Ipek Oguz, Ph.D. - Publications

2009 Computer Science University of North Carolina, Chapel Hill, Chapel Hill, NC 
Medical Image Analysis

37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Yushkevich PA, Pashchinskiy A, Oguz I, Mohan S, Schmitt JE, Stein JM, Zukić D, Vicory J, McCormick M, Yushkevich N, Schwartz N, Gao Y, Gerig G. User-Guided Segmentation of Multi-modality Medical Imaging Datasets with ITK-SNAP. Neuroinformatics. PMID 29946897 DOI: 10.1007/s12021-018-9385-x  0.36
2016 Lee J, Kim SH, Oguz I, Styner M. Enhanced Cortical Thickness Measurements for Rodent Brains via Lagrangian-based RK4 Streamline Computation. Proceedings of Spie--the International Society For Optical Engineering. 9784. PMID 27065047 DOI: 10.1117/12.2216420  0.6
2015 Oguz I, Cates J, Datar M, Paniagua B, Fletcher T, Vachet C, Styner M, Whitaker R. Entropy-based particle correspondence for shape populations. International Journal of Computer Assisted Radiology and Surgery. PMID 26646417 DOI: 10.1007/s11548-015-1319-6  0.6
2015 Oguz I, Styner M, Sanchez M, Shi Y, Sonka M. LOGISMOS-B for Primates: Primate Cortical Surface Reconstruction and Thickness Measurement. Proceedings of Spie--the International Society For Optical Engineering. 9413. PMID 26028802 DOI: 10.1117/12.2082327  0.6
2015 McMurray MS, Oguz I, Rumple AM, Paniagua B, Styner MA, Johns JM. Effects of prenatal cocaine exposure on early postnatal rodent brain structure and diffusion properties. Neurotoxicology and Teratology. 47: 80-8. PMID 25459688 DOI: 10.1016/j.ntt.2014.11.007  0.6
2014 Oguz I, Sonka M. Robust cortical thickness measurement with LOGISMOS-B. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 17: 722-30. PMID 25333183 DOI: 10.1007/978-3-319-10404-1_90  0.6
2014 Oguz I, Sonka M. LOGISMOS-B: layered optimal graph image segmentation of multiple objects and surfaces for the brain. Ieee Transactions On Medical Imaging. 33: 1220-35. PMID 24760901 DOI: 10.1109/TMI.2014.2304499  0.6
2014 Oguz I, Farzinfar M, Matsui J, Budin F, Liu Z, Gerig G, Johnson HJ, Styner M. DTIPrep: quality control of diffusion-weighted images. Frontiers in Neuroinformatics. 8: 4. PMID 24523693 DOI: 10.3389/fninf.2014.00004  0.6
2014 Coleman LG, Liu W, Oguz I, Styner M, Crews FT. Adolescent binge ethanol treatment alters adult brain regional volumes, cortical extracellular matrix protein and behavioral flexibility. Pharmacology, Biochemistry, and Behavior. 116: 142-51. PMID 24275185 DOI: 10.1016/j.pbb.2013.11.021  0.6
2014 Oguz I, Zhang H, Rumple A, Sonka M. RATS: Rapid Automatic Tissue Segmentation in rodent brain MRI. Journal of Neuroscience Methods. 221: 175-82. PMID 24140478 DOI: 10.1016/j.jneumeth.2013.09.021  0.6
2014 Skwerer S, Bullitt E, Huckemann S, Miller E, Oguz I, Owen M, Patrangenaru V, Provan S, Marron JS. Tree-Oriented Analysis of Brain Artery Structure Journal of Mathematical Imaging and Vision. 1-18. DOI: 10.1007/s10851-013-0473-0  0.6
2013 Lee J, Lyu I, OÄŸuz I, Styner MA. Particle-guided image registration. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 16: 203-10. PMID 24505762 DOI: 10.1007/978-3-642-40760-4_26  0.6
2013 Grauer M, Reynolds P, Hoogstoel M, Budin F, Styner MA, Oguz I. A midas plugin to enable construction of reproducible web-based image processing pipelines. Frontiers in Neuroinformatics. 7: 46. PMID 24416016 DOI: 10.3389/fninf.2013.00046  0.6
2013 Oguz I, Yaxley R, Budin F, Hoogstoel M, Lee J, Maltbie E, Liu W, Crews FT. Comparison of magnetic resonance imaging in live vs. post mortem rat brains. Plos One. 8: e71027. PMID 23967148 DOI: 10.1371/journal.pone.0071027  0.6
2013 Budin F, Hoogstoel M, Reynolds P, Grauer M, O'Leary-Moore SK, Oguz I. Fully automated rodent brain MR image processing pipeline on a Midas server: from acquired images to region-based statistics. Frontiers in Neuroinformatics. 7: 15. PMID 23964234 DOI: 10.3389/fninf.2013.00015  0.36
2013 Parnell SE, Holloway HT, O'Leary-Moore SK, Dehart DB, Paniaqua B, Oguz I, Budin F, Styner MA, Johnson GA, Sulik KK. Magnetic resonance microscopy-based analyses of the neuroanatomical effects of gestational day 9 ethanol exposure in mice. Neurotoxicology and Teratology. 39: 77-83. PMID 23911654 DOI: 10.1016/j.ntt.2013.07.009  0.6
2013 Rumple A, McMurray M, Johns J, Lauder J, Makam P, Radcliffe M, Oguz I. 3-dimensional diffusion tensor imaging (DTI) atlas of the rat brain. Plos One. 8: e67334. PMID 23861758 DOI: 10.1371/journal.pone.0067334  0.6
2013 Farzinfar M, Li Y, Verde AR, Oguz I, Gerig G, Styner MA. DTI Quality Control Assessment via Error Estimation From Monte Carlo Simulations. Proceedings of Spie--the International Society For Optical Engineering. 8669: 1667549. PMID 23833547 DOI: 10.1117/12.2006925  0.6
2013 Farzinfar M, Oguz I, Smith RG, Verde AR, Dietrich C, Gupta A, Escolar ML, Piven J, Pujol S, Vachet C, Gouttard S, Gerig G, Dager S, McKinstry RC, Paterson S, et al. Diffusion imaging quality control via entropy of principal direction distribution. Neuroimage. 82: 1-12. PMID 23684874 DOI: 10.1016/j.neuroimage.2013.05.022  0.6
2013 Ehlers CL, Oguz I, Budin F, Wills DN, Crews FT. Peri-adolescent ethanol vapor exposure produces reductions in hippocampal volume that are correlated with deficits in prepulse inhibition of the startle. Alcoholism, Clinical and Experimental Research. 37: 1466-75. PMID 23578102 DOI: 10.1111/acer.12125  0.6
2012 Lipinski RJ, Hammond P, O'Leary-Moore SK, Ament JJ, Pecevich SJ, Jiang Y, Budin F, Parnell SE, Suttie M, Godin EA, Everson JL, Dehart DB, Oguz I, Holloway HT, Styner MA, et al. Ethanol-induced face-brain dysmorphology patterns are correlative and exposure-stage dependent. Plos One. 7: e43067. PMID 22937012 DOI: 10.1371/journal.pone.0043067  0.6
2012 Oguz I, McMurray MS, Styner M, Johns JM. The translational role of diffusion tensor image analysis in animal models of developmental pathologies. Developmental Neuroscience. 34: 5-19. PMID 22627095 DOI: 10.1159/000336825  0.6
2012 Coleman LG, Oguz I, Lee J, Styner M, Crews FT. Postnatal day 7 ethanol treatment causes persistent reductions in adult mouse brain volume and cortical neurons with sex specific effects on neurogenesis. Alcohol (Fayetteville, N.Y.). 46: 603-12. PMID 22572057 DOI: 10.1016/j.alcohol.2012.01.003  0.6
2011 Paniagua B, Alhadidi A, Cevidanes L, Styner M, Oguz I. MANDIBULAR ASYMMETRY CHARACTERIZATION USING GENERALIZED TENSOR-BASED MORPHOMETRY. Proceedings / Ieee International Symposium On Biomedical Imaging: From Nano to Macro. Ieee International Symposium On Biomedical Imaging. 2011: 1175-1178. PMID 24443671 DOI: 10.1109/ISBI.2011.5872611  0.4
2011 Boucharin A, Oguz I, Vachet C, Shi Y, Sanchez M, Styner M. Efficient, Graph-based White Matter Connectivity from Orientation Distribution Functions via Multi-directional Graph Propagation. Proceedings of Spie--the International Society For Optical Engineering. 7962: 79620S. PMID 23066452 DOI: 10.1117/12.878291  0.6
2011 Cai Y, McMurray MS, Oguz I, Yuan H, Styner MA, Lin W, Johns JM, An H. Use of High Resolution 3D Diffusion Tensor Imaging to Study Brain White Matter Development in Live Neonatal Rats. Frontiers in Psychiatry. 2: 54. PMID 22013426 DOI: 10.3389/fpsyt.2011.00054  0.6
2011 Gerig G, Oguz I, Gouttard S, Lee J, An H, Lin W, McMurray M, Grewen K, Johns J, Styner MA. Synergy of image analysis for animal and human neuroimaging supports translational research on drug abuse. Frontiers in Psychiatry. 2: 53. PMID 22013425 DOI: 10.3389/fpsyt.2011.00053  0.6
2011 Lee J, Ehlers C, Crews F, Niethammer M, Budin F, Paniagua B, Sulik K, Johns J, Styner M, Oguz I. Automatic cortical thickness analysis on rodent brain. Proceedings of Spie--the International Society For Optical Engineering. 7962: 7962481-79624811. PMID 21909228 DOI: 10.1117/12.878305  0.6
2011 Oguz I, Lee J, Budin F, Rumple A, McMurray M, Ehlers C, Crews F, Johns J, Styner M. Automatic Skull-stripping of Rat MRI/DTI Scans and Atlas Building. Proceedings of Spie--the International Society For Optical Engineering. 7962: 7962251-7962257. PMID 21909227 DOI: 10.1117/12.878405  0.6
2011 Sen B, Guilluy C, Xie Z, Case N, Styner M, Thomas J, Oguz I, Rubin C, Burridge K, Rubin J. Mechanically induced focal adhesion assembly amplifies anti-adipogenic pathways in mesenchymal stem cells. Stem Cells (Dayton, Ohio). 29: 1829-36. PMID 21898699 DOI: 10.1002/stem.732  0.6
2011 Paniagua B, Ehlers C, Crews F, Budin F, Larson G, Styner M, Oguz I. Using tensor-based morphometry to detect structural brain abnormalities in rats with adolescent intermittent alcohol exposure Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7965. DOI: 10.1117/12.878389  0.6
2011 Vachet C, Cody Hazlett H, Niethammer M, Oguz I, Cates J, Whitaker R, Piven J, Styner M. Group-wise automatic mesh-based analysis of cortical thickness Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7962. DOI: 10.1117/12.878300  0.6
2009 Oguz I, Niethammer M, Cates J, Whitaker R, Fletcher T, Vachet C, Styner M. Cortical correspondence with probabilistic fiber connectivity. Information Processing in Medical Imaging : Proceedings of the ... Conference. 21: 651-63. PMID 19694301 DOI: 10.1007/978-3-642-02498-6_54  0.6
2008 Styner M, Oguz I, Heimann T, Gerig G. Minimum description length with local geometry 2008 5th Ieee International Symposium On Biomedical Imaging: From Nano to Macro, Proceedings, Isbi. 1283-1286. DOI: 10.1109/ISBI.2008.4541238  0.36
2007 Styner M, Oguz I, Xu S, Pantazis D, Gerig G. Statistical group differences in anatomical shape analysis H using hotelling T2 metric Progress in Biomedical Optics and Imaging - Proceedings of Spie. 6512. DOI: 10.1117/12.708467  0.6
2006 Styner M, Oguz I, Xu S, Brechbühler C, Pantazis D, Levitt JJ, Shenton ME, Gerig G. Framework for the Statistical Shape Analysis of Brain Structures using SPHARM-PDM. The Insight Journal. 242-250. PMID 21941375  0.36
2005 Styner MA, Oguz I, Smith RG, Cascio C, Jomier M. Corpus callosum subdivision based on a probabilistic model of inter-hemispheric connectivity. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 8: 765-72. PMID 16686029 DOI: 10.1007/11566489_94  0.6
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