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Alan S. Waggoner - Publications

Biological Sciences Carnegie Mellon University, Pittsburgh, PA 
Fluorescent Probes

78 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Shelke SA, Shao Y, Laski A, Koirala D, Weissman BP, Fuller JR, Tan X, Constantin TP, Waggoner AS, Bruchez MP, Armitage BA, Piccirilli JA. Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif. Nature Communications. 9: 4542. PMID 30382099 DOI: 10.1038/s41467-018-06942-3  0.307
2018 Stensrud KF, Zanotti KJ, Waggoner AS, Armitage BA. Spectral Properties of Fluorogenic Thiophene-Derived Triarylmethane Dyes. Photochemistry and Photobiology. PMID 30339278 DOI: 10.1111/Php.13037  0.398
2017 Lorenz-Guertin JM, Wilcox MR, Zhang M, Larsen MB, Pilli J, Schmidt BF, Bruchez MP, Johnson JW, Waggoner AS, Watkins SC, Jacob TC. A versatile optical tool for studying synaptic GABAA receptor trafficking. Journal of Cell Science. PMID 29025969 DOI: 10.1242/Jcs.205286  0.332
2017 Tan X, Constantin TP, Sloane KL, Waggoner AS, Bruchez MP, Armitage BA. Fluoromodules Consisting of a Promiscuous RNA Aptamer and Red or Blue Fluorogenic Cyanine Dyes: Selection, Characterization, and Bioimaging. Journal of the American Chemical Society. PMID 28644615 DOI: 10.1021/Jacs.7B04211  0.39
2017 Snyder JC, Rochelle LK, Ray C, Pack TF, Bock CB, Lubkov V, Lyerly HK, Waggoner AS, Barak LS, Caron MG. Inhibiting clathrin-mediated endocytosis of the leucine-rich G protein-coupled Receptor-5 diminishes cell fitness. The Journal of Biological Chemistry. PMID 28275053 DOI: 10.1074/Jbc.M116.756635  0.334
2015 Wu Y, Stauffer SR, Stanfield RL, Tapia PH, Ursu O, Fisher GW, Szent-Gyorgyi C, Evangelisti A, Waller A, Strouse JJ, Carter MB, Bologa C, Gouveia K, Poslusney M, Waggoner AS, et al. Discovery of Small-Molecule Nonfluorescent Inhibitors of Fluorogen-Fluorogen Activating Protein Binding Pair. Journal of Biomolecular Screening. PMID 26442911 DOI: 10.1177/1087057115609145  0.377
2015 Zhang M, Chakraborty SK, Sampath P, Rojas JJ, Hou W, Saurabh S, Thorne SH, Bruchez MP, Waggoner AS. Fluoromodule-based reporter/probes designed for in vivo fluorescence imaging. The Journal of Clinical Investigation. PMID 26348895 DOI: 10.1172/Jci81086  0.448
2015 Magenau AJ, Saurabh S, Andreko SK, Telmer CA, Schmidt BF, Waggoner AS, Bruchez MP. Genetically targeted fluorogenic macromolecules for subcellular imaging and cellular perturbation. Biomaterials. 66: 1-8. PMID 26183934 DOI: 10.1016/J.Biomaterials.2015.07.002  0.304
2015 Rastede EE, Tanha M, Yaron D, Watkins SC, Waggoner AS, Armitage BA. Spectral fine tuning of cyanine dyes: electron donor-acceptor substituted analogues of thiazole orange. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 14: 1703-12. PMID 26171668 DOI: 10.1039/C5Pp00117J  0.34
2015 Pham HH, Szent-Gyorgyi C, Brotherton WL, Schmidt BF, Zanotti KJ, Waggoner AS, Armitage BA. Bichromophoric dyes for wavelength shifting of dye-protein fluoromodules. Organic & Biomolecular Chemistry. 13: 3699-710. PMID 25679477 DOI: 10.1039/C4Ob02522A  0.383
2014 Saunders MJ, Block E, Sorkin A, Waggoner AS, Bruchez MP. A bifunctional converter: fluorescein quenching scFv/fluorogen activating protein for photostability and improved signal to noise in fluorescence experiments. Bioconjugate Chemistry. 25: 1556-64. PMID 25072845 DOI: 10.1021/Bc500273N  0.42
2014 Fisher GW, Fuhrman MH, Adler SA, Szent-Gyorgyi C, Waggoner AS, Jarvik JW. Self-Checking Cell-Based Assays for GPCR Desensitization and Resensitization. Journal of Biomolecular Screening. 19: 1220-1226. PMID 24820110 DOI: 10.1177/1087057114534299  0.315
2013 Patrick MJ, Janjic JM, Teng H, O'Hear MR, Brown CW, Stokum JA, Schmidt BF, Ahrens ET, Waggoner AS. Intracellular pH measurements using perfluorocarbon nanoemulsions. Journal of the American Chemical Society. 135: 18445-57. PMID 24266634 DOI: 10.1021/Ja407573M  0.353
2013 Szent-Gyorgyi C, Stanfield RL, Andreko S, Dempsey A, Ahmed M, Capek S, Waggoner AS, Wilson IA, Bruchez MP. Malachite green mediates homodimerization of antibody VL domains to form a fluorescent ternary complex with singular symmetric interfaces. Journal of Molecular Biology. 425: 4595-613. PMID 23978698 DOI: 10.1016/J.Jmb.2013.08.014  0.307
2013 Saunders MJ, Liu W, Szent-Gyorgyi C, Wen Y, Drennen Z, Waggoner AS, Meng WS. Engineering fluorogen activating proteins into self-assembling materials. Bioconjugate Chemistry. 24: 803-10. PMID 23573960 DOI: 10.1021/bc300613h  0.361
2013 Wu Y, Tapia PH, Fisher GW, Waggoner AS, Jarvik J, Sklar LA. High-throughput flow cytometry compatible biosensor based on fluorogen activating protein technology. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 83: 220-6. PMID 23303704 DOI: 10.1002/Cyto.A.22242  0.332
2013 Shank NI, Pham HH, Waggoner AS, Armitage BA. Twisted cyanines: a non-planar fluorogenic dye with superior photostability and its use in a protein-based fluoromodule. Journal of the American Chemical Society. 135: 242-51. PMID 23252842 DOI: 10.1021/Ja308629W  0.41
2013 Waggoner A, Moerner WE, Bruchez M. Fluorescent Probes and Digital Imaging: Where We Are and Where We're Going Science. 340: 1247-1247. DOI: 10.1126/Science.340.6137.1247-C  0.43
2012 Yushchenko DA, Zhang M, Yan Q, Waggoner AS, Bruchez MP. Genetically targetable and color-switching fluorescent probe. Chembiochem : a European Journal of Chemical Biology. 13: 1564-8. PMID 22777954 DOI: 10.1002/Cbic.201200334  0.413
2012 Senutovitch N, Stanfield RL, Bhattacharyya S, Rule GS, Wilson IA, Armitage BA, Waggoner AS, Berget PB. A variable light domain fluorogen activating protein homodimerizes to activate dimethylindole red. Biochemistry. 51: 2471-85. PMID 22390683 DOI: 10.1021/Bi201422G  0.356
2012 Saunders MJ, Szent-Gyorgyi C, Fisher GW, Jarvik JW, Bruchez MP, Waggoner AS. Fluorogen activating proteins in flow cytometry for the study of surface molecules and receptors. Methods (San Diego, Calif.). 57: 308-17. PMID 22366230 DOI: 10.1016/J.Ymeth.2012.02.003  0.43
2011 Zanotti KJ, Silva GL, Creeger Y, Robertson KL, Waggoner AS, Berget PB, Armitage BA. Blue fluorescent dye-protein complexes based on fluorogenic cyanine dyes and single chain antibody fragments. Organic & Biomolecular Chemistry. 9: 1012-20. PMID 21180706 DOI: 10.1039/C0Ob00444H  0.464
2011 Waggoner A. A New Class of Fluorescent Biosensors for Regulatory Pathways in Cells Biophysical Journal. 100: 373a. DOI: 10.1016/J.BPJ.2010.12.2220  0.416
2010 Fisher GW, Adler SA, Fuhrman MH, Waggoner AS, Bruchez MP, Jarvik JW. Detection and quantification of beta2AR internalization in living cells using FAP-based biosensor technology. Journal of Biomolecular Screening. 15: 703-9. PMID 20488980 DOI: 10.1177/1087057110370892  0.374
2009 Fitzpatrick JA, Yan Q, Sieber JJ, Dyba M, Schwarz U, Szent-Gyorgyi C, Woolford CA, Berget PB, Waggoner AS, Bruchez MP. STED nanoscopy in living cells using Fluorogen Activating Proteins. Bioconjugate Chemistry. 20: 1843-1847. PMID 20976031 DOI: 10.1021/Bc900249E  0.355
2009 Ballou B, Ernst LA, Andreko S, Fitzpatrick JA, Lagerholm BC, Waggoner AS, Bruchez MP. Imaging vasculature and lymphatic flow in mice using quantum dots. Methods in Molecular Biology (Clifton, N.J.). 574: 63-74. PMID 19685300 DOI: 10.1007/978-1-60327-321-3_6  0.301
2009 Fitzpatrick JA, Andreko SK, Ernst LA, Waggoner AS, Ballou B, Bruchez MP. Long-term persistence and spectral blue shifting of quantum dots in vivo. Nano Letters. 9: 2736-41. PMID 19518087 DOI: 10.1021/Nl901534Q  0.349
2008 Szent-Gyorgyi C, Schmidt BF, Schmidt BA, Creeger Y, Fisher GW, Zakel KL, Adler S, Fitzpatrick JA, Woolford CA, Yan Q, Vasilev KV, Berget PB, Bruchez MP, Jarvik JW, Waggoner A. Fluorogen-activating single-chain antibodies for imaging cell surface proteins. Nature Biotechnology. 26: 235-40. PMID 18157118 DOI: 10.1038/Nbt1368  0.455
2008 Weinstein S, Pane D, Ernst LA, Warren-Rhodes K, Dohm JM, Hock AN, Piatek JL, Emani F, Lanni F, Wagner M, Fisher GW, Minkley E, Dansey LE, Smith T, Grin EA, ... ... Waggoner AS, et al. Application of pulsed-excitation flourescence imager for daylight detection of sparse life in tests in the Atacama Desert Journal of Geophysical Research: Biogeosciences. 113. DOI: 10.1029/2006Jg000319  0.423
2007 Patrick MJ, Ernst LA, Waggoner AS, Thai D, Tai D, Salama G. Enhanced aqueous solubility of long wavelength voltage-sensitive dyes by covalent attachment of polyethylene glycol. Organic & Biomolecular Chemistry. 5: 3347-53. PMID 17912389 DOI: 10.1039/B711438A  0.37
2007 Chakraborty SK, Fitzpatrick JA, Phillippi JA, Andreko S, Waggoner AS, Bruchez MP, Ballou B. Cholera toxin B conjugated quantum dots for live cell labeling. Nano Letters. 7: 2618-26. PMID 17663586 DOI: 10.1021/Nl0709930  0.335
2007 Lanni F, Pane DA, Weinstein SJ, Waggoner AS. Compact flashlamp-based fluorescence imager for use under ambient-light conditions. The Review of Scientific Instruments. 78: 033702. PMID 17411186 DOI: 10.1063/1.2669831  0.365
2007 Smith JD, Fisher GW, Waggoner AS, Campbell PG. The use of quantum dots for analysis of chick CAM vasculature. Microvascular Research. 73: 75-83. PMID 17070560 DOI: 10.1016/J.Mvr.2006.09.003  0.406
2007 Giuliano KA, Taylor DL, Waggoner AS. Reagents to measure and manipulate cell functions. Methods in Molecular Biology (Clifton, N.J.). 356: 141-63. PMID 16988401 DOI: 10.1385/1-59745-217-3:141  0.343
2006 Waggoner A. Fluorescent labels for proteomics and genomics Current Opinion in Chemical Biology. 10: 62-66. PMID 16418012 DOI: 10.1016/j.cbpa.2006.01.005  0.435
2006 Tsien RY, Ernst L, Waggoner A. Fluorophores for confocal microscopy: Photophysics and photochemistry Handbook of Biological Confocal Microscopy: Third Edition. 338-352. DOI: 10.1007/978-0-387-45524-2_16  0.503
2005 Salama G, Choi BR, Azour G, Lavasani M, Tumbev V, Salzberg BM, Patrick MJ, Ernst LA, Waggoner AS. Properties of new, long-wavelength, voltage-sensitive dyes in the heart. The Journal of Membrane Biology. 208: 125-40. PMID 16645742 DOI: 10.1007/S00232-005-0826-8  0.363
2005 Ballou B, Ernst LA, Waggoner AS. Fluorescence imaging of tumors in vivo. Current Medicinal Chemistry. 12: 795-805. PMID 15853712 DOI: 10.2174/0929867053507324  0.377
2004 Renikuntla BR, Rose HC, Eldo J, Waggoner AS, Armitage BA. Improved photostability and fluorescence properties through polyfluorination of a cyanine dye. Organic Letters. 6: 909-12. PMID 15012062 DOI: 10.1021/Ol036081W  0.427
2004 Ballou B, Lagerholm BC, Ernst LA, Bruchez MP, Waggoner AS. Noninvasive imaging of quantum dots in mice. Bioconjugate Chemistry. 15: 79-86. PMID 14733586 DOI: 10.1021/Bc034153Y  0.312
2004 Lagerholm BC, Wang M, Ernst LA, Ly DH, Liu H, Bruchez MP, Waggoner AS. Multicolor coding of cells with cationic peptide coated quantum dots Nano Letters. 4: 2019-2022. DOI: 10.1021/nl049295v  0.322
2001 Waggoner AS, Wachman ES, Farkas DL. Optical filtering systems for wavelength selection in light microscopy. Current Protocols in Cytometry / Editorial Board, J. Paul Robinson, Managing Editor ... [Et Al.]. Unit 2.4. PMID 18770698 DOI: 10.1002/0471142956.cy0204s15  0.356
2001 Waggoner A. Optical filter sets for multiparameter flow cytometry Current Protocols in Cytometry / Editorial Board, J. Paul Robinson, Managing Editor ... [Et Al.]. Unit 1.5. PMID 18770669 DOI: 10.1002/0471142956.Cy0105S00  0.301
1997 Zhu Z, Waggoner AS. Molecular mechanism controlling the incorporation of fluorescent nucleotides into DNA by PCR. Cytometry. 28: 206-11. PMID 9222105 DOI: 10.1002/(SICI)1097-0320(19970701)28:3<206::AID-CYTO4>3.0.CO;2-B  0.352
1997 Randolph JB, Waggoner AS. Stability, specificity and fluorescence brightness of multiply-labeled fluorescent DNA probes. Nucleic Acids Research. 25: 2923-9. PMID 9207044 DOI: 10.1093/nar/25.14.2923  0.44
1996 Dow AI, Shafer SA, Kirkwood JM, Mascari RA, Waggoner AS. Automatic multiparameter fluorescence imaging for determining lymphocyte phenotype and activation status in melanoma tissue sections. Cytometry. 25: 71-81. PMID 8875056 DOI: 10.1002/(SICI)1097-0320(19960901)25:1<71::AID-CYTO8>3.0.CO;2-H  0.395
1996 Mujumdar SR, Mujumdar RB, Grant CM, Waggoner AS. Cyanine-labeling reagents: sulfobenzindocyanine succinimidyl esters. Bioconjugate Chemistry. 7: 356-62. PMID 8816960 DOI: 10.1021/bc960021b  0.393
1996 Waggoner A, Taylor L, Seadler A, Dunlay T. Multiparameter fluorescence imaging microscopy: Reagents and instruments Human Pathology. 27: 494-502. PMID 8621188 DOI: 10.1016/S0046-8177(96)90092-1  0.343
1995 Southwick PL, Hahn KM, Chao J, Perry PL, Wagman AS, Wagner M, Waggoner AS. A long-wavelength biolabeling reagent based on the oxonol fluorophore. Journal of Fluorescence. 5: 231-5. PMID 24226669 DOI: 10.1007/Bf00727544  0.6
1995 Waggoner A. Covalent labeling of proteins and nucleic acids with fluorophores Methods in Enzymology. 246: 362-373. PMID 7752931 DOI: 10.1016/0076-6879(95)46017-9  0.455
1995 Ballou B, Fisher GW, Waggoner AS, Farkas DL, Reiland JM, Jaffe R, Mujumdar RB, Mujumdar SR, Hakala TR. Tumor labeling in vivo using cyanine-conjugated monoclonal antibodies. Cancer Immunology, Immunotherapy : Cii. 41: 257-63. PMID 7489569 DOI: 10.1007/s002620050226  0.306
1994 Zhu Z, Chao J, Yu H, Waggoner AS. Directly labeled DNA probes using fluorescent nucleotides with different length linkers. Nucleic Acids Research. 22: 3418-22. PMID 8078779 DOI: 10.1093/Nar/22.16.3418  0.39
1994 Yu H, Chao J, Patek D, Mujumdar R, Mujumdar S, Waggoner AS. Cyanine dye dUTP analogs for enzymatic labeling of DNA probes. Nucleic Acids Research. 22: 3226-32. PMID 8065939 DOI: 10.1093/Nar/22.15.3226  0.364
1993 Waggoner AS, Ernst LA, Chen CH, Rechtenwald DJ. PE-CY5. A new fluorescent antibody label for three-color flow cytometry with a single laser. Annals of the New York Academy of Sciences. 677: 185-93. PMID 8494207 DOI: 10.1111/j.1749-6632.1993.tb38776.x  0.368
1993 Hahn KM, Conrad PA, Chao JC, Taylor DL, Waggoner AS. A photocross-linking fluorescent indicator of mitochondrial membrane potential. The Journal of Histochemistry and Cytochemistry : Official Journal of the Histochemistry Society. 41: 631-4. PMID 8450203 DOI: 10.1177/41.4.8450203  0.547
1993 Mujumdar RB, Ernst LA, Mujumdar SR, Lewis CJ, Waggoner AS. Cyanine dye labeling reagents: sulfoindocyanine succinimidyl esters. Bioconjugate Chemistry. 4: 105-11. PMID 7873641 DOI: 10.1021/Bc00020A001  0.366
1992 Yu H, Ernst L, Wagner M, Waggoner A. Sensitive detection of RNAs in single cells by flow cytometry. Nucleic Acids Research. 20: 83-8. PMID 1738608 DOI: 10.1093/nar/20.1.83  0.343
1991 Galbraith W, Wagner MC, Chao J, Abaza M, Ernst LA, Nederlof MA, Hartsock RJ, Taylor DL, Waggoner AS. Imaging cytometry by multiparameter fluorescence. Cytometry. 12: 579-96. PMID 1782829 DOI: 10.1002/Cyto.990120702  0.397
1990 Southwick PL, Ernst LA, Tauriello EW, Parker SR, Mujumdar RB, Mujumdar SR, Clever HA, Waggoner AS. Cyanine dye labeling reagents--carboxymethylindocyanine succinimidyl esters. Cytometry. 11: 418-30. PMID 2340776 DOI: 10.1002/cyto.990110313  0.446
1990 Hahn KM, Waggoner AS, Taylor DL. A calcium-sensitive fluorescent analog of calmodulin based on a novel calmodulin-binding fluorophore. The Journal of Biological Chemistry. 265: 20335-45. PMID 2173702  0.492
1989 Galbraith W, Ryan KW, Gliksman N, Taylor DL, Waggoner AS. Multiple spectral parameter imaging in quantitative fluorescence microscopy. I: Quantitation of bead standards. Computerized Medical Imaging and Graphics : the Official Journal of the Computerized Medical Imaging Society. 13: 47-60. PMID 2924284 DOI: 10.1016/0895-6111(89)90078-5  0.378
1989 Ernst LA, Gupta RK, Mujumdar RB, Waggoner AS. Cyanine dye labeling reagents for sulfhydryl groups. Cytometry. 10: 3-10. PMID 2917472 DOI: 10.1002/cyto.990100103  0.421
1989 Mujumdar RB, Ernst LA, Mujumdar SR, Waggoner AS. Cyanine dye labeling reagents containing isothiocyanate groups. Cytometry. 10: 11-9. PMID 2917470 DOI: 10.1002/cyto.990100104  0.421
1989 Waggoner A, DeBiasio R, Conrad P, Bright GR, Ernst L, Ryan K, Nederlof M, Taylor D. Multiple spectral parameter imaging. Methods in Cell Biology. 30: 449-78. PMID 2648118 DOI: 10.1016/S0091-679X(08)60990-5  0.382
1988 George EB, Nyirjesy P, Basson M, Ernst LA, Pratap PR, Freedman JC, Waggoner AS. Impermeant potential-sensitive oxonol dyes: I. Evidence for an "on-off" mechanism. The Journal of Membrane Biology. 103: 245-53. PMID 3184175 DOI: 10.1007/BF01993984  0.324
1988 Southwick PL, Cairns JG, Ernst LA, Waggoner AS. One pot fischer synthesis of (2, 3, 3-trimethyl-3-H-indol-5-yl)-acetic acid. derivatives as intermediates for fluorescent biolabels Organic Preparations and Procedures International. 20: 279-284. DOI: 10.1080/00304948809355822  0.327
1987 DeBiasio R, Bright GR, Ernst LA, Waggoner AS, Taylor DL. Five-parameter fluorescence imaging: wound healing of living Swiss 3T3 cells. The Journal of Cell Biology. 105: 1613-22. PMID 2444600 DOI: 10.1083/Jcb.105.4.1613  0.363
1985 Lanni F, Waggoner AS, Taylor DL. Structural organization of interphase 3T3 fibroblasts studied by total internal reflection fluorescence microscopy. The Journal of Cell Biology. 100: 1091-102. PMID 3980580 DOI: 10.1083/Jcb.100.4.1091  0.393
1981 Gupta RK, Salzberg BM, Grinvald A, Cohen LB, Kamino K, Lesher S, Boyle MB, Waggoner AS, Wang CH. Improvements in optical methods for measuring rapid changes in membrane potential. The Journal of Membrane Biology. 58: 123-37. PMID 7218335 DOI: 10.1007/Bf01870975  0.34
1979 Waggoner AS. The use of cyanine dyes for the determination of membrane potentials in cells, organelles, and vesicles. Methods in Enzymology. 55: 689-95. PMID 459861 DOI: 10.1016/0076-6879(79)55077-0  0.403
1971 Waggoner AS, Stryer L. Induced optical activity of the metarhodopsins. Biochemistry. 10: 3250-4. PMID 5119249 DOI: 10.1021/Bi00793A014  0.499
1970 Waggoner AS, Stryer L. Fluorescent probes of biological membranes. Proceedings of the National Academy of Sciences of the United States of America. 67: 579-89. PMID 5289011 DOI: 10.1073/Pnas.67.2.579  0.597
1969 Libertini LJ, Waggoner AS, Jost PC, Griffith OH. Orientation of lipid spin labels in lecithin multilayers. Proceedings of the National Academy of Sciences of the United States of America. 64: 13-9. PMID 4312747  0.452
1969 Waggoner AS, Kingzett TJ, Rottschaefer S, Griffith OH, Keith AD. A spin-labeled lipid for probing biological membranes. Chemistry and Physics of Lipids. 3: 245-53. PMID 4310541 DOI: 10.1016/0009-3084(69)90016-4  0.454
1969 Griffith OH, Waggoner AS. Nitroxide free radicals: spin labels for probing biomolecular structure Accounts of Chemical Research. 2: 17-24. DOI: 10.1021/AR50013A003  0.444
1968 Keith AD, Waggoner AS, Griffith OH. Spin-labeled mitochondrial lipids in Neurospora crassa. Proceedings of the National Academy of Sciences of the United States of America. 61: 819-26. PMID 4301148 DOI: 10.1073/Pnas.61.3.819  0.431
1968 Waggoner AS, Keith AD, Griffith OH. Electron spin resonance of solubilized long-chain nitroxides The Journal of Physical Chemistry. 72: 4129-4132. DOI: 10.1021/J100858A030  0.39
1967 Waggoner AS, Griffith OH, Christensen CR. Magnetic resonance of nitroxide probes in micelle-containing solutions. Proceedings of the National Academy of Sciences of the United States of America. 57: 1198-205. PMID 16591556  0.392
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