| Year |
Citation |
Score |
| 2020 |
Campbell DL, Thessen AE, Ries L. A novel curation system to facilitate data integration across regional citizen science survey programs. Peerj. 8: e9219. PMID 32821528 DOI: 10.7717/Peerj.9219 |
0.339 |
|
| 2018 |
Thessen AE, Poelen JH, Collins M, Hammock J. 20 GB in 10 minutes: a case for linking major biodiversity databases using an open socio-technical infrastructure and a pragmatic, cross-institutional collaboration Peerj Computer Science. 4: e164. DOI: 10.7717/Peerj-Cs.164 |
0.375 |
|
| 2017 |
Gandy LM, Gumm J, Fertig B, Thessen A, Kennish MJ, Chavan S, Marchionni L, Xia X, Shankrit S, Fertig EJ. Synthesizer: Expediting synthesis studies from context-free data with information retrieval techniques. Plos One. 12: e0175860. PMID 28437440 DOI: 10.1371/Journal.Pone.0175860 |
0.336 |
|
| 2016 |
Patterson D, Mozzherin D, Shorthouse DP, Thessen A. Challenges with using names to link digital biodiversity information. Biodiversity Data Journal. e8080. PMID 27346955 DOI: 10.3897/Bdj.4.E8080 |
0.381 |
|
| 2016 |
Thessen AE, McGinnis S, North EW. Lessons learned while building the Deepwater Horizon Database: Toward improved data sharing in coastal science Computers and Geosciences. 87: 84-90. DOI: 10.1016/J.Cageo.2015.12.001 |
0.384 |
|
| 2016 |
Thessen AE, Fertig B, Jarvis JC, Rhodes AC. Data Infrastructures for Estuarine and Coastal Ecological Syntheses Estuaries and Coasts. 39: 295-310. DOI: 10.1007/S12237-015-0045-1 |
0.389 |
|
| 2015 |
Thessen AE, Bunker DE, Buttigieg PL, Cooper LD, Dahdul WM, Domisch S, Franz NM, Jaiswal P, Lawrence-Dill CJ, Midford PE, Mungall CJ, Ramírez MJ, Specht CD, Vogt L, Vos RA, et al. Emerging semantics to link phenotype and environment. Peerj. 3: e1470. PMID 26713234 DOI: 10.7717/Peerj.1470 |
0.37 |
|
| 2015 |
Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, ... ... Thessen A, et al. Finding our way through phenotypes. Plos Biology. 13: e1002033. PMID 25562316 DOI: 10.1371/Journal.Pbio.1002033 |
0.37 |
|
| 2014 |
Quintero E, Thessen AE, Arias-Caballero P, Ayala-Orozco B. A statistical assessment of population trends for data deficient Mexican amphibians. Peerj. 2: e703. PMID 25548736 DOI: 10.7717/Peerj.703 |
0.371 |
|
| 2014 |
Obrst L, Gruninger M, Baclawski K, Bennett M, Brickley D, Berg-Cross G, Hitzler P, Janowicz K, Kapp C, Kutz O, Lange C, Levenchuk A, Quattri F, Rector A, Schneider T, ... ... Thessen A, et al. Semantic web and big data meets applied ontology Applied Ontology. 9: 155-170. DOI: 10.3233/Ao-140135 |
0.333 |
|
| 2013 |
Mayernik MS, DiLauro T, Duerr R, Metsger E, Thessen AE, Choudhury GS. Data conservancy provenance, context, and lineage services: Key components for data preservation and curation Data Science Journal. 12: 158-171. DOI: 10.2481/Dsj.12-039 |
0.3 |
|
| 2012 |
Thessen AE, Patterson DJ, Murray SA. The taxonomic significance of species that have only been observed once: the genus Gymnodinium (Dinoflagellata) as an example. Plos One. 7: e44015. PMID 22952856 DOI: 10.1371/Journal.Pone.0044015 |
0.353 |
|
| 2012 |
Murray SA, Patterson DJ, Thessen AE. Transcriptomics and microbial eukaryote diversity: a way forward. Trends in Ecology & Evolution. 27: 651-2; author reply . PMID 22940223 DOI: 10.1016/J.Tree.2012.08.011 |
0.376 |
|
| 2012 |
Trainer VL, Bates SS, Lundholm N, Thessen AE, Cochlan WP, Adams NG, Trick CG. Pseudo-nitzschia physiological ecology, phylogeny, toxicity, monitoring and impacts on ecosystem health Harmful Algae. 14: 271-300. DOI: 10.1016/J.Hal.2011.10.025 |
0.347 |
|
| 2012 |
Enke N, Thessen A, Bach K, Bendix J, Seeger B, Gemeinholzer B. The user's view on biodiversity data sharing - Investigating facts of acceptance and requirements to realize a sustainable use of research data - Ecological Informatics. 11: 25-33. DOI: 10.1016/J.Ecoinf.2012.03.004 |
0.357 |
|
| 2011 |
Thessen AE, Patterson DJ. Data issues in the life sciences. Zookeys. 15-51. PMID 22207805 DOI: 10.3897/Zookeys.150.1766 |
0.347 |
|
| 2010 |
Field D, Sansone S, Delong EF, Sterk P, Friedberg I, Gaudet P, Lewis S, Kottmann R, Hirschman L, Garrity G, Cochrane G, Wooley J, Meyer F, Hunter S, White O, ... ... Thessen A, et al. Meeting Report: BioSharing at ISMB 2010. Standards in Genomic Sciences. 3: 254-8. PMID 21304729 DOI: 10.4056/Sigs/1403501 |
0.32 |
|
| 2010 |
Thessen AE, Soniat TM, Dortch Q, Doucette GJ. Crassostrea virginica grazing on toxic and non-toxic diatoms Toxicon. 55: 570-579. PMID 19835902 DOI: 10.1016/J.Toxicon.2009.10.011 |
0.346 |
|
| 2009 |
Thessen AE, Bowers HA, Stoecker DK. Intra- and interspecies differences in growth and toxicity of Pseudo-nitzschia while using different nitrogen sources Harmful Algae. 8: 792-810. DOI: 10.1016/J.Hal.2009.01.003 |
0.549 |
|
| 2008 |
Stoecker DK, Thessen AE, Gustafson DE. "Windows of opportunity" for dinoflagellate blooms: Reduced microzooplankton net growth coupled to eutrophication Harmful Algae. 8: 158-166. DOI: 10.1016/J.Hal.2008.08.021 |
0.532 |
|
| 2008 |
Thessen AE, Stoecker DK. Distribution, abundance and domoic acid analysis of the toxic diatom genus Pseudo-nitzschia from the Chesapeake Bay Estuaries and Coasts. 31: 664-672. DOI: 10.1007/S12237-008-9053-8 |
0.526 |
|
| 2006 |
Maier Brown AF, Dortch Q, Dolah FMV, Leighfield TA, Morrison W, Thessen AE, Steidinger K, Richardson B, Moncreiff CA, Pennock JR. Effect of salinity on the distribution, growth, and toxicity of Karenia spp Harmful Algae. 5: 199-212. DOI: 10.1016/J.Hal.2005.07.004 |
0.35 |
|
| 2005 |
Thessen AE, Dortch Q, Parsons ML, Morrison W. Effect of salinity on Pseudo-nitzschia species (Bacillariophyceae) growth and distribution Journal of Phycology. 41: 21-29. DOI: 10.1111/J.1529-8817.2005.04077.X |
0.388 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2018 |
Endara L, Thessen AE, Cole HA, Walls R, Gkoutos G, Cao Y, Chong SS, Cui H. Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier. Biodiversity Data Journal. e29232. PMID 30532623 DOI: 10.3897/Bdj.6.E29232 |
0.297 |
|
| 2014 |
Thessen AE, Parr CS. Knowledge extraction and semantic annotation of text from the encyclopedia of life. Plos One. 9: e89550. PMID 24594988 DOI: 10.1371/Journal.Pone.0089550 |
0.294 |
|
| 2013 |
Codispoti LA, Kelly V, Thessen A, Matrai P, Suttles S, Hill V, Steele M, Light B. Synthesis of primary production in the Arctic Ocean: III. Nitrate and phosphate based estimates of net community production Progress in Oceanography. 110: 126-150. DOI: 10.1016/J.Pocean.2012.11.006 |
0.292 |
|
| 2012 |
Thessen AE, Cui H, Mozzherin D. Applications of natural language processing in biodiversity science. Advances in Bioinformatics. 2012: 391574. PMID 22685456 DOI: 10.1155/2012/391574 |
0.289 |
|
| 2018 |
Thessen AE, Poelen JH, Collins M, Hammock J. 20 GB in 10 minutes: a case for linking major biodiversity databases using an open socio-technical infrastructure and a pragmatic, cross-institutional collaboration. Peerj. Computer Science. 4: e164. PMID 33816817 DOI: 10.7717/peerj-cs.164 |
0.275 |
|
| 2023 |
Clarke JL, Cooper LD, Poelchau MF, Berardini TZ, Elser J, Farmer AD, Ficklin S, Kumari S, Laporte MA, Nelson RT, Sadohara R, Selby P, Thessen AE, Whitehead B, Sen TZ. Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium. Database : the Journal of Biological Databases and Curation. 2023. PMID 37971715 DOI: 10.1093/database/baad076 |
0.271 |
|
| 2020 |
Groom Q, Güntsch A, Huybrechts P, Kearney N, Leachman S, Nicolson N, Page RDM, Shorthouse DP, Thessen AE, Haston E. People are essential to linking biodiversity data. Database : the Journal of Biological Databases and Curation. 2020. PMID 33439246 DOI: 10.1093/database/baaa072 |
0.269 |
|
| 2020 |
Thessen AE, Walls RL, Vogt L, Singer J, Warren R, Buttigieg PL, Balhoff JP, Mungall CJ, McGuinness DL, Stucky BJ, Yoder MJ, Haendel MA. Transforming the study of organisms: Phenomic data models and knowledge bases. Plos Computational Biology. 16: e1008376. PMID 33232313 DOI: 10.1371/journal.pcbi.1008376 |
0.261 |
|
| 2017 |
Thessen AE, North EW. Calculating in situ degradation rates of hydrocarbon compounds in deep waters of the Gulf of Mexico. Marine Pollution Bulletin. PMID 28645762 DOI: 10.1016/J.Marpolbul.2017.06.004 |
0.259 |
|
| 2023 |
Stefancsik R, Balhoff JP, Balk MA, Ball RL, Bello SM, Caron AR, Chesler EJ, de Souza V, Gehrke S, Haendel M, Harris LW, Harris NL, Ibrahim A, Koehler S, Matentzoglu N, ... ... Thessen AE, et al. The Ontology of Biological Attributes (OBA)-computational traits for the life sciences. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 37076585 DOI: 10.1007/s00335-023-09992-1 |
0.258 |
|
| 2018 |
Lancaster AK, Thessen AE, Virapongse A. A new paradigm for the scientific enterprise: nurturing the ecosystem. F1000research. 7: 803. PMID 30345023 DOI: 10.12688/F1000Research.15078.1 |
0.255 |
|
| 2022 |
Thessen AE, Marvel S, Achenbach JC, Fischer S, Haendel MA, Hayward K, Klüver N, Könemann S, Legradi J, Lein P, Leong C, Mylroie JE, Padilla S, Perone D, Planchart A, et al. Implementation of Zebrafish Ontologies for Toxicology Screening. Frontiers in Toxicology. 4: 817999. PMID 35387429 DOI: 10.3389/ftox.2022.817999 |
0.254 |
|
| 2023 |
Stefancsik R, Balhoff JP, Balk MA, Ball R, Bello SM, Caron AR, Chessler E, de Souza V, Gehrke S, Haendel M, Harris LW, Harris NL, Ibrahim A, Koehler S, Matentzoglu N, ... ... Thessen AE, et al. The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences. Biorxiv : the Preprint Server For Biology. PMID 36747660 DOI: 10.1101/2023.01.26.525742 |
0.253 |
|
| 2021 |
Holmgren SD, Boyles RR, Cronk RD, Duncan CG, Kwok RK, Lunn RM, Osborn KC, Thessen AE, Schmitt CP. Catalyzing Knowledge-Driven Discovery in Environmental Health Sciences through a Community-Driven Harmonized Language. International Journal of Environmental Research and Public Health. 18. PMID 34501574 DOI: 10.3390/ijerph18178985 |
0.245 |
|
| 2013 |
Sinha AK, Thessen AE, Barnes CG. Geoinformatics: Toward an integrative view of Earth as a system Special Paper of the Geological Society of America. 500: 591-604. DOI: 10.1130/2013.2500(19) |
0.245 |
|
| 2021 |
Chan L, Vasilevsky N, Thessen A, McMurry J, Haendel M. The landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research. Database : the Journal of Biological Databases and Curation. 2021. PMID 33494105 DOI: 10.1093/database/baab003 |
0.231 |
|
| 2015 |
North EW, Adams EE, Thessen AE, Schlag Z, He R, Socolofsky SA, Masutani SM, Peckham SD. The influence of droplet size and biodegradation on the transport of subsurface oil droplets during the Deepwater Horizon spill: A model sensitivity study Environmental Research Letters. 10. DOI: 10.1088/1748-9326/10/2/024016 |
0.227 |
|
| 2021 |
Thessen AE, Bogdan P, Patterson DJ, Casey TM, Hinojo-Hinojo C, de Lange O, Haendel MA. From Reductionism to Reintegration: Solving society's most pressing problems requires building bridges between data types across the life sciences. Plos Biology. 19: e3001129. PMID 33770077 DOI: 10.1371/journal.pbio.3001129 |
0.225 |
|
| 2010 |
Hamed AA, Lee BS, Thessen AE. Ecosystems monitoring: An information extraction and event processing scientific workflow Proceedings - 2010 6th World Congress On Services, Services-1 2010. 302-305. DOI: 10.1109/SERVICES.2010.18 |
0.221 |
|
| 2019 |
Shefchek KA, Harris NL, Gargano M, Matentzoglu N, Unni D, Brush M, Keith D, Conlin T, Vasilevsky N, Zhang XA, Balhoff JP, Babb L, Bello SM, Blau H, Bradford Y, ... ... Thessen A, et al. The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Research. PMID 31701156 DOI: 10.1093/nar/gkz997 |
0.21 |
|
| 2024 |
Chung MK, House JS, Akhtari FS, Makris KC, Langston MA, Islam KT, Holmes P, Chadeau-Hyam M, Smirnov AI, Du X, Thessen AE, Cui Y, Zhang K, Manrai AK, Motsinger-Reif A, et al. Decoding the exposome: data science methodologies and implications in exposome-wide association studies (ExWASs). Exposome. 4: osae001. PMID 38344436 DOI: 10.1093/exposome/osae001 |
0.198 |
|
| 2023 |
Thessen AE, Cooper L, Swetnam TL, Hegde H, Reese J, Elser J, Jaiswal P. Using knowledge graphs to infer gene expression in plants. Frontiers in Artificial Intelligence. 6: 1201002. PMID 37384147 DOI: 10.3389/frai.2023.1201002 |
0.197 |
|
| 2020 |
Thessen AE, Grondin CJ, Kulkarni RD, Brander S, Truong L, Vasilevsky NA, Callahan TJ, Chan LE, Westra B, Willis M, Rothenberg SE, Jarabek AM, Burgoon L, Korrick SA, Haendel MA. Community Approaches for Integrating Environmental Exposures into Human Models of Disease. Environmental Health Perspectives. 128: 125002. PMID 33369481 DOI: 10.1289/EHP7215 |
0.192 |
|
| 2018 |
Thessen A, Preciado J, Jain P, Martin J, Palmer M, Bhat R. Automated Trait Extraction using ClearEarth, a Natural Language Processing System for Text Mining in Natural Sciences Biodiversity Information Science and Standards. 2: e26080. DOI: 10.3897/BISS.2.26080 |
0.189 |
|
| 2022 |
Unni DR, Moxon SAT, Bada M, Brush M, Bruskiewich R, Caufield JH, Clemons PA, Dancik V, Dumontier M, Fecho K, Glusman G, Hadlock JJ, Harris NL, Joshi A, Putman T, ... ... Thessen AE, et al. Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science. Clinical and Translational Science. 15: 1848-1855. PMID 36125173 DOI: 10.1111/cts.13302 |
0.187 |
|
| 2023 |
Chan LE, Thessen AE, Duncan WD, Matentzoglu N, Schmitt C, Grondin CJ, Vasilevsky N, McMurry JA, Robinson PN, Mungall CJ, Haendel MA. The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond. Journal of Biomedical Semantics. 14: 3. PMID 36823605 DOI: 10.1186/s13326-023-00283-x |
0.178 |
|
| 2023 |
Gosline SJC, Kim DN, Pande P, Thomas DG, Truong L, Hoffman P, Barton M, Loftus J, Moran A, Hampton S, Dowson S, Franklin L, Degnan D, Anderson L, Thessen A, et al. The Superfund Research Program Analytics Portal: linking environmental chemical exposure to biological phenotypes. Scientific Data. 10: 151. PMID 36944655 DOI: 10.1038/s41597-023-02021-5 |
0.171 |
|
| 2023 |
Fecho K, Bizon C, Issabekova T, Moxon S, Thessen AE, Abdollahi S, Baranzini SE, Belhu B, Byrd WE, Chung L, Crouse A, Duby MP, Ferguson S, Foksinska A, Forero L, et al. An approach for collaborative development of a federated biomedical knowledge graph-based question-answering system: Question-of-the-Month challenges. Journal of Clinical and Translational Science. 7: e214. PMID 37900350 DOI: 10.1017/cts.2023.619 |
0.15 |
|
| 2022 |
Matentzoglu N, Balhoff JP, Bello SM, Bizon C, Brush M, Callahan TJ, Chute CG, Duncan WD, Evelo CT, Gabriel D, Graybeal J, Gray A, Gyori BM, Haendel M, Harmse H, ... ... Thessen A, et al. A Simple Standard for Sharing Ontological Mappings (SSSOM). Database : the Journal of Biological Databases and Curation. 2022. PMID 35616100 DOI: 10.1093/database/baac035 |
0.146 |
|
| 2023 |
Holmgren S, Bell SM, Wignall J, Duncan CG, Kwok RK, Cronk R, Osborn K, Black S, Thessen A, Schmitt C. Workshop Report: Catalyzing Knowledge-Driven Discovery in Environmental Health Sciences through a Harmonized Language. International Journal of Environmental Research and Public Health. 20. PMID 36767684 DOI: 10.3390/ijerph20032317 |
0.144 |
|
| 2010 |
Amaral-Zettler L, Artigas LF, Baross J, Bharathi P.A. L, Boetius A, Chandramohan D, Herndl G, Kogure K, Neal P, Pedrós-Alió C, Ramette A, Schouten S, Stal L, Thessen A, Leeuw JD, et al. A Global Census of Marine Microbes Life in the World's Oceans: Diversity, Distribution, and Abundance. 221-245. DOI: 10.1002/9781444325508.ch12 |
0.128 |
|
| 2023 |
Caufield JH, Putman T, Schaper K, Unni DR, Hegde H, Callahan TJ, Cappelletti L, Moxon SAT, Ravanmehr V, Carbon S, Chan LE, Cortes K, Shefchek KA, Elsarboukh G, Balhoff J, ... ... Thessen AE, et al. KG-Hub - Building and Exchanging Biological Knowledge Graphs. Bioinformatics (Oxford, England). PMID 37389415 DOI: 10.1093/bioinformatics/btad418 |
0.096 |
|
| 2016 |
Thessen A. Adoption of Machine Learning Techniques in Ecology and Earth Science One Ecosystem. 1: e8621. DOI: 10.3897/oneeco.1.e8621 |
0.047 |
|
| Hide low-probability matches. |