| Year |
Citation |
Score |
| 2019 |
Kaur P, Rausch M, Malakar B, Watson U, Damle NP, Chawla Y, Srinivasan S, Sharma K, Schneider T, Jhingan GD, Saini D, Mohanty D, Grein F, Nandicoori VK. LipidII interaction with specific residues of Mycobacterium tuberculosis PknB extracytoplasmic domain governs its optimal activation. Nature Communications. 10: 1231. PMID 30874556 DOI: 10.1038/S41467-019-09223-9 |
0.378 |
|
| 2017 |
Agrawal P, Khater S, Gupta M, Sain N, Mohanty D. RiPPMiner: a bioinformatics resource for deciphering chemical structures of RiPPs based on prediction of cleavage and cross-links. Nucleic Acids Research. PMID 28499008 DOI: 10.1093/Nar/Gkx408 |
0.433 |
|
| 2017 |
Khater S, Gupta M, Agrawal P, Sain N, Prava J, Gupta P, Grover M, Kumar N, Mohanty D. SBSPKSv2: structure-based sequence analysis of polyketide synthases and non-ribosomal peptide synthetases. Nucleic Acids Research. PMID 28460065 DOI: 10.1093/Nar/Gkx344 |
0.491 |
|
| 2017 |
Sharma C, Mohanty D. Molecular dynamics simulations for deciphering structural basis of recognition of pre-let-7 miRNAs by LIN28. Biochemistry. PMID 28076679 DOI: 10.1021/Acs.Biochem.6B00837 |
0.369 |
|
| 2016 |
Khater S, Anand S, Mohanty D. methods for linking genes and secondary metabolites: The way forward. Synthetic and Systems Biotechnology. 1: 80-88. PMID 29062931 DOI: 10.1016/J.Synbio.2016.03.001 |
0.381 |
|
| 2016 |
Sharma C, Mohanty D. Sequence and structure based analysis of proteins involved in miRNA biogenesis. Journal of Biomolecular Structure & Dynamics. 1-39. PMID 27928938 DOI: 10.1080/07391102.2016.1269687 |
0.443 |
|
| 2016 |
Sain N, Mohanty D. modPDZpep: a web resource for structure based analysis of human PDZ-mediated interaction networks. Biology Direct. 11: 48. PMID 27655048 DOI: 10.1186/S13062-016-0151-4 |
0.433 |
|
| 2016 |
Sain N, Tiwari G, Mohanty D. Understanding the molecular basis of substrate binding specificity of PTB domains. Scientific Reports. 6: 31418. PMID 27526776 DOI: 10.1038/Srep31418 |
0.482 |
|
| 2015 |
Khater S, Mohanty D. Deciphering the Molecular Basis of Functional Divergence in AMPylating Enzymes by Molecular Dynamics Simulations and Structure Guided Phylogeny. Biochemistry. 54: 5209-24. PMID 26249842 DOI: 10.1021/Acs.Biochem.5B00351 |
0.515 |
|
| 2015 |
Khater S, Mohanty D. In silico identification of AMPylating enzymes and study of their divergent evolution. Scientific Reports. 5: 10804. PMID 26039278 DOI: 10.1038/Srep10804 |
0.451 |
|
| 2015 |
Khater S, Mohanty D. novPTMenzy: a database for enzymes involved in novel post-translational modifications. Database : the Journal of Biological Databases and Curation. 2015: bav039. PMID 25931459 DOI: 10.1093/Database/Bav039 |
0.442 |
|
| 2014 |
Khater S, Mohanty D. Genome-wide search for eliminylating domains reveals novel function for BLES03-like proteins Genome Biology and Evolution. 6: 2017-2033. PMID 25062915 DOI: 10.1093/Gbe/Evu161 |
0.51 |
|
| 2014 |
Damle NP, Mohanty D. Mechanism of autophosphorylation of mycobacterial PknB explored by molecular dynamics simulations Biochemistry. 53: 4715-4726. PMID 24988180 DOI: 10.1021/Bi500245V |
0.367 |
|
| 2014 |
Tiwari G, Mohanty D. Structure-based multiscale approach for identification of interaction partners of PDZ domains Journal of Chemical Information and Modeling. 54: 1143-1156. PMID 24593775 DOI: 10.1021/Ci400627Y |
0.421 |
|
| 2014 |
Damle NP, Mohanty D. Deciphering kinase-substrate relationships by analysis of domain-specific phosphorylation network Bioinformatics. 30: 1730-1738. PMID 24574117 DOI: 10.1093/Bioinformatics/Btu112 |
0.324 |
|
| 2013 |
Tiwari G, Mohanty D. An In Silico Analysis of the Binding Modes and Binding Affinities of Small Molecule Modulators of PDZ-Peptide Interactions Plos One. 8. PMID 23951139 DOI: 10.1371/Journal.Pone.0071340 |
0.366 |
|
| 2013 |
Yadav G, Anand S, Mohanty D. Prediction of inter domain interactions in modular polyketide synthases by docking and correlated mutation analysis. Journal of Biomolecular Structure & Dynamics. 31: 17-29. PMID 22803697 DOI: 10.1080/07391102.2012.691342 |
0.724 |
|
| 2012 |
Vats A, Singh AK, Mukherjee R, Chopra T, Ravindran MS, Mohanty D, Chatterji D, Reyrat JM, Gokhale RS. Retrobiosynthetic approach delineates the biosynthetic pathway and the structure of the acyl chain of mycobacterial glycopeptidolipids. The Journal of Biological Chemistry. 287: 30677-87. PMID 22798073 DOI: 10.1074/Jbc.M112.384966 |
0.356 |
|
| 2012 |
Anand S, Mohanty D. Modeling holo-ACP:DH and holo-ACP:KR complexes of modular polyketide synthases: a docking and molecular dynamics study. Bmc Structural Biology. 12: 10. PMID 22639887 DOI: 10.1186/1472-6807-12-10 |
0.467 |
|
| 2012 |
Ahmed A, Gaadhe K, Sharma GP, Kumar N, Neculai M, Hui R, Mohanty D, Sharma P. Novel insights into the regulation of malarial calcium-dependent protein kinase 1. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 26: 3212-21. PMID 22539638 DOI: 10.1096/Fj.12-203877 |
0.351 |
|
| 2012 |
Kaushik S, Mohanty D, Surolia A. Molecular dynamics simulations on pars intercerebralis major peptide-C (PMP-C) reveal the role of glycosylation and disulfide bonds in its enhanced structural stability and function. Journal of Biomolecular Structure & Dynamics. 29: 905-20. PMID 22292951 DOI: 10.1080/073911012010525026 |
0.331 |
|
| 2012 |
Anand S, Mohanty D. Inter-domain movements in polyketide synthases: a molecular dynamics study. Molecular Biosystems. 8: 1157-71. PMID 22282160 DOI: 10.1039/C2Mb05425F |
0.467 |
|
| 2011 |
Nair DR, Ghosh R, Manocha A, Mohanty D, Saran S, Gokhale RS. Two functionally distinctive phosphopantetheinyl transferases from amoeba Dictyostelium discoideum. Plos One. 6: e24262. PMID 21931666 DOI: 10.1371/Journal.Pone.0024262 |
0.399 |
|
| 2011 |
Mohanty D, Sankaranarayanan R, Gokhale RS. Fatty acyl-AMP ligases and polyketide synthases are unique enzymes of lipid biosynthetic machinery in Mycobacterium tuberculosis. Tuberculosis (Edinburgh, Scotland). 91: 448-55. PMID 21601529 DOI: 10.1016/J.Tube.2011.04.006 |
0.38 |
|
| 2011 |
Kaushik S, Mohanty D, Surolia A. Role of glycosylation in structure and stability of Erythrina corallodendron lectin (EcorL): a molecular dynamics study. Protein Science : a Publication of the Protein Society. 20: 465-81. PMID 21432931 DOI: 10.1002/Pro.578 |
0.413 |
|
| 2010 |
Kumar N, Mohanty D. Structure-based identification of MHC binding peptides: Benchmarking of prediction accuracy. Molecular Biosystems. 6: 2508-20. PMID 20953500 DOI: 10.1039/C0Mb00013B |
0.312 |
|
| 2010 |
Kaur S, Modi P, Srivastava V, Mudgal R, Tikoo S, Arora P, Mohanty D, Sengupta S. Chk1-dependent constitutive phosphorylation of BLM helicase at serine 646 decreases after DNA damage. Molecular Cancer Research : McR. 8: 1234-47. PMID 20719863 DOI: 10.1158/1541-7786.Mcr-10-0233 |
0.315 |
|
| 2010 |
Anand S, Prasad MV, Yadav G, Kumar N, Shehara J, Ansari MZ, Mohanty D. SBSPKS: structure based sequence analysis of polyketide synthases. Nucleic Acids Research. 38: W487-96. PMID 20444870 DOI: 10.1093/Nar/Gkq340 |
0.752 |
|
| 2010 |
Khurana P, Gokhale RS, Mohanty D. Genome scale prediction of substrate specificity for acyl adenylate superfamily of enzymes based on active site residue profiles. Bmc Bioinformatics. 11: 57. PMID 20105319 DOI: 10.1186/1471-2105-11-57 |
0.435 |
|
| 2010 |
Kumar N, Mohanty D. Identification of substrates for Ser/Thr kinases using residue-based statistical pair potentials. Bioinformatics (Oxford, England). 26: 189-97. PMID 19910306 DOI: 10.1093/Bioinformatics/Btp633 |
0.342 |
|
| 2009 |
Sharma D, Mohanty D, Surolia A. RegAnalyst: a web interface for the analysis of regulatory motifs, networks and pathways. Nucleic Acids Research. 37: W193-201. PMID 19465400 DOI: 10.1093/Nar/Gkp388 |
0.343 |
|
| 2009 |
Yadav G, Gokhale RS, Mohanty D. Towards prediction of metabolic products of polyketide synthases: an in silico analysis. Plos Computational Biology. 5: e1000351. PMID 19360130 DOI: 10.1371/Journal.Pcbi.1000351 |
0.721 |
|
| 2009 |
Arora P, Goyal A, Natarajan VT, Rajakumara E, Verma P, Gupta R, Yousuf M, Trivedi OA, Mohanty D, Tyagi A, Sankaranarayanan R, Gokhale RS. Mechanistic and functional insights into fatty acid activation in Mycobacterium tuberculosis. Nature Chemical Biology. 5: 166-73. PMID 19182784 DOI: 10.1038/Nchembio.143 |
0.34 |
|
| 2009 |
Kaushik S, Mohanty D, Surolia A. The role of metal ions in substrate recognition and stability of concanavalin A: a molecular dynamics study. Biophysical Journal. 96: 21-34. PMID 18849415 DOI: 10.1529/Biophysj.108.134601 |
0.316 |
|
| 2008 |
Ansari MZ, Sharma J, Gokhale RS, Mohanty D. In silico analysis of methyltransferase domains involved in biosynthesis of secondary metabolites. Bmc Bioinformatics. 9: 454. PMID 18950525 DOI: 10.1186/1471-2105-9-454 |
0.43 |
|
| 2008 |
Chopra T, Banerjee S, Gupta S, Yadav G, Anand S, Surolia A, Roy RP, Mohanty D, Gokhale RS. Novel intermolecular iterative mechanism for biosynthesis of mycoketide catalyzed by a bimodular polyketide synthase. Plos Biology. 6: e163. PMID 18613748 DOI: 10.1371/Journal.Pbio.0060163 |
0.719 |
|
| 2008 |
Ghosh R, Chhabra A, Phatale PA, Samrat SK, Sharma J, Gosain A, Mohanty D, Saran S, Gokhale RS. Dissecting the functional role of polyketide synthases in Dictyostelium discoideum: biosynthesis of the differentiation regulating factor 4-methyl-5-pentylbenzene-1,3-diol. The Journal of Biological Chemistry. 283: 11348-54. PMID 18252726 DOI: 10.1074/Jbc.M709588200 |
0.45 |
|
| 2007 |
Gokhale RS, Sankaranarayanan R, Mohanty D. Versatility of polyketide synthases in generating metabolic diversity Current Opinion in Structural Biology. 17: 736-743. PMID 17935970 DOI: 10.1016/J.Sbi.2007.08.021 |
0.425 |
|
| 2007 |
Kumar N, Mohanty D. MODPROPEP: a program for knowledge-based modeling of protein-peptide complexes. Nucleic Acids Research. 35: W549-55. PMID 17478500 DOI: 10.1093/Nar/Gkm266 |
0.394 |
|
| 2007 |
Gokhale RS, Saxena P, Chopra T, Mohanty D. Versatile polyketide enzymatic machinery for the biosynthesis of complex mycobacterial lipids. Natural Product Reports. 24: 267-77. PMID 17389997 DOI: 10.1039/B616817P |
0.332 |
|
| 2006 |
Krithika R, Marathe U, Saxena P, Ansari MZ, Mohanty D, Gokhale RS. A genetic locus required for iron acquisition in Mycobacterium tuberculosis. Proceedings of the National Academy of Sciences of the United States of America. 103: 2069-74. PMID 16461464 DOI: 10.1073/Pnas.0507924103 |
0.357 |
|
| 2005 |
Arora P, Vats A, Saxena P, Mohanty D, Gokhale RS. Promiscuous fatty acyl CoA ligases produce acyl-CoA and acyl-SNAC precursors for polyketide biosynthesis. Journal of the American Chemical Society. 127: 9388-9. PMID 15984864 DOI: 10.1021/Ja052991S |
0.441 |
|
| 2005 |
Kamra P, Gokhale RS, Mohanty D. SEARCHGTr: a program for analysis of glycosyltransferases involved in glycosylation of secondary metabolites. Nucleic Acids Research. 33: W220-5. PMID 15980457 DOI: 10.1093/Nar/Gki449 |
0.479 |
|
| 2005 |
Trivedi OA, Arora P, Vats A, Ansari MZ, Tickoo R, Sridharan V, Mohanty D, Gokhale RS. Dissecting the mechanism and assembly of a complex virulence mycobacterial lipid. Molecular Cell. 17: 631-43. PMID 15749014 DOI: 10.1016/J.Molcel.2005.02.009 |
0.384 |
|
| 2004 |
Ansari MZ, Yadav G, Gokhale RS, Mohanty D. NRPS-PKS: a knowledge-based resource for analysis of NRPS/PKS megasynthases. Nucleic Acids Research. 32: W405-13. PMID 15215420 DOI: 10.1093/Nar/Gkh359 |
0.734 |
|
| 2004 |
Trivedi OA, Arora P, Sridharan V, Tickoo R, Mohanty D, Gokhale RS. Enzymic activation and transfer of fatty acids as acyl-adenylates in mycobacteria. Nature. 428: 441-5. PMID 15042094 DOI: 10.1038/Nature02384 |
0.345 |
|
| 2003 |
Saxena P, Yadav G, Mohanty D, Gokhale RS. A new family of type III polyketide synthases in Mycobacterium tuberculosis. The Journal of Biological Chemistry. 278: 44780-90. PMID 12941968 DOI: 10.1074/Jbc.M306714200 |
0.69 |
|
| 2003 |
Yadav G, Gokhale RS, Mohanty D. SEARCHPKS: A program for detection and analysis of polyketide synthase domains. Nucleic Acids Research. 31: 3654-8. PMID 12824387 DOI: 10.1093/Nar/Gkg607 |
0.72 |
|
| 2003 |
Yadav G, Gokhale RS, Mohanty D. Computational approach for prediction of domain organization and substrate specificity of modular polyketide synthases. Journal of Molecular Biology. 328: 335-63. PMID 12691745 DOI: 10.1016/S0022-2836(03)00232-8 |
0.74 |
|
| 2000 |
Mohanty D, Elber R, Thirumalai D. Probing the role of local propensity in peptide turn formation International Journal of Quantum Chemistry. 80: 1125-1128. DOI: 10.1002/1097-461X(2000)80:4/5<1125::Aid-Qua62>3.0.Co;2-J |
0.337 |
|
| 1999 |
Mohanty D, Kolinski A, Skolnick J. De novo simulations of the folding thermodynamics of the GCN4 leucine zipper Biophysical Journal. 77: 54-69. PMID 10388740 DOI: 10.1016/S0006-3495(99)76872-4 |
0.318 |
|
| 1999 |
Mohanty D, Dominy BN, Kolinski A, Brooks CL, Skolnick J. Correlation between knowledge-based and detailed atomic potentials: Application to the unfolding of the GCN4 leucine zipper Proteins: Structure, Function and Genetics. 35: 447-452. PMID 10382672 DOI: 10.1002/(Sici)1097-0134(19990601)35:4<447::Aid-Prot8>3.0.Co;2-O |
0.33 |
|
| 1999 |
Skolnick J, Kolinski A, Mohanty D. De novo predictions of the quaternary structure of leucine zippers and other coiled coils International Journal of Quantum Chemistry. 75: 165-176. DOI: 10.1002/(Sici)1097-461X(1999)75:3<165::Aid-Qua6>3.0.Co;2-Q |
0.383 |
|
| 1997 |
Mohanty D, Elber R, Thirumalai D, Beglov D, Roux B. Kinetics of peptide folding: computer simulations of SYPFDV and peptide variants in water. Journal of Molecular Biology. 272: 423-42. PMID 9325101 DOI: 10.1006/Jmbi.1997.1246 |
0.358 |
|
| 1995 |
Mohanty D, Bansal M. Chain folding and A:T pairing in human telomeric DNA: A model-building and molecular dynamics study Biophysical Journal. 69: 1046-1067. PMID 8519959 DOI: 10.1016/S0006-3495(95)79979-9 |
0.512 |
|
| 1994 |
Mohanty D, Bansal M. Conformational polymorphism in telomeric structures: Loop orientation and interloop pairing in d(G4TnG4) Biopolymers. 34: 1187-1211. PMID 7948732 DOI: 10.1002/Bip.360340908 |
0.536 |
|
| 1993 |
Mohanty D, Bansal M. Conformational polymorphism in G-tetraplex structures: Strand reversal by base flipover or sugar flipover Nucleic Acids Research. 21: 1767-1774. PMID 8493095 DOI: 10.1093/Nar/21.8.1767 |
0.552 |
|
| 1992 |
Balagurumoorthy P, Brahmachari SK, Mohanty D, Bansal M, Sasisekharan V. Hairpin and parallel quartet structures for telomeric sequences Nucleic Acids Research. 20: 4061-4067. PMID 1508691 DOI: 10.1093/Nar/20.15.4061 |
0.519 |
|
| 1991 |
Mohanty D, Bansal M. Dna polymorphism and local variation in base-pair orientation: A theoretical rationale Journal of Biomolecular Structure and Dynamics. 9: 127-142. PMID 1781943 DOI: 10.1080/07391102.1991.10507898 |
0.475 |
|
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