| Year |
Citation |
Score |
| 2024 |
Hartley GA, Okhovat M, Hoyt SJ, Fuller E, Pauloski N, Alexandre N, Alexandrov I, Drennan R, Dubocanin D, Gilbert DM, Mao Y, McCann C, Neph S, Ryabov F, Sasaki T, ... ... Carbone L, et al. Centromeric transposable elements and epigenetic status drive karyotypic variation in the eastern hoolock gibbon. Biorxiv : the Preprint Server For Biology. PMID 39257810 DOI: 10.1101/2024.08.29.610280 |
0.303 |
|
| 2024 |
Yoo D, Rhie A, Hebbar P, Antonacci F, Logsdon GA, Solar SJ, Antipov D, Pickett BD, Safonova Y, Montinaro F, Luo Y, Malukiewicz J, Storer JM, Lin J, Sequeira AN, ... ... Carbone L, et al. Complete sequencing of ape genomes. Biorxiv : the Preprint Server For Biology. PMID 39131277 DOI: 10.1101/2024.07.31.605654 |
0.378 |
|
| 2024 |
Makova KD, Pickett BD, Harris RS, Hartley GA, Cechova M, Pal K, Nurk S, Yoo D, Li Q, Hebbar P, McGrath BC, Antonacci F, Aubel M, Biddanda A, Borchers M, ... ... Carbone L, et al. The complete sequence and comparative analysis of ape sex chromosomes. Nature. PMID 38811727 DOI: 10.1038/s41586-024-07473-2 |
0.309 |
|
| 2023 |
Mao Y, Harvey WT, Porubsky D, Munson KM, Hoekzema K, Lewis AP, Audano PA, Rozanski A, Yang X, Zhang S, Gordon DS, Wei X, Logsdon GA, Haukness M, Dishuck PC, ... ... Carbone L, et al. Structurally divergent and recurrently mutated regions of primate genomes. Biorxiv : the Preprint Server For Biology. PMID 36945442 DOI: 10.1101/2023.03.07.531415 |
0.305 |
|
| 2022 |
Brooks KE, Daughtry BL, Davis B, Yan MY, Fei SS, Shepherd S, Carbone L, Chavez SL. Molecular contribution to embryonic aneuploidy and karyotypic complexity in initial cleavage divisions of mammalian development. Development (Cambridge, England). PMID 35311995 DOI: 10.1242/dev.198341 |
0.732 |
|
| 2021 |
Rosenkrantz JL, Gaffney JE, Roberts VHJ, Carbone L, Chavez SL. Transcriptomic analysis of primate placentas and novel rhesus trophoblast cell lines informs investigations of human placentation. Bmc Biology. 19: 127. PMID 34154587 DOI: 10.1186/s12915-021-01056-7 |
0.748 |
|
| 2021 |
Rosenkrantz JL, Gaffney JE, Roberts VHJ, Carbone L, Chavez SL. Transcriptomic analysis of primate placentas and novel rhesus trophoblast cell lines informs investigations of human placentation. Bmc Biology. 19: 127. PMID 34154587 DOI: 10.1186/s12915-021-01056-7 |
0.748 |
|
| 2021 |
Hartley GA, Okhovat M, O'Neill RJ, Carbone L. Comparative analyses of gibbon centromeres reveal dynamic genus specific shifts in repeat composition. Molecular Biology and Evolution. PMID 33983366 DOI: 10.1093/molbev/msab148 |
0.32 |
|
| 2020 |
Okhovat M, Nevonen KA, Davis BA, Michener P, Ward S, Milhaven M, Harshman L, Sohota A, Fernandes JD, Salama SR, O'Neill RJ, Ahituv N, Veeramah KR, Carbone L. Co-option of the lineage-specific retrotransposon in the gibbon genome. Proceedings of the National Academy of Sciences of the United States of America. PMID 32690705 DOI: 10.1073/Pnas.2006038117 |
0.397 |
|
| 2019 |
Hardin A, Nevonen KA, Eckalbar WL, Carbone L, Ahituv N. Comparative genomic characterization of the multimammate mouse Mastomys coucha. Molecular Biology and Evolution. PMID 31424545 DOI: 10.1093/Molbev/Msz188 |
0.408 |
|
| 2019 |
Daughtry BL, Rosenkrantz JL, Lazar NH, Fei SS, Redmayne N, Torkenczy KA, Adey A, Yan M, Gao L, Park B, Nevonen KA, Carbone L, Chavez SL. Single-cell sequencing of primate preimplantation embryos reveals chromosome elimination via cellular fragmentation and blastomere exclusion. Genome Research. PMID 30683754 DOI: 10.1101/Gr.239830.118 |
0.757 |
|
| 2019 |
Brooks KE, Daughtry BL, Fei SS, Yan MY, Davis B, Carbone L, Chavez SL. 41 Delineating the molecular connections between mitotic aneuploidy, micronucleation, and cellular fragmentation in pre-implantation bovine embryos Reproduction, Fertility and Development. 31: 146. DOI: 10.1071/Rdv31N1Ab41 |
0.767 |
|
| 2018 |
Lazar NH, Nevonen KA, O'Connell B, McCann C, O'Neill RJ, Green RE, Meyer TJ, Okhovat M, Carbone L. Epigenetic maintenance of topological domains in the highly rearranged gibbon genome. Genome Research. PMID 29914971 DOI: 10.1101/Gr.233874.117 |
0.39 |
|
| 2017 |
Meyer TJ, Rosenkrantz JL, Carbone L, Chavez SL. Endogenous Retroviruses: With Us and against Us. Frontiers in Chemistry. 5: 23. PMID 28439515 DOI: 10.3389/Fchem.2017.00023 |
0.727 |
|
| 2017 |
Vitak SA, Torkenczy KA, Rosenkrantz JL, Fields AJ, Christiansen L, Wong MH, Carbone L, Steemers FJ, Adey A. Sequencing thousands of single-cell genomes with combinatorial indexing. Nature Methods. PMID 28135258 DOI: 10.1038/Nmeth.4154 |
0.758 |
|
| 2017 |
Albrecht C, Baker JC, Blundell C, Chavez SL, Carbone L, Chamley L, Hannibal RL, Illsley N, Kurre P, Laurent LC, McKenzie C, Morales-Prieto D, Pantham P, Paquette A, Powell K, et al. IFPA meeting 2016 workshop report I: Genomic communication, bioinformatics, trophoblast biology and transport systems. Placenta. PMID 28108031 DOI: 10.1016/J.Placenta.2017.01.103 |
0.661 |
|
| 2017 |
Rosenkrantz JL, Carbone L. Investigating somatic aneuploidy in the brain: why we need a new model. Chromosoma. 126: 337-350. PMID 27638401 DOI: 10.1007/S00412-016-0615-4 |
0.753 |
|
| 2017 |
Daughtry BL, Rosenkrantz JL, Lazar N, Redmayne N, Nevonen KA, Carbone L, Chavez SL. 6 ANEUPLOIDY TOLERANCE IN RHESUS MACAQUE PRE-IMPLANTATION EMBRYOS VIA MICRONUCLEI FORMATION, CELLULAR FRAGMENTATION, AND BLASTOMERE EXCLUSION Reproduction, Fertility and Development. 29: 110. DOI: 10.1071/Rdv29N1Ab6 |
0.759 |
|
| 2016 |
Meyer TJ, Held U, Nevonen KA, Klawitter S, Pirzer T, Carbone L, Schumann GG. The flow of the gibbon LAVA element is facilitated by the LINE-1 retrotransposition machinery. Genome Biology and Evolution. PMID 27635049 DOI: 10.1093/Gbe/Evw224 |
0.369 |
|
| 2016 |
Bimber BN, Raboin MJ, Letaw J, Nevonen KA, Spindel JE, McCouch SR, Cervera-Juanes R, Spindel E, Carbone L, Ferguson B, Vinson A. Whole-genome characterization in pedigreed non-human primates using genotyping-by-sequencing (GBS) and imputation. Bmc Genomics. 17: 676. PMID 27558348 DOI: 10.1186/S12864-016-2966-X |
0.366 |
|
| 2016 |
Wall JD, Schlebusch SA, Alberts SC, Cox LA, Snyder-Mackler N, Nevonen K, Carbone L, Tung J. Genome-wide ancestry and divergence patterns from low-coverage sequencing data reveal a complex history of admixture in wild baboons. Molecular Ecology. PMID 27145036 DOI: 10.1111/Mec.13684 |
0.39 |
|
| 2016 |
Eckalbar WL, Schlebusch SA, Mason MK, Gill Z, Parker AV, Booker BM, Nishizaki S, Muswamba-Nday C, Terhune E, Nevonen KA, Makki N, Friedrich T, VanderMeer JE, Pollard KS, Carbone L, et al. Transcriptomic and epigenomic characterization of the developing bat wing. Nature Genetics. PMID 27019111 DOI: 10.1038/Ng.3537 |
0.36 |
|
| 2016 |
Daughtry BL, Masterson KR, Metcalf ES, Battaglia D, Fei SS, Carbone L, Beck R, Cook N, Chavez SL. Combining Time-Lapse Imaging and Next Generation RNA-Sequencing to assess Equine Embryo Developmental Potential Journal of Equine Veterinary Science. 41: 80-81. DOI: 10.1016/J.Jevs.2016.04.081 |
0.671 |
|
| 2015 |
Carbone L, Chavez SL. Mammalian pre-implantation chromosomal instability: species comparison, evolutionary considerations, and pathological correlations. Systems Biology in Reproductive Medicine. 61: 321-35. PMID 26366555 DOI: 10.3109/19396368.2015.1073406 |
0.75 |
|
| 2015 |
Veeramah KR, Woerner AE, Johnstone L, Gut I, Gut M, Marques-Bonet T, Carbone L, Wall JD, Hammer MF. Examining phylogenetic relationships among gibbon genera using whole genome sequence data using an approximate bayesian computation approach. Genetics. 200: 295-308. PMID 25769979 DOI: 10.1534/Genetics.115.174425 |
0.406 |
|
| 2015 |
Macchia G, Nord KH, Zoli M, Purgato S, D'Addabbo P, Whelan CW, Carbone L, Perini G, Mertens F, Rocchi M, Storlazzi CT. Ring chromosomes, breakpoint clusters, and neocentromeres in sarcomas. Genes, Chromosomes & Cancer. 54: 156-67. PMID 25421174 DOI: 10.1002/Gcc.22228 |
0.423 |
|
| 2014 |
Lovell PV, Wirthlin M, Wilhelm L, Minx P, Lazar NH, Carbone L, Warren WC, Mello CV. Conserved syntenic clusters of protein coding genes are missing in birds. Genome Biology. 15: 565. PMID 25518852 DOI: 10.1186/S13059-014-0565-1 |
0.39 |
|
| 2014 |
Carbone L, Harris RA, Gnerre S, Veeramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, et al. Gibbon genome and the fast karyotype evolution of small apes. Nature. 513: 195-201. PMID 25209798 DOI: 10.1038/Nature13679 |
0.425 |
|
| 2014 |
Wacholder AC, Cox C, Meyer TJ, Ruggiero RP, Vemulapalli V, Damert A, Carbone L, Pollock DD. Inference of transposable element ancestry. Plos Genetics. 10: e1004482. PMID 25121584 DOI: 10.1371/Journal.Pgen.1004482 |
0.369 |
|
| 2014 |
L'Abbate A, Macchia G, D'Addabbo P, Lonoce A, Tolomeo D, Trombetta D, Kok K, Bartenhagen C, Whelan CW, Palumbo O, Severgnini M, Cifola I, Dugas M, Carella M, De Bellis G, ... ... Carbone L, et al. Genomic organization and evolution of double minutes/homogeneously staining regions with MYC amplification in human cancer. Nucleic Acids Research. 42: 9131-45. PMID 25034695 DOI: 10.1093/Nar/Gku590 |
0.448 |
|
| 2013 |
Wall JD, Kim SK, Luca F, Carbone L, Mootnick AR, de Jong PJ, Di Rienzo A. Incomplete lineage sorting is common in extant gibbon genera. Plos One. 8: e53682. PMID 23341974 DOI: 10.1371/Journal.Pone.0053682 |
0.326 |
|
| 2012 |
Capozzi O, Carbone L, Stanyon RR, Marra A, Yang F, Whelan CW, de Jong PJ, Rocchi M, Archidiacono N. A comprehensive molecular cytogenetic analysis of chromosome rearrangements in gibbons. Genome Research. 22: 2520-8. PMID 22892276 DOI: 10.1101/gr.138651.112 |
0.36 |
|
| 2012 |
Meyer TJ, McLain AT, Oldenburg JM, Faulk C, Bourgeois MG, Conlin EM, Mootnick AR, de Jong PJ, Roos C, Carbone L, Batzer MA. An Alu-based phylogeny of gibbons (hylobatidae). Molecular Biology and Evolution. 29: 3441-50. PMID 22683814 DOI: 10.1093/Molbev/Mss149 |
0.329 |
|
| 2012 |
Carbone L, Harris RA, Mootnick AR, Milosavljevic A, Martin DI, Rocchi M, Capozzi O, Archidiacono N, Konkel MK, Walker JA, Batzer MA, de Jong PJ. Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons. Genome Biology and Evolution. 4: 648-58. PMID 22593550 DOI: 10.1093/Gbe/Evs048 |
0.397 |
|
| 2011 |
Hampton OA, Koriabine M, Miller CA, Coarfa C, Li J, Den Hollander P, Schoenherr C, Carbone L, Nefedov M, Ten Hallers BF, Lee AV, De Jong PJ, Milosavljevic A. Long-range massively parallel mate pair sequencing detects distinct mutations and similar patterns of structural mutability in two breast cancer cell lines. Cancer Genetics. 204: 447-57. PMID 21962895 DOI: 10.1016/J.Cancergen.2011.07.009 |
0.414 |
|
| 2011 |
Nefedov M, Carbone L, Field M, Schein J, de Jong PJ. Isolation of specific clones from nonarrayed BAC libraries through homologous recombination. Journal of Biomedicine & Biotechnology. 2011: 560124. PMID 20981149 DOI: 10.1155/2011/560124 |
0.327 |
|
| 2010 |
Capra JA, Carbone L, Riesenfeld SJ, Wall JD. Genomics through the lens of next-generation sequencing. Genome Biology. 11: 306. PMID 20587080 DOI: 10.1186/Gb-2010-11-6-306 |
0.354 |
|
| 2009 |
Carbone L, Harris RA, Vessere GM, Mootnick AR, Humphray S, Rogers J, Kim SK, Wall JD, Martin D, Jurka J, Milosavljevic A, de Jong PJ. Evolutionary breakpoints in the gibbon suggest association between cytosine methylation and karyotype evolution. Plos Genetics. 5: e1000538. PMID 19557196 DOI: 10.1371/Journal.Pgen.1000538 |
0.452 |
|
| 2009 |
Carbone L, Mootnick AR, Nadler T, Moisson P, Ryder O, Roos C, de Jong PJ. A chromosomal inversion unique to the northern white-cheeked gibbon. Plos One. 4: e4999. PMID 19319194 DOI: 10.1371/journal.pone.0004999 |
0.309 |
|
| 2009 |
Carbone L, D'addabbo P, Cardone MF, Teti MG, Misceo D, Vessere GM, de Jong PJ, Rocchi M. A satellite-like sequence, representing a "clone gap" in the human genome, was likely involved in the seeding of a novel centromere in macaque. Chromosoma. 118: 269-77. PMID 19048265 DOI: 10.1007/S00412-008-0196-Y |
0.461 |
|
| 2006 |
Carbone L, Vessere GM, ten Hallers BF, Zhu B, Osoegawa K, Mootnick A, Kofler A, Wienberg J, Rogers J, Humphray S, Scott C, Harris RA, Milosavljevic A, de Jong PJ. A high-resolution map of synteny disruptions in gibbon and human genomes. Plos Genetics. 2: e223. PMID 17196042 DOI: 10.1371/journal.pgen.0020223 |
0.368 |
|
| 2006 |
Cardone MF, Alonso A, Pazienza M, Ventura M, Montemurro G, Carbone L, de Jong PJ, Stanyon R, D'Addabbo P, Archidiacono N, She X, Eichler EE, Warburton PE, Rocchi M. Independent centromere formation in a capricious, gene-free domain of chromosome 13q21 in Old World monkeys and pigs. Genome Biology. 7: R91. PMID 17040560 DOI: 10.1186/Gb-2006-7-10-R91 |
0.318 |
|
| 2005 |
Misceo D, Cardone MF, Carbone L, D'Addabbo P, de Jong PJ, Rocchi M, Archidiacono N. Evolutionary history of chromosome 20. Molecular Biology and Evolution. 22: 360-6. PMID 15496555 DOI: 10.1093/Molbev/Msi021 |
0.467 |
|
| 2004 |
Ventura M, Weigl S, Carbone L, Cardone MF, Misceo D, Teti M, D'Addabbo P, Wandall A, Björck E, de Jong PJ, She X, Eichler EE, Archidiacono N, Rocchi M. Recurrent sites for new centromere seeding. Genome Research. 14: 1696-703. PMID 15342555 DOI: 10.1101/Gr.2608804 |
0.427 |
|
| 2003 |
Locke DP, Segraves R, Carbone L, Archidiacono N, Albertson DG, Pinkel D, Eichler EE. Large-scale variation among human and great ape genomes determined by array comparative genomic hybridization. Genome Research. 13: 347-57. PMID 12618365 DOI: 10.1101/Gr.1003303 |
0.336 |
|
| 2002 |
Carbone L, Ventura M, Tempesta S, Rocchi M, Archidiacono N. Evolutionary history of chromosome 10 in primates Chromosoma. 111: 267-272. PMID 12424526 DOI: 10.1007/S00412-002-0205-5 |
0.373 |
|
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