Jonathan Allen
Affiliations: | 2006 | Computer Science | Johns Hopkins University, Baltimore, MD |
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Publications
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Allen JP, Snitkin E, Pincus NB, et al. (2021) Forest and Trees: Exploring Bacterial Virulence with Genome-wide Association Studies and Machine Learning. Trends in Microbiology |
Pincus NB, Ozer EA, Allen JP, et al. (2020) A Genome-Based Model to Predict the Virulence of Pseudomonas aeruginosa Isolates. Mbio. 11 |
Allen JP, Ozer EA, Minasov G, et al. (2020) A comparative genomics approach identifies contact-dependent growth inhibition as a virulence determinant. Proceedings of the National Academy of Sciences of the United States of America |
Sichtig H, Minogue T, Yan Y, et al. (2019) FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science. Nature Communications. 10: 3313 |
Venkateswaran K, Checinska Sielaff A, Ratnayake S, et al. (2017) Draft Genome Sequences from a Novel Clade of Bacillus cereus Sensu Lato Strains, Isolated from the International Space Station. Genome Announcements. 5 |
Checinska Sielaff A, Singh NK, Allen JE, et al. (2016) Draft Genome Sequences of Biosafety Level 2 Opportunistic Pathogens Isolated from the Environmental Surfaces of the International Space Station. Genome Announcements. 4 |
Gardner SN, McLoughlin K, Be NA, et al. (2016) Characterization of Genetic Variability of Venezuelan Equine Encephalitis Viruses. Plos One. 11: e0152604 |
Gardner SN, Frey KG, Redden CL, et al. (2015) Targeted amplification for enhanced detection of biothreat agents by next-generation sequencing. Bmc Research Notes. 8: 682 |
Ames SK, Gardner SN, Marti JM, et al. (2015) Using populations of human and microbial genomes for organism detection in metagenomes. Genome Research. 25: 1056-67 |
Ozer EA, Allen JP, Hauser AR. (2014) Characterization of the core and accessory genomes of Pseudomonas aeruginosa using bioinformatic tools Spine and AGEnt. Bmc Genomics. 15: 737 |