James J. Cai
Affiliations: | 2000-2002 | Microbiology | University of Hong Kong, Downingtown, Hong Kong Island, Hong Kong |
| 2006-2010 | Biology | Stanford University, Palo Alto, CA | |
| 2010- | VIBS | Texas A & M University, College Station, TX, United States |
Area:
Single-cell Biology, Machine Learning, Quantum ComputingWebsite:
https://cailab-tamu.github.io/Google:
"James Cai"Parents
Sign in to add mentor| Xuhua Xia | grad student | 2000-2002 | University of Hong Kong | |
| (Date approximate) | ||||
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Publications
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| Xu Q, Li G, Osorio D, et al. (2022) scInTime: A Computational Method Leveraging Single-Cell Trajectory and Gene Regulatory Networks to Identify Master Regulators of Cellular Differentiation. Genes. 13 |
| Pinson MR, Chung DD, Mahnke AH, et al. (2022) Gag-like proteins: Novel mediators of prenatal alcohol exposure in neural development. Alcoholism, Clinical and Experimental Research |
| Yang Y, Osorio D, Davidson LA, et al. (2021) Single-cell RNA Sequencing Reveals How the Aryl Hydrocarbon Receptor Shapes Cellular Differentiation Potency in the Mouse Colon. Cancer Prevention Research (Philadelphia, Pa.) |
| Osorio D, Kuijjer ML, Cai JJ. (2021) rPanglaoDB: an R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database. Bioinformatics (Oxford, England) |
| Osorio D, Zhong Y, Li G, et al. (2020) scTenifoldNet: A Machine Learning Workflow for Constructing and Comparing Transcriptome-wide Gene Regulatory Networks from Single-Cell Data. Patterns (New York, N.Y.). 1: 100139 |
| Kumar V, Ivens A, Goodall Z, et al. (2020) Site-specific and mRNA-specific control of accurate mRNA editing by a helicase complex in trypanosomes. Rna (New York, N.Y.) |
| Osorio D, Cai JJ. (2020) Systematic determination of the mitochondrial proportion in human and mice tissues for single-cell RNA sequencing data quality control. Bioinformatics (Oxford, England) |
| Eldridge R, Osorio D, Amstalden K, et al. (2020) Antecedent presentation of neurological phenotypes in the Collaborative Cross reveals four classes with complex sex-dependencies. Scientific Reports. 10: 7918 |
| Huang G, Osorio D, Guan J, et al. (2020) Overdispersed gene expression in schizophrenia. Npj Schizophrenia. 6: 9 |
| Osorio D, Yu X, Zhong Y, et al. (2019) Single-Cell Expression Variability Implies Cell Function. Cells. 9 |