Siavash Mirarab
Affiliations: | 2015- | Electrical and Computer Engineering | University of California, San Diego, La Jolla, CA |
Area:
PhylogeneticsWebsite:
http://eceweb.ucsd.edu/~smirarab/Google:
"Siavash Mirarab"Mean distance: (not calculated yet)
Parents
Sign in to add mentor| Tandy Jo Warnow | grad student | 2011-2015 | UT Austin (Computer Science Tree) |
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Publications
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| Jiang Y, McDonald D, Perry D, et al. (2024) Scaling DEPP phylogenetic placement to ultra-large reference trees: a tree-aware ensemble approach. Bioinformatics (Oxford, England) |
| Gupta A, Mirarab S, Turakhia Y. (2024) Accurate, scalable, and fully automated inference of species trees from raw genome assemblies using ROADIES. Biorxiv : the Preprint Server For Biology |
| Arasti S, Tabaghi P, Tabatabaee Y, et al. (2024) Branch Length Transforms using Optimal Tree Metric Matching. Biorxiv : the Preprint Server For Biology |
| Stiller J, Feng S, Chowdhury AA, et al. (2024) Complexity of avian evolution revealed by family-level genomes. Nature |
| Arasti S, Mirarab S. (2024) Median quartet tree search algorithms using optimal subtree prune and regraft. Algorithms For Molecular Biology : Amb. 19: 12 |
| Balaban M, Jiang Y, Zhu Q, et al. (2023) Generation of accurate, expandable phylogenomic trees with uDance. Nature Biotechnology |
| McDonald D, Jiang Y, Balaban M, et al. (2023) Greengenes2 unifies microbial data in a single reference tree. Nature Biotechnology |
| Tabatabaee Y, Zhang C, Warnow T, et al. (2023) Phylogenomic branch length estimation using quartets. Bioinformatics (Oxford, England). 39: i185-i193 |
| Zhang C, Bzikadze AV, Safonova Y, et al. (2022) A scalable model for simulating multi-round antibody evolution and benchmarking of clonal tree reconstruction methods. Frontiers in Immunology. 13: 1014439 |
| Rachtman E, Sarmashghi S, Bafna V, et al. (2022) Quantifying the uncertainty of assembly-free genome-wide distance estimates and phylogenetic relationships using subsampling. Cell Systems. 13: 817-829.e3 |