Seamus Holden - Publications

Affiliations: 
2010-2014 École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland 

15/28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Whitley KD, Grimshaw J, Holden S. Watching Bacterial Cell Division One Molecule at a Time in Vertical Cells. Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 29: 1070. PMID 37613179 DOI: 10.1093/micmic/ozad067.549  0.364
2022 Whitley KD, Middlemiss S, Jukes C, Dekker C, Holden S. High-resolution imaging of bacterial spatial organization with vertical cell imaging by nanostructured immobilization (VerCINI). Nature Protocols. PMID 35102310 DOI: 10.1038/s41596-021-00668-1  0.303
2021 Whitley KD, Jukes C, Tregidgo N, Karinou E, Almada P, Cesbron Y, Henriques R, Dekker C, Holden S. FtsZ treadmilling is essential for Z-ring condensation and septal constriction initiation in Bacillus subtilis cell division. Nature Communications. 12: 2448. PMID 33907196 DOI: 10.1038/s41467-021-22526-0  0.425
2020 Wu LJ, Lee S, Park S, Eland LE, Wipat A, Holden S, Errington J. Geometric principles underlying the proliferation of a model cell system. Nature Communications. 11: 4149. PMID 32811832 DOI: 10.1038/s41467-020-17988-7  0.359
2019 Perez AJ, Cesbron Y, Shaw SL, Bazan Villicana J, Tsui HT, Boersma MJ, Ye ZA, Tovpeko Y, Dekker C, Holden S, Winkler ME. Movement dynamics of divisome proteins and PBP2x:FtsW in cells of . Proceedings of the National Academy of Sciences of the United States of America. PMID 30718427 DOI: 10.1073/Pnas.1816018116  0.314
2018 Lambert A, Vanhecke A, Archetti A, Holden S, Schaber F, Pincus Z, Laub MT, Goley E, Manley S. Constriction Rate Modulation Can Drive Cell Size Control and Homeostasis in C. crescentus. Iscience. 4: 180-189. PMID 30240739 DOI: 10.1016/J.Isci.2018.05.020  0.445
2018 Holden S. Probing the mechanistic principles of bacterial cell division with super-resolution microscopy. Current Opinion in Microbiology. 43: 84-91. PMID 29324330 DOI: 10.1016/j.mib.2017.12.005  0.354
2017 Bisson-Filho AW, Hsu YP, Squyres GR, Kuru E, Wu F, Jukes C, Sun Y, Dekker C, Holden S, VanNieuwenhze MS, Brun YV, Garner EC. Treadmilling by FtsZ filaments drives peptidoglycan synthesis and bacterial cell division. Science (New York, N.Y.). 355: 739-743. PMID 28209898 DOI: 10.1126/Science.Aak9973  0.418
2016 Bergé M, Campagne S, Mignolet J, Holden S, Théraulaz L, Manley S, Allain FH, Viollier PH. Modularity and determinants of a (bi-)polarization control system from free-living and obligate intracellular bacteria. Elife. 5. PMID 28008852 DOI: 10.7554/Elife.20640  0.469
2016 Mignolet J, Holden S, Bergé M, Panis G, Eroglu E, Théraulaz L, Manley S, Viollier PH. Functional dichotomy and distinct nanoscale assemblies of a cell cycle-controlled bipolar zinc-finger regulator. Elife. 5. PMID 28008851 DOI: 10.7554/Elife.18647  0.553
2015 Carlini L, Holden SJ, Douglass KM, Manley S. Correction of a Depth-Dependent Lateral Distortion in 3D Super-Resolution Imaging. Plos One. 10: e0142949. PMID 26600467 DOI: 10.1371/Journal.Pone.0142949  0.489
2015 Pengo T, Holden SJ, Manley S. PALMsiever: a tool to turn raw data into results for single-molecule localization microscopy. Bioinformatics (Oxford, England). 31: 797-8. PMID 25362091 DOI: 10.1093/Bioinformatics/Btu720  0.426
2014 Min J, Holden SJ, Carlini L, Unser M, Manley S, Ye JC. 3D high-density localization microscopy using hybrid astigmatic/ biplane imaging and sparse image reconstruction. Biomedical Optics Express. 5: 3935-48. PMID 26526603 DOI: 10.1364/Boe.5.003935  0.492
2014 Min J, Vonesch C, Kirshner H, Carlini L, Olivier N, Holden S, Manley S, Ye JC, Unser M. FALCON: fast and unbiased reconstruction of high-density super-resolution microscopy data. Scientific Reports. 4: 4577. PMID 24694686 DOI: 10.1038/Srep04577  0.492
2014 Holden SJ, Pengo T, Meibom KL, Fernandez Fernandez C, Collier J, Manley S. High throughput 3D super-resolution microscopy reveals Caulobacter crescentus in vivo Z-ring organization. Proceedings of the National Academy of Sciences of the United States of America. 111: 4566-71. PMID 24616530 DOI: 10.1073/Pnas.1313368111  0.518
Low-probability matches (unlikely to be authored by this person)
2024 Whitley KD, Grimshaw J, Roberts DM, Karinou E, Stansfeld PJ, Holden S. Peptidoglycan synthesis drives a single population of septal cell wall synthases during division in Bacillus subtilis. Nature Microbiology. 9: 1064-1074. PMID 38480901 DOI: 10.1038/s41564-024-01650-9  0.261
2024 Whitley KD, Grimshaw J, Roberts DM, Karinou E, Stansfeld PJ, Holden S. Author Correction: Peptidoglycan synthesis drives a single population of septal cell wall synthases during division in Bacillus subtilis. Nature Microbiology. PMID 38750178 DOI: 10.1038/s41564-024-01725-7  0.261
2022 Spahn C, Gómez-de-Mariscal E, Laine RF, Pereira PM, von Chamier L, Conduit M, Pinho MG, Jacquemet G, Holden S, Heilemann M, Henriques R. DeepBacs for multi-task bacterial image analysis using open-source deep learning approaches. Communications Biology. 5: 688. PMID 35810255 DOI: 10.1038/s42003-022-03634-z  0.249
2013 Endesfelder U, Finan K, Holden SJ, Cook PR, Kapanidis AN, Heilemann M. Multiscale spatial organization of RNA polymerase in escherichia coli Biophysical Journal. 105: 172-181. PMID 23823236 DOI: 10.1016/J.Bpj.2013.05.048  0.19
2019 Sage D, Pham TA, Babcock H, Lukes T, Pengo T, Chao J, Velmurugan R, Herbert A, Agrawal A, Colabrese S, Wheeler A, Archetti A, Rieger B, Ober R, Hagen GM, ... ... Holden S, et al. Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software. Nature Methods. PMID 30962624 DOI: 10.1038/S41592-019-0364-4  0.183
2019 Sage D, Pham TA, Babcock H, Lukes T, Pengo T, Chao J, Velmurugan R, Herbert A, Agrawal A, Colabrese S, Wheeler A, Archetti A, Rieger B, Ober R, Hagen GM, ... ... Holden S, et al. Publisher Correction: Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software. Nature Methods. PMID 31097821 DOI: 10.1038/S41592-019-0453-4  0.168
2011 Torella JP, Holden SJ, Santoso Y, Hohlbein J, Kapanidis AN. Identifying molecular dynamics in single-molecule fret experiments with burst variance analysis Biophysical Journal. 100: 1568-1577. PMID 21402040 DOI: 10.1016/j.bpj.2011.01.066  0.164
2011 Holden SJ, Uphoff S, Kapanidis AN. DAOSTORM: An algorithm for high-density super-resolution microscopy Nature Methods. 8: 279-280. PMID 21451515 DOI: 10.1038/nmeth0411-279  0.147
2010 Uphoff S, Holden SJ, Le Reste L, Periz J, Van De Linde S, Heilemann M, Kapanidis AN. Monitoring multiple distances within a single molecule using switchable FRET Nature Methods. 7: 831-836. PMID 20818380 DOI: 10.1038/nmeth.1502  0.14
2010 Holden SJ, Uphoff S, Hohlbein J, Yadin D, Le Reste L, Britton OJ, Kapanidis AN. Defining the limits of single-molecule FRET resolution in TIRF microscopy Biophysical Journal. 99: 3102-3111. PMID 21044609 DOI: 10.1016/j.bpj.2010.09.005  0.133
2021 von Chamier L, Laine RF, Jukkala J, Spahn C, Krentzel D, Nehme E, Lerche M, Hernández-Pérez S, Mattila PK, Karinou E, Holden S, Solak AC, Krull A, Buchholz TO, Jones ML, et al. Democratising deep learning for microscopy with ZeroCostDL4Mic. Nature Communications. 12: 2276. PMID 33859193 DOI: 10.1038/s41467-021-22518-0  0.116
2010 Lymperopoulos K, Crawford R, Torella JP, Heilemann M, Hwang LC, Holden SJ, Kapanidis AN. Single-molecule DNA biosensors for protein and ligand detection Angewandte Chemie - International Edition. 49: 1316-1320. PMID 20077444 DOI: 10.1002/anie.200904597  0.108
2022 Hohlbein J, Diederich B, Marsikova B, Reynaud EG, Holden S, Jahr W, Haase R, Prakash K. Open microscopy in the life sciences: quo vadis? Nature Methods. 19: 1020-1025. PMID 36008630 DOI: 10.1038/s41592-022-01602-3  0.06
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