Artemy Kolchinsky - Publications

Affiliations: 
School of Informatics Indiana University, Bloomington, Bloomington, IN, United States 

1/80 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Rossi A, Parada FJ, Kolchinsky A, Puce A. Neural correlates of apparent motion perception of impoverished facial stimuli: a comparison of ERP and ERSP activity. Neuroimage. 98: 442-59. PMID 24736174 DOI: 10.1016/J.Neuroimage.2014.04.029  0.483
Low-probability matches (unlikely to be authored by this person)
2018 Kolchinsky A, Wolpert DH. Semantic information, autonomous agency and non-equilibrium statistical physics. Interface Focus. 8: 20180041. PMID 30443338 DOI: 10.1098/Rsfs.2018.0041  0.294
2019 Owen JA, Kolchinsky A, Wolpert DH. Number of hidden states needed to physically implement a given conditional distribution New Journal of Physics. 21: 013022. DOI: 10.1088/1367-2630/Aaf81D  0.293
2015 Kolchinsky A, Gates AJ, Rocha LM. Modularity and the spread of perturbations in complex dynamical systems. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 92: 060801. PMID 26764620 DOI: 10.1103/Physreve.92.060801  0.29
2019 Avena-Koenigsberger A, Yan X, Kolchinsky A, van den Heuvel M, Hagmann P, Sporns O. A spectrum of routing strategies for brain networks. Plos Computational Biology. 15: e1006833. PMID 30849087 DOI: 10.1371/Journal.Pcbi.1006833  0.289
2020 Kolchinsky A, Corominas-Murtra B. Decomposing information into copying versus transformation. Journal of the Royal Society, Interface. 17: 20190623. PMID 31964273 DOI: 10.1098/Rsif.2019.0623  0.283
2017 Kolchinsky A, Wolpert DH. Dependence of dissipation on the initial distribution over states Journal of Statistical Mechanics: Theory and Experiment. 2017: 083202. DOI: 10.1088/1742-5468/Aa7Ee1  0.281
2014 Kolchinsky A, van den Heuvel MP, Griffa A, Hagmann P, Rocha LM, Sporns O, Goñi J. Multi-scale integration and predictability in resting state brain activity. Frontiers in Neuroinformatics. 8: 66. PMID 25104933 DOI: 10.3389/Fninf.2014.00066  0.281
2019 Kolchinsky A, Tracey BD, Wolpert DH. Nonlinear Information Bottleneck Entropy. 21: 1181. DOI: 10.3390/E21121181  0.275
2019 Wolpert DH, Kolchinsky A, Owen JA. Publisher Correction: A space-time tradeoff for implementing a function with master equation dynamics. Nature Communications. 10: 2072. PMID 31043614 DOI: 10.1038/S41467-019-10162-8  0.273
2019 Wolpert DH, Kolchinsky A, Owen JA. A space-time tradeoff for implementing a function with master equation dynamics. Nature Communications. 10: 1727. PMID 30988296 DOI: 10.1038/S41467-019-09542-X  0.271
2020 Owen JA, Kolchinsky A, Wolpert DH. Corrigendum: Number of hidden states needed to physically implement a given conditional distribution (2019 New Journal of Physics 21 013022) New Journal of Physics. 22: 019501. DOI: 10.1088/1367-2630/Ab60F8  0.268
2017 Kolchinsky A, Tracey B. Estimating Mixture Entropy with Pairwise Distances Entropy. 19: 361. DOI: 10.3390/E19070361  0.261
2010 Kolchinsky A, Abi-Haidar A, Kaur J, Hamed AA, Rocha LM. Classification of protein-protein interaction full-text documents using text and citation network features. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 7: 400-11. PMID 20671313 DOI: 10.1109/Tcbb.2010.55  0.237
2017 Kolchinsky A, Dhande N, Park K, Ahn YY. The Minor fall, the Major lift: inferring emotional valence of musical chords through lyrics. Royal Society Open Science. 4: 170952. PMID 29291089 DOI: 10.1098/Rsos.170952  0.237
2019 Berdahl A, Brelsford C, Bacco C, Dumas M, Ferdinand V, Grochow JA, Hébert-Dufresne L, Kallus Y, Kempes CP, Kolchinsky A, Larremore DB, Libby E, Power EA, Stern CA, Tracey BD. Dynamics of beneficial epidemics. Scientific Reports. 9: 15093. PMID 31641147 DOI: 10.1038/S41598-019-50039-W  0.237
2015 Kolchinsky A, Lourenço A, Wu HY, Li L, Rocha LM. Extraction of pharmacokinetic evidence of drug-drug interactions from the literature. Plos One. 10: e0122199. PMID 25961290 DOI: 10.1371/Journal.Pone.0122199  0.234
2020 Wolpert DH, Kolchinsky A. Thermodynamics of computing with circuits New Journal of Physics. 22: 063047. DOI: 10.1088/1367-2630/Ab82B8  0.231
2019 Saxe AM, Bansal Y, Dapello J, Advani M, Kolchinsky A, Tracey BD, Cox DD. On the information bottleneck theory of deep learning Journal of Statistical Mechanics: Theory and Experiment. 2019: 124020. DOI: 10.1088/1742-5468/Ab3985  0.208
2019 Hobson EA, Ferdinand V, Kolchinsky A, Garland J. Rethinking animal social complexity measures with the help of complex systems concepts Animal Behaviour. 155: 287-296. DOI: 10.1016/J.Anbehav.2019.05.016  0.208
2017 Kolchinsky A, Tracey B. Correction: Kolchinsky, A. and Tracey, B.D. Estimating Mixture Entropy with Pairwise Distances. Entropy 2017, 19, 361 Entropy. 19: 588. DOI: 10.3390/E19110588  0.199
2022 Kolchinsky A. A Novel Approach to the Partial Information Decomposition. Entropy (Basel, Switzerland). 24. PMID 35327914 DOI: 10.3390/e24030403  0.161
2023 Ohga N, Ito S, Kolchinsky A. Thermodynamic Bound on the Asymmetry of Cross-Correlations. Physical Review Letters. 131: 077101. PMID 37656850 DOI: 10.1103/PhysRevLett.131.077101  0.155
2021 Kolchinsky A, Wolpert DH. Dependence of integrated, instantaneous, and fluctuating entropy production on the initial state in quantum and classical processes. Physical Review. E. 104: 054107. PMID 34942730 DOI: 10.1103/PhysRevE.104.054107  0.139
2023 Kolchinsky A. Generalized Zurek's bound on the cost of an individual classical or quantum computation. Physical Review. E. 108: 034101. PMID 37849139 DOI: 10.1103/PhysRevE.108.034101  0.127
2021 Kolchinsky A, Wolpert DH. Entropy production given constraints on the energy functions. Physical Review. E. 104: 034129. PMID 34654169 DOI: 10.1103/PhysRevE.104.034129  0.127
2003 Kolchinsky A, Fowler G, Meersman F. Dumbocracy [1] Scientist. 17: 11.  0.12
2002 Mirzabekov A, Kolchinsky A. Emerging array-based technologies in proteomics. Current Opinion in Chemical Biology. 6: 70-5. PMID 11827826 DOI: 10.1016/S1367-5931(01)00286-1  0.106
1993 Funke RP, Kolchinsky A, Gresshoff PM. Physical mapping of a region in the soybean (Glycine max) genome containing duplicated sequences. Plant Molecular Biology. 22: 437-46. PMID 8329683 DOI: 10.1007/BF00015974  0.104
2022 Sheldon FC, Kolchinsky A, Caravelli F. Computational capacity of LRC, memristive, and hybrid reservoirs. Physical Review. E. 106: 045310. PMID 36397581 DOI: 10.1103/PhysRevE.106.045310  0.103
2004 Kolchinsky AM, Gryadunov DA, Lysov YP, Mikhailovich VM, Nasedkina TV, Turygin AY, Rubina AY, Barsky VE, Zasedatelev AS. Gel-based microchips: History and prospects Molekulyarnaya Biologiya. 38: 5-16. PMID 15042831 DOI: 10.1023/B:MBIL.0000015134.67385.fd  0.092
2011 Gryadunov D, Dementieva E, Mikhailovich V, Nasedkina T, Rubina A, Savvateeva E, Fesenko E, Chudinov A, Zimenkov D, Kolchinsky A, Zasedatelev A. Gel-based microarrays in clinical diagnostics in Russia. Expert Review of Molecular Diagnostics. 11: 839-53. PMID 22022946 DOI: 10.1586/erm.11.73  0.092
2002 Kolchinsky A, Mirzabekov A. Analysis of SNPs and other genomic variations using gel-based chips. Human Mutation. 19: 343-60. PMID 11933189 DOI: 10.1002/humu.10077  0.09
1996 Kolchinsky A. Flies with many eyes: first master gene found. Surgical Neurology. 45: 68-70. PMID 9190702 DOI: 10.1016/0090-3019(95)00301-0  0.079
1995 Kolchinsky A, Gresshoff PM. A major satellite DNA of soybean is a 92-base pairs tandem repeat. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 90: 621-6. PMID 24174019 DOI: 10.1007/BF00222125  0.079
1984 Kolchinsky AM, Vashakidze RP, Preobrazhenskaya OV. The structure of ribosomal chromatin of Drosophila melanogaster embryos: Random location of nucleosomes on DNA and specific organization of non-transcribed spacer Molekulyarnaya Biologiya. 18: 1141-1150. PMID 6095027  0.073
2002 Zasedateleva OA, Krylov AS, Prokopenko DV, Skabkin MA, Ovchinnikov LP, Kolchinsky A, Mirzabekov AD. Specificity of mammalian Y-box binding protein p50 in interaction with ss and ds DNA analyzed with generic oligonucleotide microchip. Journal of Molecular Biology. 324: 73-87. PMID 12421560 DOI: 10.1016/S0022-2836(02)00937-3  0.072
1980 Melnikova AF, Kolchinsky AM, Golovanov EI, Mirzabekov AD. The length of nucleosomal DNA repeat in whole cells, fixed by freezing in the presence of formaldehyde Molekulyarnaya Biologiya. 14: 549-557. PMID 7402200  0.069
1982 Kolchinsky AM, Vashakidze RP, Evgenev MB, Mirzabekov AD. Cloning and study on Drosophila melanogaster ribosomal insertions Molekulyarnaya Biologiya. 16: 302-314. PMID 6280035  0.067
1993 Kolchinsky A, Gresshoff PM. Direct end labelling of telomeres. Genome / National Research Council Canada = Gã©Nome / Conseil National De Recherches Canada. 36: 224-9. PMID 8514152  0.067
1997 Kolchinsky A, Landau-Ellis D, Gresshoff PM. Map order and linkage distances of molecular markers close to the supernodulation (nts-1) locus of soybean. Molecular & General Genetics : Mgg. 254: 29-36. PMID 9108287 DOI: 10.1007/s004380050387  0.066
2008 Rubina AY, Kolchinsky A, Makarov AA, Zasedatelev AS. Why 3-D? Gel-based microarrays in proteomics. Proteomics. 8: 817-31. PMID 18214844 DOI: 10.1002/pmic.200700629  0.063
1980 Kolchinsky AM, Vashakidze RP, Mirzabekov AD. A simple method of cloning eukaryotic DNA: ribosomal genes from Drosophila containing new insertions in the 26S gene Molekulyarnaya Biologiya. 14: 1098-1109. PMID 6252449  0.061
1979 Zavriev SK, Minchenkova LE, Vorlícková M, Kolchinsky AM, Volkenstein MV, Ivanov VI. Circular dichroism anisotrophy of DNA with different modifications at N7 of guanine. Biochimica Et Biophysica Acta. 564: 212-24. PMID 385054 DOI: 10.1016/0005-2787(79)90220-X  0.06
1990 Kolchinsky A, Kanazin V, Yakovleva E, Gazumyan A, Kole C, Ananiev E. 5S-RNA genes of barley are located on the second chromosome. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 80: 333-6. PMID 24220965 DOI: 10.1007/BF00210068  0.058
1986 Kolchinsky AM, Vashakidze RP, Kupert EYu, Korochkin LI. Uneven distribution of cloned transcribed DNA sequences in polytene chromosomes of Drosophila melanogaster. Cell Differentiation. 18: 145-9. PMID 2420474 DOI: 10.1016/0045-6039(86)90009-6  0.058
1993 Kolchinsky AM, Funke RP, Gresshoff PM. DAF-amplified fragments can be used as markers for DNA from pulse field gels. Biotechniques. 14: 400-3. PMID 8457344  0.057
1975 Kolchinsky AM, Mirzabekov AD, Zasedatelev AS. Structure of complexes of distamycin type antibiotics and dactinomycin with DNA: new data on localization of these antibiotics within the narrow groove of DNA (Russian) Molekulyarnaya Biologiya. 9: 19-27.  0.056
1991 Kolchinsky A, Kolesnikova M, Ananiev E. "Portraying" of plant genomes using polymerase chain reaction amplification of ribosomal 5S genes. Genome / National Research Council Canada = Gã©Nome / Conseil National De Recherches Canada. 34: 1028-31. PMID 1778467  0.056
2013 Kolchinsky A, Lourenço A, Li L, Rocha LM. Evaluation of linear classifiers on articles containing pharmacokinetic evidence of drug-drug interactions. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 409-20. PMID 23424145  0.054
2008 Makarov AA, Kolchinsky A, Ilinskaya ON. Binase and other microbial RNases as potential anticancer agents. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 30: 781-90. PMID 18623073 DOI: 10.1002/bies.20789  0.051
1988 Vashakidze RP, Mamulashvili NA, Kalandarishvili KG, Kolchinsky AM. Strand-specific transcription of the simple sequences poly[dG-dT):(dC-dA)] and poly[(dG-dA):(dC-dT)] in D. melanogaster embryos revealed by S1 nuclease treatment. Febs Letters. 232: 235-7. PMID 2452756 DOI: 10.1016/0014-5793(88)80423-X  0.047
2008 Mikhailovich V, Gryadunov D, Kolchinsky A, Makarov AA, Zasedatelev A. DNA microarrays in the clinic: infectious diseases. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 30: 673-82. PMID 18536036 DOI: 10.1002/bies.20781  0.045
2001 Kolchinsky A. Neurosurgical intervention for Parkinson's disease: an update. Surgical Neurology. 56: 277-81. PMID 11780175 DOI: 10.1016/S0090-3019(01)00578-X  0.045
2008 Kazantsev AG, Kolchinsky AM. Central role of alpha-synuclein oligomers in neurodegeneration in Parkinson disease. Archives of Neurology. 65: 1577-81. PMID 19064744 DOI: 10.1001/archneur.65.12.1577  0.044
1975 Melnikova AF, Zasedatelev AS, Kolchinsky AM, Gursky GV, Zhuze AL, Grochovsky SL, Mirzabekov AD. Accessibility of the minor groove of DNA in chromatin to the binding of antibiotics netropsin and distamycin A. Molecular Biology Reports. 2: 135-42. PMID 1172183 DOI: 10.1007/BF00357544  0.044
1976 Kolchinsky AM, Mirzabekov AD, Gilbert W, Li L. Preferential protection of the minor groove of non-operator DNA by lac repressor against methylation by dimethyl sulphate. Nucleic Acids Research. 3: 11-8. PMID 1250692 DOI: 10.1093/Nar/3.1.11  0.044
1978 Kolchinsky AM, Sanko DF, Shik VV. The state of DNA grooves in mono and oligonucleosomes and complexes of DNA with histone fractions Molekulyarnaya Biologiya. 12: 365-371. PMID 349361  0.039
1994 Funke RP, Kolchinsky A, Gresshoff PM. High EDTA concentrations cause entrapment of small DNA molecules in the compression zone of pulsed field gels, resulting in smaller than expected insert sizes in YACs prepared from size selected DNA. Nucleic Acids Research. 22: 2708-9. PMID 8041635  0.039
1974 Mirzabekov AD, Kolchinsky AM. Localization of some molecules within the grooves of DNA by modification of their complexes with dimethyl sulphate. Molecular Biology Reports. 1: 385-90. PMID 4472898 DOI: 10.1007/BF00385670  0.037
2007 Preobrazhenskaya OV, Karpov VL, Kolchinsky AM. The legacy of A.D. Mirzabekov and his laboratory in studies of the chromatin structure via DNA-protein crosslinking Molecular Biology. 41: 695-701. DOI: 10.1134/S0026893307050032  0.037
1985 Kolchinsky AM, Vashakidze RP, Ananiev EV. The genes of Drosophila melanogaster, coding for abundant polyadenylated RNAs: Their cloning, localization and expression Molekulyarnaya Biologiya. 19: 1569-1578.  0.036
1989 Vashakidze RP, Mamulashvili NA, Kalandarishvili KG, Kolchinsky AM. Strand-specific transcription of the simple sequences poly[(dG-dT)·(dC-dA)] and poly[(dG-dA)·(dC-dT)] in Drosophila melanogaster embryos revealed by S1 nuclease treatment Molekulyarnaya Biologiya. 23: 315-319.  0.035
2015 Kolchinsky A, Lourenço A, Wu HY, Li L, Rocha LM. Extraction of pharmacokinetic evidence of drug-drug interactions from the literature Plos One. 10. DOI: 10.1371/journal.pone.0122199  0.034
1997 Kolchinsky A, Roninson IB. Drug resistance conferred by MDR1 expression in spheroids formed by glioblastoma cell lines. Anticancer Research. 17: 3321-7. PMID 9413166  0.034
2000 Kolchinsky A. Evaded bioethics. Surgical Neurology. 54: 199. PMID 11203374  0.033
1998 Kolchinsky A. Conditionally tumorigenic clone of C6 cells is induced by gamma-irradiation. Anticancer Research. 18: 1799-804. PMID 9673407  0.032
1998 Hallahan DE, Staba-Hogan MJ, Virudachalam S, Kolchinsky A. X-ray-induced P-selectin localization to the lumen of tumor blood vessels. Cancer Research. 58: 5216-20. PMID 9823335  0.032
1991 Silchenko SS, Kolchinsky AG. Synthesis and immobilization on the disperse silica surface of functionalized macrocyclic nickel complexes Ukrainskii Khimicheskii Zhurnal. 57: 1038-1042.  0.032
1999 Kolchinsky A. First gene involved in glioblastoma progression identified. Surgical Neurology. 52: 19-20. PMID 10390165 DOI: 10.1016/S0090-3019(97)00474-6  0.031
1999 Kolchinsky A. Search for Alzheimer's disease genes yields new candidates. Surgical Neurology. 52: 21. PMID 10390166 DOI: 10.1016/S0090-3019(98)00032-9  0.031
2020 Kolchinsky A, Wolpert DH. Thermodynamic costs of Turing machines Physical Review Research. 2. DOI: 10.1103/PhysRevResearch.2.033312  0.03
1977 Mirzabekov AD, San'ko DF, Kolchinsky AM, Melnikova AF. Protein arrangement in the DNA grooves in chromatin and nucleoprotamine in vitro and in vivo revealed by methylation. European Journal of Biochemistry / Febs. 75: 379-89. PMID 885136  0.028
2002 Barsky VE, Kolchinsky AM, Lysov YP, Mirzabekov AD. Biological microchips with hydrogel-immobilized nucleic acids, proteins, and other compounds: Properties and applications in genomics Molecular Biology. 36: 437-455. DOI: 10.1023/A:1019804005711  0.025
1992 Kolchinsky A, Gresshoff PM. Nucleotide sequence of the 5S rRNA gene from Glycine soja. Plant Molecular Biology. 19: 1045-7. PMID 1511128 DOI: 10.1007/BF00040535  0.018
2007 Kolchinsky AM, Barsky VE, Zasedatalev AS. Microchips in the laboratory of A.D. Mirzabekov: 1988-2007 Molecular Biology. 41: 687-694. DOI: 10.1134/S0026893307050020  0.017
1999 Kolchinsky A. Genetics of stroke in rats. Surgical Neurology. 52: 17-8. PMID 10390164 DOI: 10.1016/S0090-3019(97)00486-2  0.01
1996 Kolchinsky A. What a wrong fold can do: transmissible spongiform encephalopathies. Surgical Neurology. 46: 587-90. PMID 8956894 DOI: 10.1016/S0090-3019(96)00269-8  0.01
1996 Kolchinsky A. One step closer to gene therapy for Parkinson's disease. Surgical Neurology. 45: 211-2. PMID 8638215 DOI: 10.1016/0090-3019(95)00400-9  0.01
1994 Kolchinsky A, Funke R, Gresshoff PM. Dissecting molecular mechanisms of nodulation: taking a leaf from Arabidopsis. Plant Molecular Biology. 26: 549-52. PMID 7948910  0.01
Hide low-probability matches.