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David Aaron Shub - Publications

Affiliations: 
Biology State University of New York, Albany, Albany, NY, United States 
Area:
moleculat biology of bacteria and bacteriophage; gene regulation; RNA splicing; horizontal gene transfer
Website:
https://www.albany.edu/~shub/
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23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2012 Salman V, Amann R, Shub DA, Schulz-Vogt HN. Multiple self-splicing introns in the 16S rRNA genes of giant sulfur bacteria. Proceedings of the National Academy of Sciences of the United States of America. 109: 4203-8. PMID 22371583 DOI: 10.1073/pnas.1120192109  0.436
2012 Salman V, Amann R, Shub DA, Schulz-Vogt HN. Multiple self-splicing introns in the 16S rRNA genes of giant sulfur bacteria. Proceedings of the National Academy of Sciences of the United States of America. 109: 4203-8. PMID 22371583 DOI: 10.1073/pnas.1120192109  0.436
2011 Bonocora RP, Zeng Q, Abel EV, Shub DA. A homing endonuclease and the 50-nt ribosomal bypass sequence of phage T4 constitute a mobile DNA cassette. Proceedings of the National Academy of Sciences of the United States of America. 108: 16351-6. PMID 21930924 DOI: 10.1073/pnas.1107633108  0.647
2011 Bonocora RP, Zeng Q, Abel EV, Shub DA. A homing endonuclease and the 50-nt ribosomal bypass sequence of phage T4 constitute a mobile DNA cassette. Proceedings of the National Academy of Sciences of the United States of America. 108: 16351-6. PMID 21930924 DOI: 10.1073/pnas.1107633108  0.5
2009 Zeng Q, Bonocora RP, Shub DA. A free-standing homing endonuclease targets an intron insertion site in the psbA gene of cyanophages. Current Biology : Cb. 19: 218-22. PMID 19200728 DOI: 10.1016/j.cub.2008.11.069  0.636
2009 Bonocora RP, Shub DA. A likely pathway for formation of mobile group I introns. Current Biology : Cb. 19: 223-8. PMID 19200727 DOI: 10.1016/j.cub.2009.01.033  0.689
2009 Bonocora RP, Shub DA. A likely pathway for formation of mobile group I introns. Current Biology : Cb. 19: 223-8. PMID 19200727 DOI: 10.1016/j.cub.2009.01.033  0.634
2007 Zhao L, Bonocora RP, Shub DA, Stoddard BL. The restriction fold turns to the dark side: a bacterial homing endonuclease with a PD-(D/E)-XK motif. The Embo Journal. 26: 2432-42. PMID 17410205 DOI: 10.1038/Sj.Emboj.7601672  0.628
2006 Landthaler M, Shen BW, Stoddard BL, Shub DA. I-BasI and I-HmuI: two phage intron-encoded endonucleases with homologous DNA recognition sequences but distinct DNA specificities. Journal of Molecular Biology. 358: 1137-51. PMID 16569414 DOI: 10.1016/J.Jmb.2006.02.054  0.524
2004 Bonocora RP, Shub DA. A self-splicing group I intron in DNA polymerase genes of T7-like bacteriophages. Journal of Bacteriology. 186: 8153-5. PMID 15547290 DOI: 10.1128/JB.186.23.8153-8155.2004  0.669
2004 Bonocora RP, Shub DA. A self-splicing group I intron in DNA polymerase genes of T7-like bacteriophages. Journal of Bacteriology. 186: 8153-5. PMID 15547290 DOI: 10.1128/JB.186.23.8153-8155.2004  0.57
2004 Edgell DR, Derbyshire V, Van Roey P, LaBonne S, Stanger MJ, Li Z, Boyd TM, Shub DA, Belfort M. Intron-encoded homing endonuclease I-TevI also functions as a transcriptional autorepressor. Nature Structural & Molecular Biology. 11: 936-44. PMID 15361856 DOI: 10.1038/Nsmb823  0.389
2004 Shen BW, Landthaler M, Shub DA, Stoddard BL. DNA binding and cleavage by the HNH homing endonuclease I-HmuI. Journal of Molecular Biology. 342: 43-56. PMID 15313606 DOI: 10.1016/J.Jmb.2004.07.032  0.337
2004 Millard A, Clokie MR, Shub DA, Mann NH. Genetic organization of the psbAD region in phages infecting marine Synechococcus strains. Proceedings of the National Academy of Sciences of the United States of America. 101: 11007-12. PMID 15263091 DOI: 10.1073/pnas.0401478101  0.388
2004 Millard A, Clokie MR, Shub DA, Mann NH. Genetic organization of the psbAD region in phages infecting marine Synechococcus strains. Proceedings of the National Academy of Sciences of the United States of America. 101: 11007-12. PMID 15263091 DOI: 10.1073/pnas.0401478101  0.388
2004 Landthaler M, Lau NC, Shub DA. Group I intron homing in Bacillus phages SPO1 and SP82: a gene conversion event initiated by a nicking homing endonuclease. Journal of Bacteriology. 186: 4307-14. PMID 15205433 DOI: 10.1128/JB.186.13.4307-4314.2004  0.367
2004 Landthaler M, Lau NC, Shub DA. Group I intron homing in Bacillus phages SPO1 and SP82: a gene conversion event initiated by a nicking homing endonuclease. Journal of Bacteriology. 186: 4307-14. PMID 15205433 DOI: 10.1128/JB.186.13.4307-4314.2004  0.367
2003 Liu Q, Belle A, Shub DA, Belfort M, Edgell DR. SegG endonuclease promotes marker exclusion and mediates co-conversion from a distant cleavage site. Journal of Molecular Biology. 334: 13-23. PMID 14596796 DOI: 10.1016/J.Jmb.2003.09.027  0.389
2003 Landthaler M, Shub DA. The nicking homing endonuclease I-BasI is encoded by a group I intron in the DNA polymerase gene of the Bacillus thuringiensis phage Bastille. Nucleic Acids Research. 31: 3071-7. PMID 12799434 DOI: 10.1093/nar/gkg433  0.475
2003 Landthaler M, Shub DA. The nicking homing endonuclease I-BasI is encoded by a group I intron in the DNA polymerase gene of the Bacillus thuringiensis phage Bastille. Nucleic Acids Research. 31: 3071-7. PMID 12799434 DOI: 10.1093/nar/gkg433  0.475
2002 Landthaler M, Begley U, Lau NC, Shub DA. Two self-splicing group I introns in the ribonucleotide reductase large subunit gene of Staphylococcus aureus phage Twort. Nucleic Acids Research. 30: 1935-43. PMID 11972330 DOI: 10.1093/nar/30.9.1935  0.534
2002 Landthaler M, Begley U, Lau NC, Shub DA. Two self-splicing group I introns in the ribonucleotide reductase large subunit gene of Staphylococcus aureus phage Twort. Nucleic Acids Research. 30: 1935-43. PMID 11972330 DOI: 10.1093/nar/30.9.1935  0.534
2002 Belle A, Landthaler M, Shub DA. Intronless homing: site-specific endonuclease SegF of bacteriophage T4 mediates localized marker exclusion analogous to homing endonucleases of group I introns. Genes & Development. 16: 351-62. PMID 11825876 DOI: 10.1101/gad.960302  0.501
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