Daniel Herschlag
Affiliations: | Stanford University, Palo Alto, CA |
Area:
ribozymesWebsite:
http://cmgm.stanford.edu/biochem/herschlag/membersdanexpand.htmlGoogle:
"Daniel Herschlag"Mean distance: 7.48 | S | N | B | C | P |
Parents
Sign in to add mentor| William P. Jencks | grad student | 1988 | Brandeis | |
| (Mechanisms of phosphoryl transfer) | ||||
| Thomas R. Cech | post-doc | 1989-1992 | CU Boulder | |
Children
Sign in to add trainee| Florian Hollfelder | research assistant | 1994-1994 | Stanford Medical School |
| Jacob Parres-Gold | research assistant | 2020-2021 | Stanford |
| Geeta J. Narlikar | grad student | 1992-1998 | Stanford Medical School (Cell Biology Tree) |
| Patrick J. O'Brien | grad student | 2000 | Stanford |
| Shu-ou Shan | grad student | 2000 | Stanford |
| Matthew L. Peck | grad student | 2001 | Stanford |
| Laura E. Bartley | grad student | 2002 | Stanford |
| Katrin Karbstein | grad student | 2003 | Stanford |
| Ivana N. Hughes | grad student | 2005 | Stanford |
| Rhiju Das | grad student | 2001-2005 | Department of Biochemistry Stanford University School of Medicine |
| Daniel A. Kraut | grad student | 2006 | Stanford |
| Felix Muller-Plantiz | grad student | 2006 | Stanford |
| Jesse G. Zalatan | grad student | 2008 | Stanford |
| Paul A. Sigala | grad student | 2009 | Stanford |
| Jon Lorsch | post-doc | Stanford | |
| Marcello Forconi | post-doc | 2003-2010 | Stanford |
| Marcus Alexander | post-doc | 2009-2010 | Stanford (Computational Biology Tree) |
| Lauren Danielle Hagler | post-doc | 2020-2024 | Stanford Medical School |
BETA: Related publications
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Publications
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| Markin CJ, Mokhtari DA, Du S, et al. (2023) Decoupling of catalysis and transition state analog binding from mutations throughout a phosphatase revealed by high-throughput enzymology. Proceedings of the National Academy of Sciences of the United States of America. 120: e2219074120 |
| Ken ML, Roy R, Geng A, et al. (2023) RNA conformational propensities determine cellular activity. Nature |
| Shin JH, Bonilla SL, Denny SK, et al. (2023) Dissecting the energetic architecture within an RNA tertiary structural motif via high-throughput thermodynamic measurements. Proceedings of the National Academy of Sciences of the United States of America. 120: e2220485120 |
| Jarmoskaite I, AlSadhan I, Vaidyanathan PP, et al. (2020) How to measure and evaluate binding affinities. Elife. 9 |
| Zettl T, Shi X, Bonilla S, et al. (2020) The structural ensemble of a Holliday junction determined by X-ray scattering interference. Nucleic Acids Research |
| Gebala M, Herschlag D. (2019) Quantitative Studies of an RNA Duplex Electrostatics by Ion Counting. Biophysical Journal. 117: 1116-1124 |
| Yesselman JD, Eiler D, Carlson ED, et al. (2019) Computational design of three-dimensional RNA structure and function. Nature Nanotechnology |
| Yesselman JD, Denny SK, Bisaria N, et al. (2019) Sequence-dependent RNA helix conformational preferences predictably impact tertiary structure formation. Proceedings of the National Academy of Sciences of the United States of America |
| Gebala M, Johnson SL, Narlikar GJ, et al. (2019) Ion counting demonstrates a high electrostatic field generated by the nucleosome. Elife. 8 |
| Ganser LR, Kelly ML, Herschlag D, et al. (2019) The roles of structural dynamics in the cellular functions of RNAs. Nature Reviews. Molecular Cell Biology |