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Steven Salzberg

Affiliations: 
Computer Science Johns Hopkins University, Baltimore, MD 
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"Steven Salzberg"
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Parents

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Barbara J. Grosz grad student (Computer Science Tree)
 (Barbara Grosz was a Ph.D. thesis committee member for Steven Salzberg)
William Woods grad student 1989 Harvard

Children

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Sreerama K. Murthy grad student 1995 Johns Hopkins
John W. Sheppard grad student 1997 Johns Hopkins
Mihaela Pertea grad student 2001 Johns Hopkins
Jonathan Allen grad student 2006 Johns Hopkins
Adam Phillippy grad student 2010 University of Maryland
Michael Schatz grad student 2010 University of Maryland
Cole Trapnell grad student 2010 University of Maryland
Samuel Angiuoli grad student 2011 University of Maryland
David Kelley grad student 2011 University of Maryland
Ben Langmead grad student 2012 University of Maryland
Daehwan Kim grad student 2013 University of Maryland
Derrick Wood grad student 2014 University of Maryland
Martin Steinegger post-doc 2018- Johns Hopkins
Natalia Volfovsky post-doc 1999-2002 The Institute for Genomic Research
Carlton Kingsford post-doc 2005-2007 University of Maryland
Arthur Brady post-doc 2008-2011 University of Maryland
Todd Treangen post-doc 2010-2012 University of Maryland
Tanja Magoc post-doc 2010-2013 Johns Hopkins (Computer Science Tree)
Stefan Canzar post-doc 2012-2014 Johns Hopkins
Daehwan Kim post-doc 2013-2017 Johns Hopkins
Ruibang Laurent Luo post-doc 2016-2017 Johns Hopkins
Florian Breitwieser post-doc 2015-2019 Johns Hopkins
Maria Ermolaeva research scientist 1999-2004 The Institute for Genomic Research
Pawel Gajer research scientist 2000-2004 The Institute for Genomic Research
Mihai Pop research scientist 2005 The Institute for Genomic Research (Computer Science Tree)
Bill Majoros research scientist 2002-2005 The Institute for Genomic Research

Collaborators

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Kenneth Howard Fasman collaborator Johns Hopkins
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Publications

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Sommer MJ, Zimin AV, Salzberg SL. (2025) PSAURON: a tool for assessing protein annotation across a broad range of species. Nar Genomics and Bioinformatics. 7: lqae189
Ji HJ, Salzberg SL. (2024) Upstream open reading frames may contain hundreds of novel human exons. Plos Computational Biology. 20: e1012543
Chao KH, Mao A, Salzberg SL, et al. (2024) Splam: a deep-learning-based splice site predictor that improves spliced alignments. Genome Biology. 25: 243
Lu J, Rincon N, Wood DE, et al. (2024) Author Correction: Metagenome analysis using the Kraken software suite. Nature Protocols
Ge Y, Lu J, Puiu D, et al. (2024) Comprehensive analysis of microbial content in whole-genome sequencing samples from The Cancer Genome Atlas project. Biorxiv : the Preprint Server For Biology
Heinz JM, Lu J, Huebner LK, et al. (2024) Novel metagenomics analysis of stony coral tissue loss disease. G3 (Bethesda, Md.)
Shumate A, Salzberg S. (2024) LiftoffTools: a toolkit for comparing gene annotations mapped between genome assemblies. F1000research. 11: 1230
Sommer MJ, Zimin AV, Salzberg SL. (2024) PSAURON: a tool for assessing protein annotation across a broad range of species. Biorxiv : the Preprint Server For Biology
Chao KH, Heinz JM, Hoh C, et al. (2024) Combining DNA and protein alignments to improve genome annotation with LiftOn. Biorxiv : the Preprint Server For Biology
Hoh C, Salzberg SL. (2024) Discovering Intron Gain Events in Humans through Large-Scale Evolutionary Comparisons. Biorxiv : the Preprint Server For Biology
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