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Weihong Qi - Publications

Affiliations: 
Swiss Federal Institute of Technology in Zurich 
Area:
Genomics
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Zhong Z, Feng S, Mansfeld BN, Ke Y, Qi W, Lim YW, Gruissem W, Bart RS, Jacobsen SE. Haplotype-resolved DNA methylome of African cassava genome. Plant Biotechnology Journal. PMID 36318278 DOI: 10.1111/pbi.13955  0.485
2022 Lim YW, Mansfeld BN, Schläpfer P, Gilbert KB, Narayanan NN, Qi W, Wang Q, Zhong Z, Boyher A, Gehan J, Beyene G, Lin ZD, Esuma W, Feng S, Chanez C, et al. Mutations in DNA polymerase δ subunit 1 co-segregate with CMD2-type resistance to Cassava Mosaic Geminiviruses. Nature Communications. 13: 3933. PMID 35798722 DOI: 10.1038/s41467-022-31414-0  0.502
2022 Qi W, Lim YW, Patrignani A, Schläpfer P, Bratus-Neuenschwander A, Grüter S, Chanez C, Rodde N, Prat E, Vautrin S, Fustier MA, Pratas D, Schlapbach R, Gruissem W. The haplotype-resolved chromosome pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features. Gigascience. 11. PMID 35333302 DOI: 10.1093/gigascience/giac028  0.516
2021 Kubacki J, Hardmeier I, Qi W, Flacio E, Tonolla M, Fraefel C. Complete Genome Sequence of a Rhabdovirus Strain from Mosquitos Collected in Southern Switzerland. Microbiology Resource Announcements. 10. PMID 33414339 DOI: 10.1128/MRA.01234-20  0.345
2019 Kuon JE, Qi W, Schläpfer P, Hirsch-Hoffmann M, von Bieberstein PR, Patrignani A, Poveda L, Grob S, Keller M, Shimizu-Inatsugi R, Grossniklaus U, Vanderschuren H, Gruissem W. Haplotype-resolved genomes of geminivirus-resistant and geminivirus-susceptible African cassava cultivars. Bmc Biology. 17: 75. PMID 31533702 DOI: 10.1186/S12915-019-0697-6  0.513
2018 Qi W, Cascarano MC, Schlapbach R, Katharios P, Vaughan L, Seth-Smith HMB. Ca. Endozoicomonas cretensis: a novel fish pathogen characterised by genome plasticity. Genome Biology and Evolution. PMID 29726925 DOI: 10.1093/gbe/evy092  0.324
2017 Seth-Smith HM, Wanninger S, Bachmann N, Marti H, Qi W, Donati M, di Francesco A, Polkinghorne A, Borel N. The Chlamydia suis genome exhibits high levels of diversity, plasticity and mobile antibiotic resistance: comparative genomics of a recent livestock cohort shows influence of treatment regimes. Genome Biology and Evolution. PMID 28338777 DOI: 10.1093/gbe/evx043  0.362
2016 Qi W, Vaughan L, Katharios P, Schlapbach R, Seth-Smith HM. Host-associated genomic features of the novel uncultured intracellular pathogen Ca. Ichthyocystis revealed by direct sequencing of epitheliocysts. Genome Biology and Evolution. PMID 27190004 DOI: 10.1093/gbe/evw111  0.34
2015 Katharios P, Seth-Smith HM, Fehr A, Mateos JM, Qi W, Richter D, Nufer L, Ruetten M, Guevara Soto M, Ziegler U, Thomson NR, Schlapbach R, Vaughan L. Environmental marine pathogen isolation using mesocosm culture of sharpsnout seabream: striking genomic and morphological features of novel Endozoicomonas sp. Scientific Reports. 5: 17609. PMID 26639610 DOI: 10.1038/srep17609  0.33
2014 Schicht S, Qi W, Poveda L, Strube C. Whole transcriptome analysis of the poultry red mite Dermanyssus gallinae (De Geer, 1778). Parasitology. 141: 336-46. PMID 24135293 DOI: 10.1017/S0031182013001467  0.318
2012 Henson S, Bishop RP, Morzaria S, Spooner PR, Pelle R, Poveda L, Ebeling M, Küng E, Certa U, Daubenberger CA, Qi W. High-resolution genotyping and mapping of recombination and gene conversion in the protozoan Theileria parva using whole genome sequencing. Bmc Genomics. 13: 503. PMID 22998600 DOI: 10.1186/1471-2164-13-503  0.348
2012 Filippini M, Qi W, Blom J, Goesmann A, Smits TH, Bagheri HC. Genome sequence of Fibrella aestuarina BUZ 2(T), a filamentous marine bacterium. Journal of Bacteriology. 194: 3555. PMID 22689241 DOI: 10.1128/JB.00550-12  0.309
2009 Qi W, Käser M, Röltgen K, Yeboah-Manu D, Pluschke G. Genomic diversity and evolution of Mycobacterium ulcerans revealed by next-generation sequencing. Plos Pathogens. 5: e1000580. PMID 19806175 DOI: 10.1371/journal.ppat.1000580  0.357
2009 Abu-Ali GS, Lacher DW, Wick LM, Qi W, Whittam TS. Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex. Bmc Genomics. 10: 296. PMID 19575794 DOI: 10.1186/1471-2164-10-296  0.701
2009 Tennant SM, Tauschek M, Azzopardi K, Bigham A, Bennett-Wood V, Hartland EL, Qi W, Whittam TS, Robins-Browne RM. Characterisation of atypical enteropathogenic E. coli strains of clinical origin. Bmc Microbiology. 9: 117. PMID 19490652 DOI: 10.1186/1471-2180-9-117  0.58
2008 Manning SD, Motiwala AS, Springman AC, Qi W, Lacher DW, Ouellette LM, Mladonicky JM, Somsel P, Rudrik JT, Dietrich SE, Zhang W, Swaminathan B, Alland D, Whittam TS. Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks. Proceedings of the National Academy of Sciences of the United States of America. 105: 4868-73. PMID 18332430 DOI: 10.1073/Pnas.0710834105  0.732
2007 Bergholz TM, Wick LM, Qi W, Riordan JT, Ouellette LM, Whittam TS. Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium. Bmc Microbiology. 7: 97. PMID 17967175 DOI: 10.1186/1471-2180-7-97  0.718
2007 Cuomo CA, Güldener U, Xu JR, Trail F, Turgeon BG, Di Pietro A, Walton JD, Ma LJ, Baker SE, Rep M, Adam G, Antoniw J, Baldwin T, Calvo S, Chang YL, ... ... Qi W, et al. The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science (New York, N.Y.). 317: 1400-2. PMID 17823352 DOI: 10.1126/Science.1143708  0.657
2007 Alland D, Lacher DW, Hazbón MH, Motiwala AS, Qi W, Fleischmann RD, Whittam TS. Role of large sequence polymorphisms (LSPs) in generating genomic diversity among clinical isolates of Mycobacterium tuberculosis and the utility of LSPs in phylogenetic analysis. Journal of Clinical Microbiology. 45: 39-46. PMID 17079498 DOI: 10.1128/Jcm.02483-05  0.699
2006 Qi W, Kwon C, Trail F. Microarray analysis of transcript accumulation during perithecium development in the filamentous fungus Gibberella zeae (anamorph Fusarium graminearum). Molecular Genetics and Genomics : Mgg. 276: 87-100. PMID 16741730 DOI: 10.1007/S00438-006-0125-9  0.614
2006 Zhang W, Qi W, Albert TJ, Motiwala AS, Alland D, Hyytia-Trees EK, Ribot EM, Fields PI, Whittam TS, Swaminathan B. Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphisms. Genome Research. 16: 757-67. PMID 16606700 DOI: 10.1101/Gr.4759706  0.698
2006 Filliol I, Motiwala AS, Cavatore M, Qi W, Hazbón MH, Bobadilla del Valle M, Fyfe J, García-García L, Rastogi N, Sola C, Zozio T, Guerrero MI, León CI, Crabtree J, Angiuoli S, et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. Journal of Bacteriology. 188: 759-72. PMID 16385065 DOI: 10.1128/Jb.188.2.759-772.2006  0.542
2005 Gaffoor I, Brown DW, Plattner R, Proctor RH, Qi W, Trail F. Functional analysis of the polyketide synthase genes in the filamentous fungus Gibberella zeae (anamorph Fusarium graminearum). Eukaryotic Cell. 4: 1926-33. PMID 16278459 DOI: 10.1128/Ec.4.11.1926-1933.2005  0.64
2005 Wick LM, Qi W, Lacher DW, Whittam TS. Evolution of genomic content in the stepwise emergence of Escherichia coli O157:H7. Journal of Bacteriology. 187: 1783-91. PMID 15716450 DOI: 10.1128/Jb.187.5.1783-1791.2005  0.753
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