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David Kamanda Ngugi - Publications

Affiliations: 
2008 Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Braunschweig, Germany 
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41/47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Protasov E, Nonoh JO, Kästle Silva JM, Mies US, Hervé V, Dietrich C, Lang K, Mikulski L, Platt K, Poehlein A, Köhler-Ramm T, Miambi E, Boga HI, Feldewert C, Ngugi DK, et al. Diversity and taxonomic revision of methanogens and other archaea in the intestinal tract of terrestrial arthropods. Frontiers in Microbiology. 14: 1281628. PMID 38033561 DOI: 10.3389/fmicb.2023.1281628  0.764
2023 Diao M, Dyksma S, Koeksoy E, Ngugi DK, Anantharaman K, Loy A, Pester M. Global diversity and inferred ecophysiology of microorganisms with the potential for dissimilatory sulfate/sulfite reduction. Fems Microbiology Reviews. 47. PMID 37796897 DOI: 10.1093/femsre/fuad058  0.703
2023 Ngugi DK, Acinas SG, Sánchez P, Gasol JM, Agusti S, Karl DM, Duarte CM. Abiotic selection of microbial genome size in the global ocean. Nature Communications. 14: 1384. PMID 36914646 DOI: 10.1038/s41467-023-36988-x  0.376
2023 Ngugi DK, Salcher MM, Andrei AS, Ghai R, Klotz F, Chiriac MC, Ionescu D, Büsing P, Grossart HP, Xing P, Priscu JC, Alymkulov S, Pester M. Postglacial adaptations enabled colonization and quasi-clonal dispersal of ammonia-oxidizing archaea in modern European large lakes. Science Advances. 9: eadc9392. PMID 36724220 DOI: 10.1126/sciadv.adc9392  0.713
2022 Ansari MI, Calleja ML, Silva L, Viegas M, Ngugi DK, Huete-Stauffer TM, Morán XAG. High-Frequency Variability of Bacterioplankton in Response to Environmental Drivers in Red Sea Coastal Waters. Frontiers in Microbiology. 13: 780530. PMID 35432231 DOI: 10.3389/fmicb.2022.780530  0.326
2022 Klotz F, Kitzinger K, Ngugi DK, Büsing P, Littmann S, Kuypers MMM, Schink B, Pester M. Quantification of archaea-driven freshwater nitrification from single cell to ecosystem levels. The Isme Journal. PMID 35260828 DOI: 10.1038/s41396-022-01216-9  0.715
2021 Michoud G, Ngugi DK, Barozzi A, Merlino G, Calleja ML, Delgado-Huertas A, Morán XAG, Daffonchio D. Fine-scale metabolic discontinuity in a stratified prokaryote microbiome of a Red Sea deep halocline. The Isme Journal. PMID 33649556 DOI: 10.1038/s41396-021-00931-z  0.308
2020 Aalismail NA, Díaz-Rúa R, Ngugi DK, Cusack M, Duarte CM. Aeolian Prokaryotic Communities of the Global Dust Belt Over the Red Sea. Frontiers in Microbiology. 11: 538476. PMID 33262740 DOI: 10.3389/fmicb.2020.538476  0.324
2020 Thiel J, Spring S, Tindall BJ, Spröer C, Bunk B, Koeksoy E, Ngugi DK, Schink B, Pester M. Desulfolutivibrio sulfoxidireducens gen. nov., sp. nov., isolated from a pyrite-forming enrichment culture and reclassification of Desulfovibrio sulfodismutans as Desulfolutivibrio sulfodismutans comb. nov. Systematic and Applied Microbiology. 43: 126105. PMID 32847780 DOI: 10.1016/J.Syapm.2020.126105  0.704
2020 Duarte CM, Ngugi DK, Alam I, Pearman J, Kamau A, Eguiluz VM, Gojobori T, Acinas SG, Gasol JM, Bajic V, Irigoien X. Sequencing Effort Dictates Gene Discovery in Marine Microbial Metagenomes. Environmental Microbiology. PMID 32743860 DOI: 10.1111/1462-2920.15182  0.437
2020 Ngugi DK, Ziegler M, Duarte CM, Voolstra CR. Genomic Blueprint of Glycine Betaine Metabolism in Coral Metaorganisms and Their Contribution to Reef Nitrogen Budgets. Iscience. 23: 101120. PMID 32438323 DOI: 10.1016/J.Isci.2020.101120  0.419
2020 Tietbohl MD, Ngugi DK, Berumen ML. A Unique Bellyful: Extraordinary Gut Microbes Help Herbivorous Fish Eat Seaweeds Frontiers For Young Minds. 8. DOI: 10.3389/Frym.2020.00058  0.327
2019 Aalismail NA, Ngugi DK, Díaz-Rúa R, Alam I, Cusack M, Duarte CM. Functional metagenomic analysis of dust-associated microbiomes above the Red Sea. Scientific Reports. 9: 13741. PMID 31551441 DOI: 10.1038/S41598-019-50194-0  0.34
2019 Guan Y, Ngugi DK, Vinu M, Blom J, Alam I, Guillot S, Ferry JG, Stingl U. Comparative Genomics of the Genus , Including a Newly Isolated Strain From Kebrit Deep in the Red Sea. Frontiers in Microbiology. 10: 839. PMID 31068917 DOI: 10.3389/Fmicb.2019.00839  0.734
2019 Thompson LR, Haroon MF, Shibl AA, Cahill MJ, Ngugi DK, Williams GJ, Morton JT, Knight R, Goodwin KD, Stingl U. Red Sea SAR11 and Single-cell Genomes Reflect Globally Distributed Pangenomes. Applied and Environmental Microbiology. PMID 31028022 DOI: 10.1128/Aem.00369-19  0.744
2018 Shibl AA, Ngugi DK, Talarmin A, Thompson LR, Blom J, Stingl U. The genome of a novel isolate of Prochlorococcus from the Red Sea contains transcribed genes for compatible solute biosynthesis. Fems Microbiology Ecology. PMID 30188995 DOI: 10.1093/Femsec/Fiy182  0.728
2018 Ngugi DK, Stingl U. High-Quality Draft Single-Cell Genome Sequence of the NS5 Marine Group from the Coastal Red Sea. Genome Announcements. 6. PMID 29930069 DOI: 10.1128/Genomea.00565-18  0.707
2018 Merlino G, Barozzi A, Michoud G, Ngugi DK, Daffonchio D. Microbial ecology of deep-sea hypersaline anoxic basins. Fems Microbiology Ecology. 94. PMID 29905791 DOI: 10.1093/Femsec/Fiy085  0.327
2018 Ngugi DK, Stingl U. High-Quality Draft Single-Cell Genome Sequence Belonging to the Archaeal Candidate Division SA1, Isolated from Nereus Deep in the Red Sea. Genome Announcements. 6. PMID 29748404 DOI: 10.1128/Genomea.00383-18  0.709
2017 Hackmann TJ, Ngugi DK, Firkins JL, Tao J. Genomes of rumen bacteria encode atypical pathways for fermenting hexoses to short-chain fatty acids. Environmental Microbiology. PMID 28892251 DOI: 10.1111/1462-2920.13929  0.366
2017 Ngugi DK, Miyake S, Cahill M, Vinu M, Hackmann TJ, Blom J, Tietbohl MD, Berumen ML, Stingl U. Genomic diversification of giant enteric symbionts reflects host dietary lifestyles. Proceedings of the National Academy of Sciences of the United States of America. PMID 28835538 DOI: 10.1073/Pnas.1703070114  0.695
2017 Jimenez-Infante F, Ngugi DK, Vinu M, Blom J, Alam I, Bajic VB, Stingl U. Genomic Characterization of Two Novel SAR11 Isolates From the Red Sea, Including the First Strain of the SAR11 Ib clade. Fems Microbiology Ecology. PMID 28645159 DOI: 10.1093/Femsec/Fix083  0.725
2016 Miyake S, Ngugi DK, Stingl U. Phylogenetic Diversity, Distribution, and Cophylogeny of Giant Bacteria (Epulopiscium) with their Surgeonfish Hosts in the Red Sea. Frontiers in Microbiology. 7: 285. PMID 27014209 DOI: 10.3389/Fmicb.2016.00285  0.717
2016 Ngugi DK, Blom J, Stepanauskas R, Stingl U. Diversification and niche adaptations of Nitrospina-like bacteria in the polyextreme interfaces of Red Sea brines. The Isme Journal. 10: 1383-99. PMID 26657763 DOI: 10.1038/Ismej.2015.214  0.704
2016 Shibl AA, Haroon MF, Ngugi DK, Thompson LR, Stingl U. Distribution of Prochlorococcus Ecotypes in the Red Sea Basin Based on Analyses of rpoC1 Sequences Frontiers in Marine Science. 3. DOI: 10.3389/Fmars.2016.00104  0.693
2015 Jimenez-Infante F, Ngugi DK, Vinu M, Alam I, Kamau AA, Blom J, Bajic VB, Stingl U. Comprehensive Genomic Analyses of the OM43 Clade, Including a Novel Species from the Red Sea, Indicate Ecotype Differentiation among Marine Methylotrophs. Applied and Environmental Microbiology. 82: 1215-26. PMID 26655752 DOI: 10.1128/Aem.02852-15  0.659
2015 Guan Y, Hikmawan T, Antunes A, Ngugi D, Stingl U. Diversity of methanogens and sulfate-reducing bacteria in the interfaces of five deep-sea anoxic brines of the Red Sea. Research in Microbiology. PMID 26192212 DOI: 10.1016/J.Resmic.2015.07.002  0.701
2015 Miyake S, Ngugi DK, Stingl U. Diet strongly influences the gut microbiota of surgeonfishes. Molecular Ecology. 24: 656-72. PMID 25533191 DOI: 10.1111/Mec.13050  0.683
2014 Guan Y, Ngugi DK, Blom J, Ali S, Ferry JG, Stingl U. Draft Genome Sequence of an Obligately Methylotrophic Methanogen, Methanococcoides methylutens, Isolated from Marine Sediment. Genome Announcements. 2. PMID 25414501 DOI: 10.1128/Genomea.01184-14  0.699
2014 Shibl AA, Thompson LR, Ngugi DK, Stingl U. Distribution and diversity of Prochlorococcus ecotypes in the Red Sea. Fems Microbiology Letters. 356: 118-26. PMID 24888561 DOI: 10.1111/1574-6968.12490  0.71
2014 Jimenez-Infante F, Ngugi DK, Alam I, Rashid M, Baalawi W, Kamau AA, Bajic VB, Stingl U. Genomic differentiation among two strains of the PS1 clade isolated from geographically separated marine habitats. Fems Microbiology Ecology. 89: 181-97. PMID 24785133 DOI: 10.1111/1574-6941.12348  0.721
2013 Acosta F, Ngugi DK, Stingl U. Diversity of picoeukaryotes at an oligotrophic site off the Northeastern Red Sea Coast. Aquatic Biosystems. 9: 16. PMID 23962380 DOI: 10.1186/2046-9063-9-16  0.683
2013 Thompson LR, Field C, Romanuk T, Ngugi D, Siam R, El Dorry H, Stingl U. Patterns of ecological specialization among microbial populations in the Red Sea and diverse oligotrophic marine environments. Ecology and Evolution. 3: 1780-97. PMID 23789085 DOI: 10.1002/Ece3.593  0.694
2012 Ngugi DK, Stingl U. Combined analyses of the ITS loci and the corresponding 16S rRNA genes reveal high micro- and macrodiversity of SAR11 populations in the Red Sea. Plos One. 7: e50274. PMID 23185592 DOI: 10.1371/Journal.Pone.0050274  0.718
2012 Ngugi DK, Antunes A, Brune A, Stingl U. Biogeography of pelagic bacterioplankton across an antagonistic temperature-salinity gradient in the Red Sea. Molecular Ecology. 21: 388-405. PMID 22133021 DOI: 10.1111/J.1365-294X.2011.05378.X  0.768
2012 Ngugi DK, Brune A. Nitrate reduction, nitrous oxide formation, and anaerobic ammonia oxidation to nitrite in the gut of soil-feeding termites (Cubitermes and Ophiotermes spp.). Environmental Microbiology. 14: 860-71. PMID 22118414 DOI: 10.1111/J.1462-2920.2011.02648.X  0.576
2012 Stingl U, Ngugi DK, Thompson L, Antunes A, Cahill M. Marine microbiology: Microbial ecology of the Red Sea | Mikrobielle Ökologie des Roten Meeres Biospektrum. 18: 582-586. DOI: 10.1007/S12268-012-0231-7  0.461
2011 Antunes A, Ngugi DK, Stingl U. Microbiology of the Red Sea (and other) deep-sea anoxic brine lakes. Environmental Microbiology Reports. 3: 416-33. PMID 23761304 DOI: 10.1111/J.1758-2229.2011.00264.X  0.693
2011 Ngugi DK, Ji R, Brune A. Nitrogen mineralization, denitrification, and nitrate ammonification by soil-feeding termites: a 15N-based approach Biogeochemistry. 103: 355-369. DOI: 10.1007/S10533-010-9478-6  0.618
2007 Ngugi DK, Tsanuo MK, Boga HI. Benzoic acid-degrading bacteria from the intestinal tract of Macrotermes michaelseni Sjöstedt. Journal of Basic Microbiology. 47: 87-92. PMID 17304624 DOI: 10.1002/Jobm.200610142  0.325
2005 Ngugi DK, Tsanuo MK, Boga HI. Rhodococcus opacus strain RW, a resorcinol-degrading bacterium from the gut of Macrotermes michaelseni African Journal of Biotechnology. 4: 839-845. DOI: 10.5897/Ajb2005.000-3116  0.405
Low-probability matches (unlikely to be authored by this person)
2021 Alam I, Kamau AA, Ngugi DK, Gojobori T, Duarte CM, Bajic VB. KAUST Metagenomic Analysis Platform (KMAP), enabling access to massive analytics of re-annotated metagenomic data. Scientific Reports. 11: 11511. PMID 34075103 DOI: 10.1038/s41598-021-90799-y  0.292
2023 Fusi M, Ngugi DK, Marasco R, Booth JM, Cardinale M, Sacchi L, Clementi E, Yang X, Garuglieri E, Fodelianakis S, Michoud G, Daffonchio D. Gill-associated bacteria are homogeneously selected in amphibious mangrove crabs to sustain host intertidal adaptation. Microbiome. 11: 189. PMID 37612775 DOI: 10.1186/s40168-023-01629-4  0.279
2022 Pogoreutz C, Oakley CA, Rädecker N, Cárdenas A, Perna G, Xiang N, Peng L, Davy SK, Ngugi DK, Voolstra CR. Coral holobiont cues prime Endozoicomonas for a symbiotic lifestyle. The Isme Journal. PMID 35444262 DOI: 10.1038/s41396-022-01226-7  0.232
2023 Meyer Cifuentes IE, Degenhardt J, Neumann-Schaal M, Jehmlich N, Ngugi DK, Öztürk B. Comparative biodegradation analysis of three compostable polyesters by a marine microbial community. Applied and Environmental Microbiology. e0106023. PMID 38014952 DOI: 10.1128/aem.01060-23  0.208
2021 Alam I, Kamau AA, Ngugi DK, Gojobori T, Duarte CM, Bajic VB. Publisher Correction: KAUST Metagenomic Analysis Platform (KMAP), enabling access to massive analytics of re-annotated metagenomic data. Scientific Reports. 11: 13992. PMID 34211073 DOI: 10.1038/s41598-021-93386-3  0.124
2022 Nyamu N, Sugut J, Mochache T, Kimeu P, Mukundi G, Ngugi D, Njonjo S, Mustafa A, Mbuvi P, Nyagaki E, Kironji G, Wanjiku G, Wachira B. Facility-Oriented Simulation-Based Emergency Care Training in Kenya: A Practical Approach for Low- and Middle-Income Countries. Critical Care Clinics. 38: 839-852. PMID 36162914 DOI: 10.1016/j.ccc.2022.06.012  0.028
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