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Francisco J. Silva - Publications

Affiliations: 
Genetics Facultad de Biologia, Universidad de Valencia 
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39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Silva FJ, Santos-Garcia D, Zheng X, Zhang L, Han XY. Construction and Analysis of the Complete Genome Sequence of Leprosy Agent Mycobacterium lepromatosis. Microbiology Spectrum. e0169221. PMID 35467405 DOI: 10.1128/spectrum.01692-21  0.535
2021 Muñoz-Benavent M, Latorre A, Alemany-Cosme E, Marín-Miret J, Domínguez-Santos R, Silva FJ, Gil R, García-Ferris C. Gut Microbiota Cannot Compensate the Impact of (quasi) Aposymbiosis in . Biology. 10. PMID 34681115 DOI: 10.3390/biology10101013  0.441
2020 Silva FJ, Muñoz-Benavent M, García-Ferris C, Latorre A. Blattella germanica displays a large arsenal of antimicrobial peptide genes. Scientific Reports. 10: 21058. PMID 33273496 DOI: 10.1038/s41598-020-77982-3  0.587
2020 Quezada-Aguiluz M, Lincopan N, Cerdeira L, Fuga B, Silva F, Barrera B, Cifuentes M, Bello-Toledo H, Opazo-Capurro A, González-Rocha G. Draft genome sequence of a multidrug-resistant KPC-2 and SRT-2 co-producing Serratia marcescens strain isolated from a hospitalized patient in Chile. Journal of Global Antimicrobial Resistance. PMID 32061814 DOI: 10.1016/j.jgar.2020.02.004  0.334
2018 Santos-Garcia D, Juravel K, Freilich S, Zchori-Fein E, Latorre A, Moya A, Morin S, Silva FJ. To B or Not to B: Comparative Genomics Suggests as a Source of B Vitamins in Whiteflies. Frontiers in Microbiology. 9: 2254. PMID 30319574 DOI: 10.3389/Fmicb.2018.02254  0.642
2017 Santos-Garcia D, Silva FJ, Morin S, Dettner K, Kuechler SM. The all-rounder Sodalis - a new bacteriome-associated endosymbiont of the lygaeoid bug Henestaris halophilus (Heteroptera: Henestarinae) and a critical examination of its evolution. Genome Biology and Evolution. PMID 29036401 DOI: 10.1093/gbe/evx202  0.477
2016 Calle-Espinosa J, Ponce-de-Leon M, Santos-Garcia D, Silva FJ, Montero F, Peretó J. Nature lessons: the whitefly bacterial endosymbiont is a minimal amino acid factory with unusual energetics. Journal of Theoretical Biology. PMID 27473768 DOI: 10.1016/j.jtbi.2016.07.024  0.332
2015 Rao Q, Rollat-Farnier PA, Zhu DT, Santos-Garcia D, Silva FJ, Moya A, Latorre A, Klein CC, Vavre F, Sagot MF, Liu SS, Mouton L, Wang XW. Genome reduction and potential metabolic complementation of the dual endosymbionts in the whitefly Bemisia tabaci. Bmc Genomics. 16: 226. PMID 25887812 DOI: 10.1186/S12864-015-1379-6  0.671
2015 Santos-Garcia D, Vargas-Chavez C, Moya A, Latorre A, Silva FJ. Genome evolution in the primary endosymbiont of whiteflies sheds light on their divergence. Genome Biology and Evolution. 7: 873-88. PMID 25716826 DOI: 10.1093/Gbe/Evv038  0.656
2015 Rollat-Farnier PA, Santos-Garcia D, Rao Q, Sagot MF, Silva FJ, Henri H, Zchori-Fein E, Latorre A, Moya A, Barbe V, Liu SS, Wang XW, Vavre F, Mouton L. Two host clades, two bacterial arsenals: evolution through gene losses in facultative endosymbionts. Genome Biology and Evolution. 7: 839-55. PMID 25714744 DOI: 10.1093/Gbe/Evv030  0.668
2014 González-Candelas F, Alma Bracho M, Comas I, d'Auria G, D Unková M, García R, Gosalbes MJ, Isaac S, Latorre A, López-Labrador FX, Patiño Galindo JÁ, Palero F, Pérez-Brocal V, Pérez-Cobas AE, Sánchez-Busó L, ... Silva FJ, et al. [Molecular epidemiology studies on the immigrant population in Spain]. Revista Espaã±Ola De Salud PãºBlica. 88: 819-28. PMID 25418571 DOI: 10.4321/S1135-57272014000600013  0.397
2014 Santos-Garcia D, Silva FJ, Moya A, Latorre A. No exception to the rule: Candidatus Portiera aleyrodidarum cell wall revisited. Fems Microbiology Letters. 360: 132-6. PMID 25196985 DOI: 10.1111/1574-6968.12595  0.413
2014 Santos-Garcia D, Latorre A, Moya A, Gibbs G, Hartung V, Dettner K, Kuechler SM, Silva FJ. Small but powerful, the primary endosymbiont of moss bugs, Candidatus Evansia muelleri, holds a reduced genome with large biosynthetic capabilities. Genome Biology and Evolution. 6: 1875-93. PMID 25115011 DOI: 10.1093/Gbe/Evu149  0.621
2014 Santos-Garcia D, Rollat-Farnier PA, Beitia F, Zchori-Fein E, Vavre F, Mouton L, Moya A, Latorre A, Silva FJ. The genome of Cardinium cBtQ1 provides insights into genome reduction, symbiont motility, and its settlement in Bemisia tabaci. Genome Biology and Evolution. 6: 1013-30. PMID 24723729 DOI: 10.1093/Gbe/Evu077  0.703
2014 Oakeson KF, Gil R, Clayton AL, Dunn DM, von Niederhausern AC, Hamil C, Aoyagi A, Duval B, Baca A, Silva FJ, Vallier A, Jackson DG, Latorre A, Weiss RB, Heddi A, et al. Genome degeneration and adaptation in a nascent stage of symbiosis. Genome Biology and Evolution. 6: 76-93. PMID 24407854 DOI: 10.1093/Gbe/Evt210  0.693
2012 Santos-Garcia D, Farnier PA, Beitia F, Zchori-Fein E, Vavre F, Mouton L, Moya A, Latorre A, Silva FJ. Complete genome sequence of "Candidatus Portiera aleyrodidarum" BT-QVLC, an obligate symbiont that supplies amino acids and carotenoids to Bemisia tabaci. Journal of Bacteriology. 194: 6654-5. PMID 23144402 DOI: 10.1128/Jb.01793-12  0.609
2012 Lira F, Hernández A, Belda E, Sánchez MB, Moya A, Silva FJ, Martínez JL. Whole-genome sequence of Stenotrophomonas maltophilia D457, a clinical isolate and a model strain. Journal of Bacteriology. 194: 3563-4. PMID 22689246 DOI: 10.1128/Jb.00602-12  0.341
2012 Belda E, Silva FJ, Peretó J, Moya A. Metabolic networks of Sodalis glossinidius: a systems biology approach to reductive evolution. Plos One. 7: e30652. PMID 22292008 DOI: 10.1371/Journal.Pone.0030652  0.324
2011 Neef A, Latorre A, Peretó J, Silva FJ, Pignatelli M, Moya A. Genome economization in the endosymbiont of the wood roach Cryptocercus punctulatus due to drastic loss of amino acid synthesis capabilities. Genome Biology and Evolution. 3: 1437-48. PMID 22094859 DOI: 10.1093/Gbe/Evr118  0.65
2010 Belda E, Moya A, Bentley S, Silva FJ. Mobile genetic element proliferation and gene inactivation impact over the genome structure and metabolic capabilities of Sodalis glossinidius, the secondary endosymbiont of tsetse flies. Bmc Genomics. 11: 449. PMID 20649993 DOI: 10.1186/1471-2164-11-449  0.466
2008 Gil R, Belda E, Gosalbes MJ, Delaye L, Vallier A, Vincent-Monégat C, Heddi A, Silva FJ, Moya A, Latorre A. Massive presence of insertion sequences in the genome of SOPE, the primary endosymbiont of the rice weevil Sitophilus oryzae. International Microbiology : the Official Journal of the Spanish Society For Microbiology. 11: 41-8. PMID 18683631 DOI: 10.2436/20.1501.01.43  0.647
2007 Tamames J, Gil R, Latorre A, Peretó J, Silva FJ, Moya A. The frontier between cell and organelle: genome analysis of Candidatus Carsonella ruddii. Bmc Evolutionary Biology. 7: 181. PMID 17908294 DOI: 10.1186/1471-2148-7-181  0.69
2007 Gómez-Valero L, Rocha EP, Latorre A, Silva FJ. Reconstructing the ancestor of Mycobacterium leprae: the dynamics of gene loss and genome reduction. Genome Research. 17: 1178-85. PMID 17623808 DOI: 10.1101/Gr.6360207  0.664
2007 Gómez-Valero L, Silva FJ, Christophe Simon J, Latorre A. Genome reduction of the aphid endosymbiont Buchnera aphidicola in a recent evolutionary time scale. Gene. 389: 87-95. PMID 17098378 DOI: 10.1016/J.Gene.2006.10.001  0.596
2006 Silva FJ, Belda E, Talens SE. Differential annotation of tRNA genes with anticodon CAT in bacterial genomes. Nucleic Acids Research. 34: 6015-22. PMID 17071718 DOI: 10.1093/nar/gkl739  0.446
2006 Pérez-Brocal V, Gil R, Ramos S, Lamelas A, Postigo M, Michelena JM, Silva FJ, Moya A, Latorre A. A small microbial genome: the end of a long symbiotic relationship? Science (New York, N.Y.). 314: 312-3. PMID 17038625 DOI: 10.1126/Science.1130441  0.666
2006 Gil R, Sabater-Muñoz B, Perez-Brocal V, Silva FJ, Latorre A. Plasmids in the aphid endosymbiont Buchnera aphidicola with the smallest genomes. A puzzling evolutionary story. Gene. 370: 17-25. PMID 16413149 DOI: 10.1016/J.Gene.2005.10.043  0.787
2006 Gaudermann P, Vogl I, Zientz E, Silva FJ, Moya A, Gross R, Dandekar T. Analysis of and function predictions for previously conserved hypothetical or putative proteins in Blochmannia floridanus. Bmc Microbiology. 6: 1. PMID 16401340 DOI: 10.1186/1471-2180-6-1  0.339
2005 Schaber J, Rispe C, Wernegreen J, Buness A, Delmotte F, Silva FJ, Moya A. Gene expression levels influence amino acid usage and evolutionary rates in endosymbiotic bacteria Gene. 352: 109-117. PMID 15935576 DOI: 10.1016/J.Gene.2005.04.003  0.381
2005 Belda E, Moya A, Silva FJ. Genome rearrangement distances and gene order phylogeny in gamma-Proteobacteria. Molecular Biology and Evolution. 22: 1456-67. PMID 15772379 DOI: 10.1093/Molbev/Msi134  0.522
2004 Gil R, Silva FJ, Peretó J, Moya A. Determination of the core of a minimal bacterial gene set. Microbiology and Molecular Biology Reviews : Mmbr. 68: 518-37, table of con. PMID 15353568 DOI: 10.1128/Mmbr.68.3.518-537.2004  0.509
2004 Gómez-Valero L, Latorre A, Silva FJ. The evolutionary fate of nonfunctional DNA in the bacterial endosymbiont Buchnera aphidicola. Molecular Biology and Evolution. 21: 2172-81. PMID 15317875 DOI: 10.1093/Molbev/Msh232  0.615
2004 Sabater-Muñoz B, van Ham RC, Moya A, Silva FJ, Latorre A. Evolution of the leucine gene cluster in Buchnera aphidicola: insights from chromosomal versions of the cluster. Journal of Bacteriology. 186: 2646-54. PMID 15090505 DOI: 10.1128/Jb.186.9.2646-2654.2004  0.746
2003 Gil R, Silva FJ, Zientz E, Delmotte F, González-Candelas F, Latorre A, Rausell C, Kamerbeek J, Gadau J, Hölldobler B, van Ham RC, Gross R, Moya A. The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes. Proceedings of the National Academy of Sciences of the United States of America. 100: 9388-93. PMID 12886019 DOI: 10.1073/Pnas.1533499100  0.688
2003 Silva FJ, Latorre A, Moya A. Why are the genomes of endosymbiotic bacteria so stable? Trends in Genetics : Tig. 19: 176-80. PMID 12683967 DOI: 10.1016/S0168-9525(03)00041-6  0.673
2003 van Ham RC, Kamerbeek J, Palacios C, Rausell C, Abascal F, Bastolla U, Fernández JM, Jiménez L, Postigo M, Silva FJ, Tamames J, Viguera E, Latorre A, Valencia A, Morán F, et al. Reductive genome evolution in Buchnera aphidicola. Proceedings of the National Academy of Sciences of the United States of America. 100: 581-6. PMID 12522265 DOI: 10.1073/Pnas.0235981100  0.669
2002 Moya A, Latorre A, Sabater-Muñoz B, Silva FJ. Comparative molecular evolution of primary (Buchnera) and secondary symbionts of aphids based on two protein-coding genes. Journal of Molecular Evolution. 55: 127-37. PMID 12107590 DOI: 10.1007/S00239-001-2307-8  0.734
2002 Sabater-Muñoz B, Gómez-Valero L, van Ham RC, Silva FJ, Latorre A. Molecular characterization of the leucine cluster in Buchnera sp. strain PSY, a primary endosymbiont of the aphid Pemphigus spyrothecae. Applied and Environmental Microbiology. 68: 2572-5. PMID 11976137 DOI: 10.1128/Aem.68.5.2572-2575.2002  0.724
2002 Gil R, Sabater-Muñoz B, Latorre A, Silva FJ, Moya A. Extreme genome reduction in Buchnera spp.: toward the minimal genome needed for symbiotic life. Proceedings of the National Academy of Sciences of the United States of America. 99: 4454-8. PMID 11904373 DOI: 10.1073/Pnas.062067299  0.765
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