| Year |
Citation |
Score |
| Low-probability matches (unlikely to be authored by this person) |
| 2024 |
Han L, Pendleton A, Singh A, Xu R, Scott SA, Palma JA, Diebold P, Malarney KP, Brito IL, Chang PV. Chemoproteomic profiling of substrate specificity in gut microbiota-associated bile salt hydrolases. Biorxiv : the Preprint Server For Biology. PMID 38617281 DOI: 10.1101/2024.04.01.587558 |
0.01 |
|
| 2024 |
Zhao L, Arias SL, Zipfel W, Brito IL, Yeo J. Coarse-grained modeling and dynamics tracking of nanoparticles diffusion in human gut mucus. International Journal of Biological Macromolecules. 131434. PMID 38614182 DOI: 10.1016/j.ijbiomac.2024.131434 |
0.01 |
|
| 2024 |
Reuter MA, Tucker M, Marfori Z, Shishani R, Bustamante JM, Moreno R, Goodson ML, Ehrlich A, Taha AY, Lein PJ, Joshi N, Brito I, Durbin-Johnson B, Nandakumar R, Cummings BP. Dietary resistant starch supplementation increases gut luminal deoxycholic acid abundance in mice. Gut Microbes. 16: 2315632. PMID 38375831 DOI: 10.1080/19490976.2024.2315632 |
0.01 |
|
| 2024 |
Jones J, Shi Q, Nath RR, Brito IL. Keystone pathobionts associated with colorectal cancer promote oncogenic reprograming. Plos One. 19: e0297897. PMID 38363784 DOI: 10.1371/journal.pone.0297897 |
0.01 |
|
| 2024 |
Bowers RM, Gonzalez-Pena V, Wardhani K, Goudeau D, Blow MJ, Udwary D, Klein D, Vill AC, Brito IL, Woyke T, Malmstrom R, Gawad C. scMicrobe PTA: Near Complete Genomes from Single Bacterial Cells. Biorxiv : the Preprint Server For Biology. PMID 38352480 DOI: 10.1101/2024.01.30.577819 |
0.01 |
|
| 2024 |
Cyphert EL, Liu C, Morales AL, Nixon JC, Blackford E, Garcia M, Cevallos N, Turnbaugh PJ, Brito IL, Booth SL, Hernandez CJ. Effects of long-term high dose aspartame on body mass, bone strength, femoral geometry, and microbiota composition in a young and aged cohort of male and female mice. Biorxiv : the Preprint Server For Biology. PMID 38260245 DOI: 10.1101/2024.01.02.573970 |
0.01 |
|
| 2024 |
Xiao X, Le HH, Lee M-T, Lamm D, Johnson EL, Brito IL. variants among a single host diverge in sphingolipid production. Mbio. e0240923. PMID 38236049 DOI: 10.1128/mbio.02409-23 |
0.01 |
|
| 2024 |
Sarkar A, McInroy CJA, Harty S, Raulo A, Ibata NGO, Valles-Colomer M, Johnson KV, Brito IL, Henrich J, Archie EA, Barreiro LB, Gazzaniga FS, Finlay BB, Koonin EV, Carmody RN, et al. Microbial transmission in the social microbiome and host health and disease. Cell. 187: 17-43. PMID 38181740 DOI: 10.1016/j.cell.2023.12.014 |
0.01 |
|
| 2024 |
Vill AC, Rice EJ, De Vlaminck I, Danko CG, Brito IL. Precision run-on sequencing (PRO-seq) for microbiome transcriptomics. Nature Microbiology. 9: 241-250. PMID 38172625 DOI: 10.1038/s41564-023-01558-w |
0.01 |
|
| 2023 |
Diebold PJ, Rhee MW, Shi Q, Trung NV, Umrani F, Ahmed S, Kulkarni V, Deshpande P, Alexander M, Thi Hoa N, Christakis NA, Iqbal NT, Ali SA, Mathad JS, Brito IL. Clinically relevant antibiotic resistance genes are linked to a limited set of taxa within gut microbiome worldwide. Nature Communications. 14: 7366. PMID 37963868 DOI: 10.1038/s41467-023-42998-6 |
0.01 |
|
| 2023 |
Balint D, Brito IL. Human-gut bacterial protein-protein interactions: understudied but impactful to human health. Trends in Microbiology. PMID 37805334 DOI: 10.1016/j.tim.2023.09.009 |
0.01 |
|
| 2023 |
Loyola Irizarry HG, Brito IL. Characterizing conjugative plasmids from an antibiotic-resistant dataset for use as broad-host delivery vectors. Frontiers in Microbiology. 14: 1199640. PMID 37389338 DOI: 10.3389/fmicb.2023.1199640 |
0.01 |
|
| 2023 |
Grodner B, Shi H, Farchione O, Vill AC, Ntekas I, Diebold PJ, Zipfel WR, Brito IL, De Vlaminck I. Spatial Mapping of Mobile Genetic Elements and their Cognate Hosts in Complex Microbiomes. Biorxiv : the Preprint Server For Biology. PMID 37333098 DOI: 10.1101/2023.06.09.544291 |
0.01 |
|
| 2023 |
Jones J, Shi Q, Nath RR, Brito IL. Keystone pathobionts associated with colorectal cancer promote oncogenic reprograming. Biorxiv : the Preprint Server For Biology. PMID 37066368 DOI: 10.1101/2023.04.03.535410 |
0.01 |
|
| 2023 |
Danko C, Chivu A, Abuhashem A, Barshad G, Rice E, Leger M, Vill A, Wong W, Brady R, Smith J, Wikramanayake A, Arenas-Mena C, Brito I, Ruiz-Trillo I, Hadjantonakis AK, et al. Evolution of promoter-proximal pausing enabled a new layer of transcription control. Research Square. PMID 36993251 DOI: 10.21203/rs.3.rs-2679520/v1 |
0.01 |
|
| 2023 |
Ma Y, Sannino D, Linden JR, Haigh S, Zhao B, Grigg JB, Zumbo P, Dündar F, Butler DJ, Profaci CP, Telesford KM, Winokur PN, Rumah KR, Gauthier SA, Fischetti VA, ... ... Brito IL, et al. Epsilon toxin-producing Clostridium perfringens colonize the MS gut and epsilon toxin overcomes immune privilege. The Journal of Clinical Investigation. PMID 36853799 DOI: 10.1172/JCI163239 |
0.01 |
|
| 2022 |
Porras AM, Zhou H, Shi Q, Xiao X, Longman R, Brito IL. Inflammatory Bowel Disease-Associated Gut Commensals Degrade Components of the Extracellular Matrix. Mbio. e0220122. PMID 36445085 DOI: 10.1128/mbio.02201-22 |
0.01 |
|
| 2022 |
Brito IL, Kriegel MA. Structural host immune-microbiota interactions. Current Opinion in Structural Biology. 76: 102445. PMID 36063760 DOI: 10.1016/j.sbi.2022.102445 |
0.01 |
|
| 2022 |
Post SE, Brito IL. Structural insight into protein-protein interactions between intestinal microbiome and host. Current Opinion in Structural Biology. 74: 102354. PMID 35390637 DOI: 10.1016/j.sbi.2022.102354 |
0.01 |
|
| 2022 |
Graney PL, Zhong Z, Post S, Brito I, Singh A. Engineering early memory B-cell-like phenotype in hydrogel-based immune organoids. Journal of Biomedical Materials Research. Part A. PMID 35388946 DOI: 10.1002/jbm.a.37388 |
0.01 |
|
| 2022 |
New FN, Baer BR, Clark AG, Wells MT, Brito IL. Collective effects of human genomic variation on microbiome function. Scientific Reports. 12: 3839. PMID 35264618 DOI: 10.1038/s41598-022-07632-3 |
0.01 |
|
| 2022 |
Zhou H, Beltrán JF, Brito IL. Host-microbiome protein-protein interactions capture disease-relevant pathways. Genome Biology. 23: 72. PMID 35246229 DOI: 10.1186/s13059-022-02643-9 |
0.01 |
|
| 2021 |
Zhou H, Beltrán JF, Brito IL. Functions predict horizontal gene transfer and the emergence of antibiotic resistance. Science Advances. 7: eabj5056. PMID 34678056 DOI: 10.1126/sciadv.abj5056 |
0.01 |
|
| 2021 |
Arias SL, Brito IL. Biophysical determinants of biofilm formation in the gut. Current Opinion in Biomedical Engineering. 18. PMID 34504987 DOI: 10.1016/j.cobme.2021.100275 |
0.01 |
|
| 2021 |
Porras AM, Shi Q, Zhou H, Callahan R, Montenegro-Bethancourt G, Solomons N, Brito IL. Geographic differences in gut microbiota composition impact susceptibility to enteric infection. Cell Reports. 36: 109457. PMID 34320343 DOI: 10.1016/j.celrep.2021.109457 |
0.01 |
|
| 2021 |
Diebold PJ, New FN, Hovan M, Satlin MJ, Brito IL. Linking plasmid-based beta-lactamases to their bacterial hosts using single-cell fusion PCR. Elife. 10. PMID 34282723 DOI: 10.7554/eLife.66834 |
0.01 |
|
| 2021 |
Brito IL. The comings and goings of the healthy human gut microbiota. Cell Host & Microbe. 29: 1163-1164. PMID 34265247 DOI: 10.1016/j.chom.2021.06.011 |
0.01 |
|
| 2021 |
N'Guessan A, Brito IL, Serohijos AWR, Shapiro BJ. Mobile gene sequence evolution within individual human gut microbiomes is better explained by gene-specific than host-specific selective pressures. Genome Biology and Evolution. PMID 34132784 DOI: 10.1093/gbe/evab142 |
0.01 |
|
| 2021 |
Brito IL. Examining horizontal gene transfer in microbial communities. Nature Reviews. Microbiology. 19: 442-453. PMID 33846600 DOI: 10.1038/s41579-021-00534-7 |
0.01 |
|
| 2021 |
Shin JH, Choe D, Ransegnola B, Hong HR, Onyekwere I, Cross T, Shi Q, Cho BK, Westblade LF, Brito IL, Dörr T. A multifaceted cellular damage repair and prevention pathway promotes high-level tolerance to β-lactam antibiotics. Embo Reports. e51790. PMID 33463026 DOI: 10.15252/embr.202051790 |
0.01 |
|
| 2021 |
Brito IL, Singh A. Editorial overview: Engineering human health by means of microbiome manipulation Current Opinion in Biomedical Engineering. 20: 100324. DOI: 10.1016/j.cobme.2021.100324 |
0.01 |
|
| 2020 |
Graney PL, Lai K, Post S, Brito I, Cyster J, Singh A. Organoid Polymer Functionality and Mode of Membrane Antigen Presentation Regulates Germinal Center Epigenetics in Young and Aged B Cells. Advanced Functional Materials. 30. PMID 33692664 DOI: 10.1002/Adfm.202001232 |
0.01 |
|
| 2020 |
Shi H, Shi Q, Grodner B, Lenz JS, Zipfel WR, Brito IL, De Vlaminck I. Highly multiplexed spatial mapping of microbial communities. Nature. PMID 33268897 DOI: 10.1038/s41586-020-2983-4 |
0.01 |
|
| 2020 |
Kent AG, Vill AC, Shi Q, Satlin MJ, Brito IL. Widespread transfer of mobile antibiotic resistance genes within individual gut microbiomes revealed through bacterial Hi-C. Nature Communications. 11: 4379. PMID 32873785 DOI: 10.1038/s41467-020-18164-7 |
0.01 |
|
| 2020 |
Luna M, Guss JD, Vasquez-Bolanos LS, Alepuz AJ, Dornevil S, Strong J, Alabi D, Shi Q, Pannellini T, Otero M, Brito IL, van der Meulen MCH, Goldring SR, Hernandez CJ. Obesity and Load-induced Post-traumatic Osteoarthritis in the Absence of Fracture or Surgical Trauma. Journal of Orthopaedic Research : Official Publication of the Orthopaedic Research Society. PMID 32658313 DOI: 10.1002/jor.24799 |
0.01 |
|
| 2020 |
New FN, Brito IL. What Is Metagenomics Teaching Us, and What Is Missed? Annual Review of Microbiology. 74: 117-135. PMID 32603623 DOI: 10.1146/annurev-micro-012520-072314 |
0.01 |
|
| 2019 |
Porras AM, Brito IL. The internationalization of human microbiome research. Current Opinion in Microbiology. 50: 50-55. PMID 31683111 DOI: 10.1016/j.mib.2019.09.012 |
0.01 |
|
| 2019 |
Hernandez CJ, Yang X, Ji G, Niu Y, Sethuraman AS, Koressel J, Shirley M, Fields MW, Chyou S, Li TM, Luna M, Callahan RL, Ross FP, Lu TT, Brito IL, et al. Disruption of the Gut Microbiome Increases the Risk of Periprosthetic Joint Infection in Mice. Clinical Orthopaedics and Related Research. PMID 31283731 DOI: 10.1097/CORR.0000000000000851 |
0.01 |
|
| 2019 |
Parasar B, Zhou H, Xiao X, Shi Q, Brito IL, Chang PV. Chemoproteomic Profiling of Gut Microbiota-Associated Bile Salt Hydrolase Activity. Acs Central Science. 5: 867-873. PMID 31139722 DOI: 10.1021/Acscentsci.9B00147 |
0.01 |
|
| 2019 |
Mosquera MJ, Kim S, Zhou H, Jing TT, Luna M, Guss JD, Reddy P, Lai K, Leifer CA, Brito IL, Hernandez CJ, Singh A. Immunomodulatory nanogels overcome restricted immunity in a murine model of gut microbiome-mediated metabolic syndrome. Science Advances. 5: eaav9788. PMID 30944865 DOI: 10.1126/sciadv.aav9788 |
0.01 |
|
| 2019 |
Brito IL, Gurry T, Zhao S, Huang K, Young SK, Shea TP, Naisilisili W, Jenkins AP, Jupiter SD, Gevers D, Alm EJ. Transmission of human-associated microbiota along family and social networks. Nature Microbiology. PMID 30911128 DOI: 10.1038/S41564-019-0409-6 |
0.01 |
|
| 2019 |
Yang Y, Higgins CH, Rehman I, Galvao KN, Brito IL, Bicalho ML, Song J, Wang H, Bicalho RC. The genomic diversity, virulence, and antimicrobial resistance of from cows and humans. Applied and Environmental Microbiology. PMID 30610074 DOI: 10.1128/Aem.02654-18 |
0.01 |
|
| 2018 |
Singh A, Brito I, Lammerding J. Beyond Tissue Stiffness and Bioadhesivity: Advanced Biomaterials to Model Tumor Microenvironments and Drug Resistance. Trends in Cancer. 4: 281-291. PMID 29606313 DOI: 10.1016/j.trecan.2018.01.008 |
0.01 |
|
| 2018 |
Ferguson PF, Breyta R, Brito I, Kurath G, LaDeau SL. An epidemiological model of virus transmission in salmonid fishes of the Columbia River Basin Ecological Modelling. 377: 1-15. DOI: 10.1016/J.Ecolmodel.2018.03.002 |
0.01 |
|
| 2017 |
Breyta R, Brito I, Ferguson P, Kurath G, Naish KA, Purcell MK, Wargo AR, LaDeau S. Transmission routes maintaining a viral pathogen of steelhead trout within a complex multi-host assemblage. Ecology and Evolution. 7: 8187-8200. PMID 29075442 DOI: 10.1002/Ece3.3276 |
0.01 |
|
| 2017 |
Brito IL, Yilmaz S, Huang K, Xu L, Jupiter SD, Jenkins AP, Naisilisili W, Tamminen M, Smillie CS, Wortman JR, Birren BW, Xavier RJ, Blainey PC, Singh AK, Gevers D, et al. Corrigendum: Mobile genes in the human microbiome are structured from global to individual scales. Nature. PMID 28329759 DOI: 10.1038/Nature20774 |
0.01 |
|
| 2017 |
Champer M, Wong AM, Champer J, Brito IL, Messer PW, Hou JY, Wright JD. The role of the vaginal microbiome in gynecological cancer: a review. Bjog : An International Journal of Obstetrics and Gynaecology. PMID 28278350 DOI: 10.1111/1471-0528.14631 |
0.01 |
|
| 2017 |
Breyta R, Brito I, Kurath G, LaDeau S. Infectious hematopoietic necrosis virus virological and genetic surveillance 2000-2012. Ecology. 98: 283. PMID 28052389 DOI: 10.1002/Ecy.1634 |
0.01 |
|
| 2016 |
Xu L, Brito IL, Alm EJ, Blainey PC. Virtual microfluidics for digital quantification and single-cell sequencing. Nature Methods. PMID 27479330 DOI: 10.1038/Nmeth.3955 |
0.01 |
|
| 2016 |
Brito IL, Yilmaz S, Huang K, Xu L, Jupiter SD, Jenkins AP, Naisilisili W, Tamminen M, Smillie CS, Wortman JR, Birren BW, Xavier RJ, Blainey PC, Singh AK, Gevers D, et al. Mobile genes in the human microbiome are structured from global to individual scales. Nature. PMID 27409808 DOI: 10.1038/Nature18927 |
0.01 |
|
| 2016 |
Brito IL, Alm EJ. Tracking Strains in the Microbiome: Insights from Metagenomics and Models. Frontiers in Microbiology. 7: 712. PMID 27242733 DOI: 10.3389/Fmicb.2016.00712 |
0.01 |
|
| 2016 |
Kennedy DA, Kurath G, Brito IL, Purcell MK, Read AF, Winton JR, Wargo AR. Potential drivers of virulence evolution in aquaculture. Evolutionary Applications. 9: 344-54. PMID 26834829 DOI: 10.1111/Eva.12342 |
0.01 |
|
| 2016 |
Kennedy DA, Kurath G, Brito IL, Purcell MK, Read AF, Winton JR, Wargo AR. Potential drivers of virulence evolution in aquaculture Evolutionary Applications. DOI: 10.1111/eva.12342 |
0.01 |
|
| 2015 |
Spencer SJ, Tamminen MV, Preheim SP, Guo MT, Briggs AW, Brito IL, A Weitz D, Pitkänen LK, Vigneault F, Virta MP, Alm EJ. Massively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers. The Isme Journal. PMID 26394010 DOI: 10.1038/Ismej.2015.124 |
0.01 |
|
| 2015 |
Cleary B, Brito IL, Huang K, Gevers D, Shea T, Young S, Alm EJ. Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning. Nature Biotechnology. PMID 26368049 DOI: 10.1038/Nbt.3329 |
0.01 |
|
| 2013 |
Preheim SP, Perrotta AR, Friedman J, Smilie C, Brito I, Smith MB, Alm E. Computational methods for high-throughput comparative analyses of natural microbial communities. Methods in Enzymology. 531: 353-70. PMID 24060130 DOI: 10.1016/B978-0-12-407863-5.00018-6 |
0.01 |
|
| 2011 |
Sheltzer JM, Blank HM, Pfau SJ, Tange Y, George BM, Humpton TJ, Brito IL, Hiraoka Y, Niwa O, Amon A. Aneuploidy drives genomic instability in yeast Science. 333: 1026-1030. PMID 21852501 DOI: 10.1126/Science.1206412 |
0.01 |
|
| 2010 |
Brito IL, Monje-Casas F, Amon A. The Lrs4-Csm1 monopolin complex associates with kinetochores during anaphase and is required for accurate chromosome segregation Cell Cycle. 9: 3611-3618. PMID 20818155 DOI: 10.4161/cc.9.17.12885 |
0.01 |
|
| 2010 |
Hung AY, Sung CC, Brito IL, Sheng M. Degradation of postsynaptic scaffold GKAP and regulation of dendritic spine morphology by the TRIM3 ubiquitin ligase in rat hippocampal neurons. Plos One. 5: e9842. PMID 20352094 DOI: 10.1371/journal.pone.0009842 |
0.01 |
|
| 2010 |
Brito IL, Yu HG, Amon A. Condensins promote coorientation of sister chromatids during meiosis I in budding yeast Genetics. 185: 55-64. PMID 20194961 DOI: 10.1534/Genetics.110.115139 |
0.01 |
|
| 2006 |
Huang J, Brito IL, Villén J, Gygi SP, Amon A, Moazed D. Inhibition of homologous recombination by a cohesin-associated clamp complex recruited to the rDNA recombination enhancer. Genes & Development. 20: 2887-901. PMID 17043313 DOI: 10.1101/Gad.1472706 |
0.01 |
|
| Hide low-probability matches. |