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Alan Pacheco - Publications

Affiliations: 
Bioinformatics Program Boston University, Boston, MA, United States 
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11 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Schäfer M, Pacheco AR, Künzler R, Bortfeld-Miller M, Field CM, Vayena E, Hatzimanikatis V, Vorholt JA. Metabolic interaction models recapitulate leaf microbiota ecology. Science (New York, N.Y.). 381: eadf5121. PMID 37410834 DOI: 10.1126/science.adf5121  0.37
2023 Pacheco AR, Vorholt JA. Resolving metabolic interaction mechanisms in plant microbiomes. Current Opinion in Microbiology. 74: 102317. PMID 37062173 DOI: 10.1016/j.mib.2023.102317  0.309
2022 Pacheco AR, Pauvert C, Kishore D, Segrè D. Toward FAIR Representations of Microbial Interactions. Msystems. e0065922. PMID 36005399 DOI: 10.1128/msystems.00659-22  0.593
2021 Ankrah NYD, Bernstein DB, Biggs M, Carey M, Engevik M, García-Jiménez B, Lakshmanan M, Pacheco AR, Sulheim S, Medlock GL. Enhancing Microbiome Research through Genome-Scale Metabolic Modeling. Msystems. 6: e0059921. PMID 34904863 DOI: 10.1128/mSystems.00599-21  0.616
2021 Dukovski I, Bajić D, Chacón JM, Quintin M, Vila JCC, Sulheim S, Pacheco AR, Bernstein DB, Riehl WJ, Korolev KS, Sanchez A, Harcombe WR, Segrè D. A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS). Nature Protocols. PMID 34635859 DOI: 10.1038/s41596-021-00593-3  0.693
2021 Moyer D, Pacheco AR, Bernstein DB, Segrè D. Stoichiometric Modeling of Artificial String Chemistries Reveals Constraints on Metabolic Network Structure. Journal of Molecular Evolution. PMID 34230992 DOI: 10.1007/s00239-021-10018-0  0.497
2021 Pacheco AR, Segrè D. An evolutionary algorithm for designing microbial communities via environmental modification. Journal of the Royal Society, Interface. 18: 20210348. PMID 34157894 DOI: 10.1098/rsif.2021.0348  0.637
2021 Pacheco AR, Osborne ML, Segrè D. Non-additive microbial community responses to environmental complexity. Nature Communications. 12: 2365. PMID 33888697 DOI: 10.1038/s41467-021-22426-3  0.643
2019 Pacheco AR, Segrè D. A multidimensional perspective on microbial interactions. Fems Microbiology Letters. PMID 31187139 DOI: 10.1093/Femsle/Fnz125  0.61
2019 Pacheco AR, Moel M, Segrè D. Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems. Nature Communications. 10: 103. PMID 30626871 DOI: 10.1038/S41467-018-07946-9  0.525
2018 Maoz BM, Herland A, FitzGerald EA, Grevesse T, Vidoudez C, Pacheco AR, Sheehy SP, Park TE, Dauth S, Mannix R, Budnik N, Shores K, Cho A, Nawroth JC, Segrè D, et al. A linked organ-on-chip model of the human neurovascular unit reveals the metabolic coupling of endothelial and neuronal cells. Nature Biotechnology. PMID 30125269 DOI: 10.1038/Nbt.4226  0.571
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