J. Phylogenetic- and genome-derived insight into the evolution of N-glycosylation in Archaea. Molecular Phylogenetics and Evolution. 68: 327-39. PMID 23567024 DOI: 10.1016/J.Ympev.2013.03.024 |
0.364 |
|
| 2013 |
Pasternak Z, Pietrokovski S, Rotem O, Gophna U, Lurie-Weinberger MN, Jurkevitch E. By their genes ye shall know them: genomic signatures of predatory bacteria. The Isme Journal. 7: 756-69. PMID 23190728 DOI: 10.1038/Ismej.2012.149 |
0.388 |
|
| 2013 |
Naor A, Gophna U. Cell fusion and hybrids in Archaea: prospects for genome shuffling and accelerated strain development for biotechnology Bioengineered. 4: 126-129. PMID 23111319 DOI: 10.4161/Bioe.22649 |
0.375 |
|
| 2012 |
Lurie-Weinberger MN, Peeri M, Tuller T, Gophna U. Extensive Inter-Domain Lateral Gene Transfer in the Evolution of the Human Commensal Methanosphaera stadtmanae. Frontiers in Genetics. 3: 182. PMID 23049536 DOI: 10.3389/Fgene.2012.00182 |
0.381 |
|
| 2012 |
Naor A, Thiaville PC, Altman-Price N, Cohen-Or I, Allers T, de Crécy-Lagard V, Gophna U. A genetic investigation of the KEOPS complex in Halophilic Archaea Plos One. 7. PMID 22927945 DOI: 10.1371/Journal.Pone.0043013 |
0.326 |
|
| 2012 |
Gophna U, Brodt A. CRISPR/Cas systems in archaea: What array spacers can teach us about parasitism and gene exchange in the 3rd domain of life. Mobile Genetic Elements. 2: 63-64. PMID 22754756 DOI: 10.4161/Mge.19907 |
0.339 |
|
| 2012 |
Naor A, Lapierre P, Mevarech M, Papke RT, Gophna U. Low species barriers in halophilic archaea and the formation of recombinant hybrids. Current Biology : Cb. 22: 1444-8. PMID 22748314 DOI: 10.1016/J.Cub.2012.05.056 |
0.368 |
|
| 2012 |
Lurie-Weinberger MN, Peeri M, Gophna U. Contribution of lateral gene transfer to the gene repertoire of a gut-adapted methanogen. Genomics. 99: 52-8. PMID 22056789 DOI: 10.1016/J.Ygeno.2011.10.005 |
0.404 |
|
| 2011 |
Brodt A, Lurie-Weinberger MN, Gophna U. CRISPR loci reveal networks of gene exchange in archaea. Biology Direct. 6: 65. PMID 22188759 DOI: 10.1186/1745-6150-6-65 |
0.31 |
|
| 2011 |
Freilich S, Zarecki R, Eilam O, Segal ES, Henry CS, Kupiec M, Gophna U, Sharan R, Ruppin E. Competitive and cooperative metabolic interactions in bacterial communities. Nature Communications. 2: 589. PMID 22158444 DOI: 10.1038/Ncomms1597 |
0.324 |
|
| 2011 |
Gophna U. Microbiology. The guts of dietary habits. Science (New York, N.Y.). 334: 45-6. PMID 21980098 DOI: 10.1126/Science.1213799 |
0.314 |
|
| 2011 |
Zurel D, Benayahu Y, Or A, Kovacs A, Gophna U. Composition and dynamics of the gill microbiota of an invasive Indo-Pacific oyster in the eastern Mediterranean Sea. Environmental Microbiology. 13: 1467-76. PMID 21635673 DOI: 10.1111/J.1462-2920.2011.02448.X |
0.317 |
|
| 2011 |
Zhang X, Kupiec M, Gophna U, Tuller T. Analysis of coevolving gene families using mutually exclusive orthologous modules. Genome Biology and Evolution. 3: 413-23. PMID 21498882 DOI: 10.1093/Gbe/Evr030 |
0.348 |
|
| 2011 |
Tuller T, Girshovich Y, Sella Y, Kreimer A, Freilich S, Kupiec M, Gophna U, Ruppin E. Association between translation efficiency and horizontal gene transfer within microbial communities. Nucleic Acids Research. 39: 4743-55. PMID 21343180 DOI: 10.1093/Nar/Gkr054 |
0.4 |
|
| 2011 |
Naor A, Lazary R, Barzel A, Papke RT, Gophna U. In Vivo characterization of the homing endonuclease within the polB gene in the halophilic archaeon Haloferax volcanii Plos One. 6. PMID 21283796 DOI: 10.1371/Journal.Pone.0015833 |
0.38 |
|
| 2011 |
Kovacs A, Ben-Jacob N, Tayem H, Halperin E, Iraqi FA, Gophna U. Genotype is a stronger determinant than sex of the mouse gut microbiota. Microbial Ecology. 61: 423-8. PMID 21181142 DOI: 10.1007/S00248-010-9787-2 |
0.31 |
|
| 2011 |
Gophna U, Ofran Y. Lateral acquisition of genes is affected by the friendliness of their products. Proceedings of the National Academy of Sciences of the United States of America. 108: 343-8. PMID 21149709 DOI: 10.1073/Pnas.1009775108 |
0.347 |
|
| 2011 |
Cohen O, Gophna U, Pupko T. The complexity hypothesis revisited: connectivity rather than function constitutes a barrier to horizontal gene transfer. Molecular Biology and Evolution. 28: 1481-9. PMID 21149642 DOI: 10.1093/Molbev/Msq333 |
0.372 |
|
| 2010 |
Katz C, Cohen-Or I, Gophna U, Ron EZ. The ubiquitous conserved glycopeptidase Gcp prevents accumulation of toxic glycated proteins. Mbio. 1. PMID 20824107 DOI: 10.1128/Mbio.00195-10 |
0.311 |
|
| 2010 |
Omer S, Kovacs A, Mazor Y, Gophna U. Integration of a foreign gene into a native complex does not impair fitness in an experimental model of lateral gene transfer. Molecular Biology and Evolution. 27: 2441-5. PMID 20554693 DOI: 10.1093/Molbev/Msq145 |
0.347 |
|
| 2010 |
Lurie-Weinberger MN, Gomez-Valero L, Merault N, Glöckner G, Buchrieser C, Gophna U. The origins of eukaryotic-like proteins in Legionella pneumophila. International Journal of Medical Microbiology : Ijmm. 300: 470-81. PMID 20537944 DOI: 10.1016/J.Ijmm.2010.04.016 |
0.417 |
|
| 2010 |
Stern A, Mayrose I, Penn O, Shaul S, Gophna U, Pupko T. An evolutionary analysis of lateral gene transfer in thymidylate synthase enzymes. Systematic Biology. 59: 212-25. PMID 20525631 DOI: 10.1093/Sysbio/Syp104 |
0.331 |
|
| 2010 |
Voges M, Bachmann V, Kammerer R, Gophna U, Hauck CR. CEACAM1 recognition by bacterial pathogens is species-specific. Bmc Microbiology. 10: 117. PMID 20406467 DOI: 10.1186/1471-2180-10-117 |
0.303 |
|
| 2010 |
Freilich S, Kreimer A, Borenstein E, Gophna U, Sharan R, Ruppin E. Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species. Plos Computational Biology. 6: e1000690. PMID 20195496 DOI: 10.1371/Journal.Pcbi.1000690 |
0.33 |
|
| 2010 |
Kovacs A, Yacoby K, Gophna U. A systematic assessment of automated ribosomal intergenic spacer analysis (ARISA) as a tool for estimating bacterial richness. Research in Microbiology. 161: 192-7. PMID 20138144 DOI: 10.1016/J.Resmic.2010.01.006 |
0.349 |
|
| 2009 |
Albert EJ, Sommerfeld K, Gophna S, Marshall JS, Gophna U. The gut microbiota of toll-like receptor 2-deficient mice exhibits lineage-specific modifications. Environmental Microbiology Reports. 1: 65-70. PMID 23765722 DOI: 10.1111/J.1758-2229.2008.00006.X |
0.308 |
|
| 2009 |
Freilich S, Kreimer A, Borenstein E, Yosef N, Sharan R, Gophna U, Ruppin E. Metabolic-network-driven analysis of bacterial ecological strategies. Genome Biology. 10: R61. PMID 19500338 DOI: 10.1186/Gb-2009-10-6-R61 |
0.307 |
|
| 2009 |
Gophna U. Complexity Apparently Is Not a Barrier to Lateral Gene Transfers Microbe Magazine. 4: 549-553. DOI: 10.1128/Microbe.4.549.1 |
0.391 |
|
| 2008 |
Cohen O, Rubinstein ND, Stern A, Gophna U, Pupko T. A likelihood framework to analyse phyletic patterns. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 363: 3903-11. PMID 18852099 DOI: 10.1098/Rstb.2008.0177 |
0.361 |
|
| 2008 |
Wellner A, Gophna U. Neutrality of Foreign Complex Subunits in an Experimental Model of Lateral Gene Transfer Molecular Biology and Evolution. 25: 1835-1840. PMID 18550618 DOI: 10.1093/Molbev/Msn131 |
0.36 |
|
| 2007 |
Wellner A, Lurie MN, Gophna U. Complexity, connectivity, and duplicability as barriers to lateral gene transfer Genome Biology. 8. PMID 17678544 DOI: 10.1186/Gb-2007-8-8-R156 |
0.376 |
|
| 2006 |
Gophna U, Sommerfeld K, Gophna S, Doolittle WF, Veldhuyzen van Zanten SJ. Differences between tissue-associated intestinal microfloras of patients with Crohn's disease and ulcerative colitis. Journal of Clinical Microbiology. 44: 4136-41. PMID 16988016 DOI: 10.1128/Jcm.01004-06 |
0.524 |
|
| 2006 |
Gophna U, Charlebois RL, Doolittle WF. Ancient lateral gene transfer in the evolution of Bdellovibrio bacteriovorus. Trends in Microbiology. 14: 64-9. PMID 16413191 DOI: 10.1016/J.Tim.2005.12.008 |
0.567 |
|
| 2006 |
Gophna U, Thompson JR, Boucher Y, Doolittle WF. Complex histories of genes encoding 3-hydroxy-3-methylglutaryl-CoenzymeA reductase. Molecular Biology and Evolution. 23: 168-78. PMID 16162862 DOI: 10.1093/Molbev/Msj019 |
0.646 |
|
| 2005 |
Ideses D, Gophna U, Paitan Y, Chaudhuri RR, Pallen MJ, Ron EZ. A Degenerate Type III Secretion System from Septicemic Escherichia coli Contributes to Pathogenesis Journal of Bacteriology. 187: 8164-8171. PMID 16291689 DOI: 10.1128/Jb.187.23.8164-8171.2005 |
0.375 |
|
| 2005 |
Mokady D, Gophna U, Ron EZ. Virulence factors of septicemic Escherichia coli strains. International Journal of Medical Microbiology. 295: 455-462. PMID 16238019 DOI: 10.1016/J.Ijmm.2005.07.007 |
0.345 |
|
| 2005 |
Ideses D, Biran D, Gophna U, Levy-Nissenbaum O, Ron EZ. The lpf operon of invasive Escherichia coli. International Journal of Medical Microbiology. 295: 227-236. PMID 16128397 DOI: 10.1016/J.Ijmm.2005.04.009 |
0.324 |
|
| 2005 |
Gophna U, Bapteste E, Doolittle WF, Biran D, Ron EZ. Evolutionary plasticity of methionine biosynthesis. Gene. 355: 48-57. PMID 16046084 DOI: 10.1016/J.Gene.2005.05.028 |
0.552 |
|
| 2005 |
Gophna U, Doolittle WF, Charlebois RL. Weighted genome trees: refinements and applications. Journal of Bacteriology. 187: 1305-16. PMID 15687194 DOI: 10.1128/Jb.187.4.1305-1316.2005 |
0.531 |
|
| 2005 |
Mokady D, Gophna U, Ron EZ. Extensive Gene Diversity in Septicemic Escherichia coli Strains Journal of Clinical Microbiology. 43: 66-73. PMID 15634952 DOI: 10.1128/Jcm.43.1.66-73.2005 |
0.334 |
|
| 2004 |
Gophna U, Ideses D, Rosen R, Grundland A, Ron EZ. OmpA of a septicemic Escherichia coli O78--secretion and convergent evolution. International Journal of Medical Microbiology. 294: 373-381. PMID 15595387 DOI: 10.1016/J.Ijmm.2004.08.004 |
0.324 |
|
| 2004 |
Gophna U, Charlebois RL, Doolittle WF. Have archaeal genes contributed to bacterial virulence? Trends in Microbiology. 12: 213-9. PMID 15120140 DOI: 10.1016/J.Tim.2004.03.002 |
0.583 |
|
| 2003 |
Gophna U, Ron EZ, Graur D. Bacterial type III secretion systems are ancient and evolved by multiple horizontal-transfer events. Gene. 312: 151-63. PMID 12909351 DOI: 10.1016/S0378-1119(03)00612-7 |
0.383 |
|
| 2003 |
Adiri RS, Gophna U, Ron EZ. Multilocus sequence typing (MLST) of Escherichia coli O78 strains Fems Microbiology Letters. 222: 199-203. PMID 12770708 DOI: 10.1016/S0378-1097(03)00295-7 |
0.313 |
|
| 2003 |
Gophna U, Parket A, Hacker J, Ron EZ. A novel ColV plasmid encoding type IV pili. Microbiology. 149: 177-184. PMID 12576591 DOI: 10.1099/Mic.0.25858-0 |
0.363 |
|
| 2001 |
Gophna U, Oelschlaeger TA, Hacker J, Ron EZ. Yersinia HPI in septicemic Escherichia coli strains isolated from diverse hosts. Fems Microbiology Letters. 196: 57-60. PMID 11257548 DOI: 10.1111/J.1574-6968.2001.Tb10540.X |
0.332 |
|
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