Stéphane Boissinot - Publications

Affiliations: 
Biology City University of New York, New York, NY, United States 
Area:
Bioinformatics Biology, Molecular Biology, Evolution and Development Biology

65 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Goutte S, Reyes-Velasco J, Kassie A, Boissinot S. Genetic and morphometric analyses of historical type specimens clarify the taxonomy of the Ethiopian species complex (Anura, Arthroleptidae). Zookeys. 1128: 63-97. PMID 36762238 DOI: 10.3897/zookeys.1128.82176  0.314
2022 Wilcox JJS, Arca-Ruibal B, Samour J, Mateuta V, Idaghdour Y, Boissinot S. Linked-Read Sequencing of Eight Falcons Reveals a Unique Genomic Architecture in Flux. Genome Biology and Evolution. PMID 35700227 DOI: 10.1093/gbe/evac090  0.378
2022 Manthey JD, Bourgeois Y, Meheretu Y, Boissinot S. Varied diversification patterns and distinct demographic trajectories in Ethiopian montane forest bird (Aves: Passeriformes) populations separated by the Great Rift Valley. Molecular Ecology. PMID 35239243 DOI: 10.1111/mec.16417  0.415
2021 Almojil D, Bourgeois Y, Falis M, Hariyani I, Wilcox J, Boissinot S. The Structural, Functional and Evolutionary Impact of Transposable Elements in Eukaryotes. Genes. 12. PMID 34203645 DOI: 10.3390/genes12060918  0.392
2021 Kirchhof S, Lyra ML, Rodríguez A, Ineich I, Müller J, Rödel MO, Trape JF, Vences M, Boissinot S. Mitogenome analyses elucidate the evolutionary relationships of a probable Eocene wet tropics relic in the xerophile lizard genus Acanthodactylus. Scientific Reports. 11: 4858. PMID 33649347 DOI: 10.1038/s41598-021-83422-7  0.312
2020 Bourgeois Y, Ruggiero RP, Hariyani I, Boissinot S. Disentangling the determinants of transposable elements dynamics in vertebrate genomes using empirical evidences and simulations. Plos Genetics. 16: e1009082. PMID 33017388 DOI: 10.1371/journal.pgen.1009082  0.375
2020 Ruggiero RP, Boissinot S. Variation in base composition underlies functional and evolutionary divergence in non-LTR retrotransposons. Mobile Dna. 11: 14. PMID 32280379 DOI: 10.1186/S13100-020-00209-9  0.468
2020 Reyes-Velasco J, Adams RH, Boissinot S, Parkinson CL, Campbell JA, Castoe TA, Smith EN. Genome-wide SNPs clarify lineage diversity confused by coloration in coralsnakes of the Micrurus diastema species complex (Serpentes: Elapidae). Molecular Phylogenetics and Evolution. 106770. PMID 32084510 DOI: 10.1016/J.Ympev.2020.106770  0.397
2019 Wilcox JJS, Boissinot S, Idaghdour Y. Falcon genomics in the context of conservation, speciation, and human culture. Ecology and Evolution. 9: 14523-14537. PMID 31938538 DOI: 10.1002/Ece3.5864  0.497
2019 Bourgeois Y, Boissinot S. Selection at behavioral, developmental and metabolic genes is associated with the northward expansion of a successful tropical colonizer. Molecular Ecology. PMID 31233650 DOI: 10.1111/Mec.15162  0.431
2019 Bourgeois Y, Boissinot S. On the Population Dynamics of Junk: A Review on the Population Genomics of Transposable Elements. Genes. 10. PMID 31151307 DOI: 10.3390/Genes10060419  0.511
2019 Bourgeois Y, Ruggiero RP, Manthey JD, Boissinot S. Recent secondary contacts, linked selection and variable recombination rates shape genomic diversity in the model species Anolis carolinensis. Genome Biology and Evolution. PMID 31134281 DOI: 10.1093/Gbe/Evz110  0.565
2019 Goutte S, Reyes-Velasco J, Boissinot S. A new species of puddle frog from an unexplored mountain in southwestern Ethiopia (Anura, Phrynobatrachidae, ). Zookeys. 53-70. PMID 30799972 DOI: 10.3897/Zookeys.824.31570  0.38
2019 Boissinot S, Bourgeois Y, Manthey JD, Ruggiero RP. The Mobilome of Reptiles: Evolution, Structure, and Function. Cytogenetic and Genome Research. PMID 30739120 DOI: 10.1159/000496416  0.509
2019 Manthey JD, Boissinot S, Moyle RG. Biodiversity genomics of North American Dryobates woodpeckers reveals little gene flow across the D. nuttallii x D. scalaris contact zone The Auk. 136: 1-12. DOI: 10.1093/Auk/Ukz015  0.521
2018 Sookdeo A, Ruiz-García M, Schneider H, Boissinot S. Contrasting Rates of LINE-1 Amplification among New World Primates of the Atelidae Family. Cytogenetic and Genome Research. 154: 217-228. PMID 29991050 DOI: 10.1159/000490481  0.454
2018 Manthey JD, Moyle RG, Boissinot S. Multiple and independent phases of transposable element amplification in the genomes of Piciformes (woodpeckers and allies). Genome Biology and Evolution. PMID 29850797 DOI: 10.1093/Gbe/Evy105  0.503
2018 Xue AT, Ruggiero RP, Hickerson MJ, Boissinot S. Differential Effect of Selection against LINE Retrotransposons Among Vertebrates Inferred From Whole-Genome Data and Demographic Modeling. Genome Biology and Evolution. PMID 29688421 DOI: 10.1093/Gbe/Evy083  0.473
2018 Sookdeo A, Hepp CM, Boissinot S. Contrasted patterns of evolution of the LINE-1 retrotransposon in perissodactyls: the history of a LINE-1 extinction. Mobile Dna. 9: 12. PMID 29610583 DOI: 10.1186/S13100-018-0117-4  0.449
2018 Reyes-Velasco J, Manthey JD, Freilich X, Boissinot S. Diversification of African Tree Frogs (Genus Leptopelis) in the Highlands of Ethiopia. Molecular Ecology. PMID 29603468 DOI: 10.1111/Mec.14573  0.493
2018 Reyes-Velasco J, Manthey JD, Bourgeois Y, Freilich X, Boissinot S. Revisiting the phylogeography, demography and taxonomy of the frog genus Ptychadena in the Ethiopian highlands with the use of genome-wide SNP data. Plos One. 13: e0190440. PMID 29389966 DOI: 10.1371/Journal.Pone.0190440  0.577
2018 Roman I, Bourgeois Y, Reyes-Velasco J, Jensen OP, Waldman J, Boissinot S. Contrasted patterns of divergence and gene flow among five fish species in a Mongolian rift lake following glaciation Biological Journal of the Linnean Society. 125: 115-125. DOI: 10.1093/Biolinnean/Bly083  0.346
2017 Liang J, Shaulov Y, Savage-Dunn C, Boissinot S, Hoque T. Chloride intracellular channel proteins respond to heat stress in Caenorhabditis elegans. Plos One. 12: e0184308. PMID 28886120 DOI: 10.1371/Journal.Pone.0184308  0.3
2017 Ruggiero RP, Bourgeois Y, Boissinot S. LINE Insertion Polymorphisms are Abundant but at Low Frequencies across Populations of Anolis carolinensis. Frontiers in Genetics. 8: 44. PMID 28450881 DOI: 10.3389/Fgene.2017.00044  0.52
2017 Manthey JD, Reyes-Velasco J, Freilich X, Boissinot S. Diversification in a biodiversity hotspot: genomic variation in the river frog Amietia nutti across the Ethiopian Highlands Biological Journal of the Linnean Society. 122: 801-813. DOI: 10.1093/Biolinnean/Blx106  0.48
2016 Boissinot S, Sookdeo A. The Evolution of LINE-1 in Vertebrates. Genome Biology and Evolution. 8: 3485-3507. PMID 28175298 DOI: 10.1093/Gbe/Evw247  0.528
2016 Manthey JD, Tollis M, Lemmon AR, Moriarty Lemmon E, Boissinot S. Diversification in wild populations of the model organism Anolis carolinensis: A genome-wide phylogeographic investigation. Ecology and Evolution. 6: 8115-8125. PMID 27891220 DOI: 10.1002/Ece3.2547  0.763
2016 Boissinot S, Sookdeo A. The Evolution of Line-1 in Vertebrates. Genome Biology and Evolution. PMID 27797947 DOI: 10.1093/gbe/evw247  0.441
2016 Fish I, Boissinot S. Functional evolution of the OAS1 viral sensor: Insights from old world primates. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. PMID 27393659 DOI: 10.1016/J.Meegid.2016.07.005  0.352
2015 Fish I, Boissinot S. Contrasted patterns of variation and evolutionary convergence at the antiviral OAS1 gene in old world primates. Immunogenetics. 67: 487-99. PMID 26156123 DOI: 10.1007/S00251-015-0855-0  0.402
2014 Boissinot S, Alvarez L, Giraldo-Ramirez J, Tollis M. Neutral nuclear variation in Baboons (genus Papio) provides insights into their evolutionary and demographic histories. American Journal of Physical Anthropology. 155: 621-34. PMID 25234435 DOI: 10.1002/Ajpa.22618  0.736
2014 Tollis M, Boissinot S. Genetic variation in the green anole lizard (Anolis carolinensis) reveals island refugia and a fragmented Florida during the quaternary. Genetica. 142: 59-72. PMID 24379168 DOI: 10.1007/S10709-013-9754-1  0.725
2014 Freilich X, Tollis M, Boissinot S. Hiding in the highlands: evolution of a frog species complex of the genus Ptychadena in the Ethiopian highlands. Molecular Phylogenetics and Evolution. 71: 157-69. PMID 24315867 DOI: 10.1016/J.Ympev.2013.11.015  0.717
2013 Tollis M, Boissinot S. Lizards and LINEs: Selection and Demography Affect the Fate of L1 Retrotransposons in the Genome of the Green Anole (Anolis carolinensis). Genome Biology and Evolution. 5: 2019. PMID 27798071 DOI: 10.1093/gbe/evt167  0.709
2013 Tollis M, Boissinot S. Lizards and LINEs: selection and demography affect the fate of L1 retrotransposons in the genome of the green anole (Anolis carolinensis). Genome Biology and Evolution. 5: 1754-68. PMID 24013105 DOI: 10.1093/Gbe/Evt133  0.763
2013 Sookdeo A, Hepp CM, McClure MA, Boissinot S. Revisiting the evolution of mouse LINE-1 in the genomic era. Mobile Dna. 4: 3. PMID 23286374 DOI: 10.1186/1759-8753-4-3  0.491
2012 Tollis M, Boissinot S. The evolutionary dynamics of transposable elements in eukaryote genomes Genome Dynamics. 7: 68-91. PMID 22759814 DOI: 10.1159/000337126  0.493
2012 Tollis M, Ausubel G, Ghimire D, Boissinot S. Multi-locus phylogeographic and population genetic analysis of Anolis carolinensis: historical demography of a genomic model species. Plos One. 7: e38474. PMID 22685573 DOI: 10.1371/Journal.Pone.0038474  0.763
2012 Blass E, Bell M, Boissinot S. Accumulation and rapid decay of non-LTR retrotransposons in the genome of the three-spine stickleback. Genome Biology and Evolution. 4: 687-702. PMID 22534163 DOI: 10.1093/Gbe/Evs044  0.539
2012 Ferguson W, Dvora S, Fikes RW, Stone AC, Boissinot S. Long-term balancing selection at the antiviral gene OAS1 in Central African chimpanzees. Molecular Biology and Evolution. 29: 1093-103. PMID 22104212 DOI: 10.1093/Molbev/Msr247  0.631
2011 Kusumi K, Kulathinal RJ, Abzhanov A, Boissinot S, Crawford NG, Faircloth BC, Glenn TC, Janes DE, Losos JB, Menke DB, Poe S, Sanger TJ, Schneider CJ, Stapley J, Wade J, et al. Developing a community-based genetic nomenclature for anole lizards. Bmc Genomics. 12: 554. PMID 22077994 DOI: 10.1186/1471-2164-12-554  0.655
2011 Tollis M, Boissinot S. The transposable element profile of the anolis genome: How a lizard can provide insights into the evolution of vertebrate genome size and structure. Mobile Genetic Elements. 1: 107-111. PMID 22016857 DOI: 10.4161/Mge.1.2.17733  0.751
2011 Alföldi J, Di Palma F, Grabherr M, Williams C, Kong L, Mauceli E, Russell P, Lowe CB, Glor RE, Jaffe JD, Ray DA, Boissinot S, Shedlock AM, Botka C, Castoe TA, et al. The genome of the green anole lizard and a comparative analysis with birds and mammals. Nature. 477: 587-91. PMID 21881562 DOI: 10.1038/Nature10390  0.508
2011 Novick PA, Smith JD, Floumanhaft M, Ray DA, Boissinot S. The evolution and diversity of DNA transposons in the genome of the Lizard Anolis carolinensis. Genome Biology and Evolution. 3: 1-14. PMID 21127169 DOI: 10.1093/Gbe/Evq080  0.497
2010 Novick P, Smith J, Ray D, Boissinot S. Independent and parallel lateral transfer of DNA transposons in tetrapod genomes. Gene. 449: 85-94. PMID 19747963 DOI: 10.1016/J.Gene.2009.08.017  0.453
2009 Novick PA, Basta H, Floumanhaft M, McClure MA, Boissinot S. The evolutionary dynamics of autonomous non-LTR retrotransposons in the lizard Anolis carolinensis shows more similarity to fish than mammals. Molecular Biology and Evolution. 26: 1811-22. PMID 19420048 DOI: 10.1093/Molbev/Msp090  0.53
2008 Ferguson W, Dvora S, Gallo J, Orth A, Boissinot S. Long-term balancing selection at the west nile virus resistance gene, Oas1b, maintains transspecific polymorphisms in the house mouse. Molecular Biology and Evolution. 25: 1609-18. PMID 18460447 DOI: 10.1093/Molbev/Msn106  0.645
2007 Song M, Boissinot S. Selection against LINE-1 retrotransposons results principally from their ability to mediate ectopic recombination. Gene. 390: 206-13. PMID 17134851 DOI: 10.1016/J.Gene.2006.09.033  0.472
2006 Witherspoon DJ, Marchani EE, Watkins WS, Ostler CT, Wooding SP, Anders BA, Fowlkes JD, Boissinot S, Furano AV, Ray DA, Rogers AR, Batzer MA, Jorde LB. Human population genetic structure and diversity inferred from polymorphic L1(LINE-1) and Alu insertions. Human Heredity. 62: 30-46. PMID 17003565 DOI: 10.1159/000095851  0.494
2006 Graham T, Boissinot S. The genomic distribution of L1 elements: the role of insertion bias and natural selection. Journal of Biomedicine & Biotechnology. 2006: 75327. PMID 16877820 DOI: 10.1155/Jbb/2006/75327  0.483
2006 Boissinot S, Davis J, Entezam A, Petrov D, Furano AV. Fitness cost of LINE-1 (L1) activity in humans. Proceedings of the National Academy of Sciences of the United States of America. 103: 9590-4. PMID 16766655 DOI: 10.1073/Pnas.0603334103  0.417
2006 Khan H, Smit A, Boissinot S. Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates. Genome Research. 16: 78-87. PMID 16344559 DOI: 10.1101/Gr.4001406  0.411
2005 Boissinot S, Furano AV. The recent evolution of human L1 retrotransposons. Cytogenetic and Genome Research. 110: 402-6. PMID 16093692 DOI: 10.1159/000084972  0.429
2005 Martin SL, Li WL, Furano AV, Boissinot S. The structures of mouse and human L1 elements reflect their insertion mechanism. Cytogenetic and Genome Research. 110: 223-8. PMID 16093676 DOI: 10.1159/000084956  0.44
2004 Boissinot S, Entezam A, Young L, Munson PJ, Furano AV. The insertional history of an active family of L1 retrotransposons in humans. Genome Research. 14: 1221-31. PMID 15197167 DOI: 10.1101/Gr.2326704  0.494
2004 Boissinot S, Roos C, Furano AV. Different rates of LINE-1 (L1) retrotransposon amplification and evolution in New World monkeys. Journal of Molecular Evolution. 58: 122-30. PMID 14743320 DOI: 10.1007/S00239-003-2539-X  0.46
2004 Furano AV, Duvernell DD, Boissinot S. L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish. Trends in Genetics : Tig. 20: 9-14. PMID 14698614 DOI: 10.1016/J.Tig.2003.11.006  0.458
2001 Boissinot S, Furano AV. Adaptive evolution in LINE-1 retrotransposons. Molecular Biology and Evolution. 18: 2186-94. PMID 11719568 DOI: 10.1093/Oxfordjournals.Molbev.A003765  0.389
2001 Boissinot S, Entezam A, Furano AV. Selection against deleterious LINE-1-containing loci in the human lineage. Molecular Biology and Evolution. 18: 926-35. PMID 11371580 DOI: 10.1093/Oxfordjournals.Molbev.A003893  0.405
2000 Boissinot S, Chevret P, Furano AV. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Molecular Biology and Evolution. 17: 915-28. PMID 10833198 DOI: 10.1093/Oxfordjournals.Molbev.A026372  0.426
1998 Boissinot S, Tan Y, Shyue SK, Schneider H, Sampaio I, Neiswanger K, Hewett-Emmett D, Li WH. Origins and antiquity of X-linked triallelic color vision systems in New World monkeys. Proceedings of the National Academy of Sciences of the United States of America. 95: 13749-54. PMID 9811872 DOI: 10.1073/Pnas.95.23.13749  0.402
1998 Shyue SK, Boissinot S, Schneider H, Sampaio I, Schneider MP, Abee CR, Williams L, Hewett-Emmett D, Sperling HG, Cowing JA, Dulai KS, Hunt DM, Li WH. Molecular genetics of spectral tuning in New World monkey color vision. Journal of Molecular Evolution. 46: 697-702. PMID 9608052 DOI: 10.1007/Pl00006350  0.502
1997 Casane D, Boissinot S, Chang BHJ, Shimmin LC, Li WH. Mutation pattern variation among regions of the primate genome Journal of Molecular Evolution. 45: 216-226. PMID 9302314 DOI: 10.1007/Pl00006223  0.355
1997 Boissinot S, Ineich I, Thaler L, Guillaume CP. Hybrid origin and clonal diversity in the parthenogenetic gecko, Lepidodactylus lugubris in French Polynesia Journal of Herpetology. 31: 295-298. DOI: 10.2307/1565401  0.362
1994 Guillaume CP, Ineich I, Boissinot S. Allozyme evidence for specific status of the two French Polynesian skink species in the genus Emoia (Reptilia: Lacertilia) Copeia. 1042-1047. DOI: 10.2307/1446731  0.35
Show low-probability matches.