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Armando Pinho - Publications

Affiliations: 
Universidade de Aveiro, Portugal 
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Bastos CAC, Afreixo V, Rodrigues JMOS, Pinho AJ. Concentration of inverted repeats along human DNA. Journal of Integrative Bioinformatics. PMID 37486620 DOI: 10.1515/jib-2022-0052  0.711
2020 Silva M, Pratas D, Pinho AJ. Efficient DNA sequence compression with neural networks. Gigascience. 9. PMID 33179040 DOI: 10.1093/gigascience/giaa119  0.34
2019 Bastos CAC, Afreixo V, Rodrigues JMOS, Pinho AJ, Silva RM. Distribution of Distances Between Symmetric Words in the Human Genome: Analysis of Regular Peaks. Interdisciplinary Sciences, Computational Life Sciences. PMID 30911903 DOI: 10.1007/s12539-019-00326-x  0.719
2018 Pratas D, Silva RM, Pinho AJ. Comparison of Compression-Based Measures with Application to the Evolution of Primate Genomes. Entropy (Basel, Switzerland). 20. PMID 33265483 DOI: 10.3390/e20060393  0.406
2018 Pratas D, Hosseini M, Grilo G, Pinho AJ, Silva RM, Caetano T, Carneiro J, Pereira F. Metagenomic Composition Analysis of an Ancient Sequenced Polar Bear Jawbone from Svalbard. Genes. 9. PMID 30200636 DOI: 10.3390/genes9090445  0.356
2017 Tavares AH, Raymaekers J, Rousseeuw PJ, Silva RM, Bastos CAC, Pinho A, Brito P, Afreixo V. Comparing Reverse Complementary Genomic Words Based on Their Distance Distributions and Frequencies. Interdisciplinary Sciences, Computational Life Sciences. PMID 29214497 DOI: 10.1007/S12539-017-0273-0  0.716
2017 Tavares AH, Pinho AJ, Silva RM, Rodrigues JM, Bastos CA, Ferreira PJ, Afreixo V. DNA word analysis based on the distribution of the distances between symmetric words. Scientific Reports. 7: 728. PMID 28389642 DOI: 10.1038/s41598-017-00646-2  0.731
2015 Pratas D, Silva RM, Pinho AJ, Ferreira PJ. An alignment-free method to find and visualise rearrangements between pairs of DNA sequences. Scientific Reports. 5: 10203. PMID 25984837 DOI: 10.1038/srep10203  0.408
2013 Bastos CAC, Afreixo V, Garcia SP, Pinho AJ. Inter-STOP symbol distances for the identification of coding regions. Journal of Integrative Bioinformatics. 10: 31-39. PMID 29220927 DOI: 10.1515/jib-2013-230  0.717
2013 Garcia SP, Rodrigues JM, Santos S, Pratas D, Afreixo V, Bastos CA, Ferreira PJ, Pinho AJ. A genomic distance for assembly comparison based on compressed maximal exact matches. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 10: 793-8. PMID 25594089 DOI: 10.1109/TCBB.2013.77  0.708
2013 Pinho AJ, Garcia SP, Pratas D, Ferreira PJ. DNA sequences at a glance. Plos One. 8: e79922. PMID 24278218 DOI: 10.1371/journal.pone.0079922  0.396
2013 Bastos CA, Afreixo V, Garcia SP, Pinho AJ. Inter-STOP symbol distances for the identification of coding regions. Journal of Integrative Bioinformatics. 10: 230. PMID 24231144 DOI: 10.2390/biecoll-jib-2013-230  0.717
2013 Pinho AJ, Pratas D, Garcia SP. Compressing resequencing data with GReEn. Methods in Molecular Biology (Clifton, N.J.). 1038: 27-37. PMID 23872967 DOI: 10.1007/978-1-62703-514-9_2  0.321
2013 Afreixo V, Bastos CA, Garcia SP, Rodrigues JM, Pinho AJ, Ferreira PJ. The breakdown of the word symmetry in the human genome. Journal of Theoretical Biology. 335: 153-9. PMID 23831271 DOI: 10.1016/j.jtbi.2013.06.032  0.698
2013 de Matos LMO, Pratas D, Pinho AJ. A Compression Model for DNA Multiple Sequence Alignment Blocks Ieee Transactions On Information Theory. 59: 3189-3198. DOI: 10.1109/TIT.2012.2236605  0.35
2013 Bastos CAC, Afreixo V, Garcia SP, Pinho AJ. Segmentation of DNA into Coding and Noncoding Regions Based on Inter-STOP Symbols Distances Advances in Intelligent Systems and Computing. 222: 23-28. DOI: 10.1007/978-3-319-00578-2_4  0.679
2012 Pinho AJ, Pratas D, Garcia SP. GReEn: a tool for efficient compression of genome resequencing data. Nucleic Acids Research. 40: e27. PMID 22139935 DOI: 10.1093/nar/gkr1124  0.344
2012 Pratas D, Pinho AJ, Garcia SP. Exon: A web-based software toolkit for DNA sequence analysis Advances in Intelligent and Soft Computing. 154: 217-224. DOI: 10.1007/978-3-642-28839-5_25  0.301
2011 Garcia SP, Pinho AJ. Minimal absent words in four human genome assemblies. Plos One. 6: e29344. PMID 22220210 DOI: 10.1371/journal.pone.0029344  0.397
2011 Bastos CA, Afreixo V, Pinho AJ, Garcia SP, Rodrigues JM, Ferreira PJ. Inter-dinucleotide distances in the human genome: an analysis of the whole-genome and protein-coding distributions. Journal of Integrative Bioinformatics. 8: 172. PMID 21926435 DOI: 10.2390/biecoll-jib-2011-172  0.72
2011 Pinho AJ, Ferreira PJ, Neves AJ, Bastos CA. On the representability of complete genomes by multiple competing finite-context (Markov) models. Plos One. 6: e21588. PMID 21738720 DOI: 10.1371/journal.pone.0021588  0.716
2011 Garcia SP, Pinho AJ, Rodrigues JM, Bastos CA, Ferreira PJ. Minimal absent words in prokaryotic and eukaryotic genomes. Plos One. 6: e16065. PMID 21386877 DOI: 10.1371/journal.pone.0016065  0.654
2011 Afreixo V, Bastos CA, Pinho AJ, Garcia SP, Ferreira PJ. Genome analysis with distance to the nearest dissimilar nucleotide. Journal of Theoretical Biology. 275: 52-8. PMID 21295040 DOI: 10.1016/j.jtbi.2011.01.038  0.7
2011 Pinho AJ, Pratas D, Garcia SP. Complexity profiles of DNA sequences using finite-context models Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7058: 75-82. DOI: 10.1007/978-3-642-25364-5_8  0.306
2011 Bastos CAC, Afreixo V, Pinho AJ, Garcia SP, Rodrigues JMOS, Ferreira PJSG. Distances between dinucleotides in the human genome Advances in Intelligent and Soft Computing. 93: 205-211. DOI: 10.1007/978-3-642-19914-1_28  0.675
2010 Pinho AJ, Garcia SP, Ferreira PJSG, Afreixo V, Bastos CAC, Neves AJR, Rodrigues JMOS. Exploring homology using the concept of three-state entropy vector Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6282: 161-170. DOI: 10.1007/978-3-642-16001-1_14  0.65
2009 Afreixo V, Bastos CA, Pinho AJ, Garcia SP, Ferreira PJ. Genome analysis with inter-nucleotide distances. Bioinformatics (Oxford, England). 25: 3064-70. PMID 19759198 DOI: 10.1093/bioinformatics/btp546  0.689
2006 Pinho AJ, Neves AJ, Afreixo V, Bastos CA, Ferreira PJ. A three-state model for DNA protein-coding regions. Ieee Transactions On Bio-Medical Engineering. 53: 2148-55. PMID 17073319 DOI: 10.1109/TBME.2006.879477  0.671
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