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Daniel Zenklusen - Publications

Affiliations: 
Université de Montréal, Montréal, Canada 
Area:
RNA
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53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Bensidoun P, Reiter T, Montpetit B, Zenklusen D, Oeffinger M. Nuclear mRNA metabolism drives selective basket assembly on a subset of nuclear pore complexes in budding yeast. Molecular Cell. 82: 3856-3871.e6. PMID 36220102 DOI: 10.1016/j.molcel.2022.09.019  0.53
2021 Bensidoun P, Zenklusen D, Oeffinger M. Choosing the right exit: How functional plasticity of the nuclear pore drives selective and efficient mRNA export. Wiley Interdisciplinary Reviews. Rna. e1660. PMID 33938148 DOI: 10.1002/wrna.1660  0.469
2021 Jayabalan AK, Adivarahan S, Koppula A, Abraham R, Batish M, Zenklusen D, Griffin DE, Leung AKL. Stress granule formation, disassembly, and composition are regulated by alphavirus ADP-ribosylhydrolase activity. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33547245 DOI: 10.1073/pnas.2021719118  0.334
2021 Jayabalan AK, Adivarahan S, Koppula A, Abraham R, Batish M, Zenklusen D, Griffin DE, Leung AKL. Stress granule formation, disassembly, and composition are regulated by alphavirus ADP-ribosylhydrolase activity. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33547245 DOI: 10.1073/pnas.2021719118  0.334
2021 Adivarahan S, Zenklusen D. Probing the Conformational State of mRNPs Using smFISH and SIM. Methods in Molecular Biology (Clifton, N.J.). 2209: 267-286. PMID 33201475 DOI: 10.1007/978-1-0716-0935-4_17  0.459
2019 Adivarahan S, Zenklusen D. Lessons from (pre-)mRNA Imaging. Advances in Experimental Medicine and Biology. 1203: 247-284. PMID 31811637 DOI: 10.1007/978-3-030-31434-7_9  0.558
2019 Lari A, Farzam F, Bensidoun P, Oeffinger M, Zenklusen D, Grunwald D, Montpetit B. Live-Cell Imaging of mRNP-NPC Interactions in Budding Yeast. Methods in Molecular Biology (Clifton, N.J.). 2038: 131-150. PMID 31407282 DOI: 10.1007/978-1-4939-9674-2_9  0.391
2018 Adivarahan S, Livingston N, Nicholson B, Rahman S, Wu B, Rissland OS, Zenklusen D. Spatial Organization of Single mRNPs at Different Stages of the Gene Expression Pathway. Molecular Cell. PMID 30415950 DOI: 10.1016/J.Molcel.2018.10.010  0.542
2018 Lessard F, Igelmann S, Trahan C, Huot G, Saint-Germain E, Mignacca L, Del Toro N, Lopes-Paciencia S, Le Calvé B, Montero M, Deschênes-Simard X, Bury M, Moiseeva O, Rowell MC, Zorca CE, ... Zenklusen D, et al. Senescence-associated ribosome biogenesis defects contributes to cell cycle arrest through the Rb pathway. Nature Cell Biology. PMID 29941930 DOI: 10.1038/S41556-018-0127-Y  0.762
2018 King BR, Samacoits A, Eisenhauer PL, Ziegler CM, Bruce EA, Zenklusen D, Zimmer C, Mueller F, Botten J. Visualization of arenavirus RNA species in individual cells by single-molecule fluorescence in situ hybridization (smFISH) suggests a model of cyclical infection and clearance during persistence. Journal of Virology. PMID 29643234 DOI: 10.1128/Jvi.02241-17  0.453
2018 Trcek T, Rahman S, Zenklusen D. Measuring mRNA Decay in Budding Yeast Using Single Molecule FISH. Methods in Molecular Biology (Clifton, N.J.). 1720: 35-54. PMID 29236250 DOI: 10.1007/978-1-4939-7540-2_4  0.799
2017 Scott DD, Trahan C, Zindy PJ, Aguilar LC, Delubac MY, Van Nostrand EL, Adivarahan S, Wei KE, Yeo GW, Zenklusen D, Oeffinger M. Nol12 is a multifunctional RNA binding protein at the nexus of RNA and DNA metabolism. Nucleic Acids Research. PMID 29069457 DOI: 10.1093/Nar/Gkx963  0.389
2017 King BR, Kellner S, Eisenhauer PL, Bruce EA, Ziegler CM, Zenklusen D, Botten JW. Visualization of the lymphocytic choriomeningitis mammarenavirus (LCMV) genome reveals the early endosome as a possible site for genome replication and viral particle pre-assembly. The Journal of General Virology. PMID 28949905 DOI: 10.1099/Jgv.0.000930  0.357
2016 Rahman S, Zorca CE, Traboulsi T, Noutahi E, Krause MR, Mader S, Zenklusen D. Single-cell profiling reveals that eRNA accumulation at enhancer-promoter loops is not required to sustain transcription. Nucleic Acids Research. PMID 27932455 DOI: 10.1093/Nar/Gkw1220  0.813
2016 Fernandez-Martinez J, Kim SJ, Shi Y, Upla P, Pellarin R, Gagnon M, Chemmama IE, Wang J, Nudelman I, Zhang W, Williams R, Rice WJ, Stokes DL, Zenklusen D, Chait BT, et al. Structure and Function of the Nuclear Pore Complex Cytoplasmic mRNA Export Platform. Cell. PMID 27839866 DOI: 10.1016/J.Cell.2016.10.028  0.404
2016 Bensidoun P, Raymond P, Oeffinger M, Zenklusen D. Imaging single mRNAs to study dynamics of mRNA export in the yeast Saccharomyces cerevisiae. Methods (San Diego, Calif.). 98: 104-14. PMID 26784711 DOI: 10.1016/J.Ymeth.2016.01.006  0.588
2015 Saroufim MA, Bensidoun P, Raymond P, Rahman S, Krause MR, Oeffinger M, Zenklusen D. The nuclear basket mediates perinuclear mRNA scanning in budding yeast. The Journal of Cell Biology. 211: 1131-40. PMID 26694838 DOI: 10.1083/Jcb.201503070  0.559
2015 Smith C, Lari A, Derrer CP, Ouwehand A, Rossouw A, Huisman M, Dange T, Hopman M, Joseph A, Zenklusen D, Weis K, Grunwald D, Montpetit B. In vivo single-particle imaging of nuclear mRNA export in budding yeast demonstrates an essential role for Mex67p. The Journal of Cell Biology. 211: 1121-30. PMID 26694837 DOI: 10.1083/Jcb.201503135  0.46
2015 Hocine S, Vera M, Zenklusen D, Singer RH. Promoter-Autonomous Functioning in a Controlled Environment using Single Molecule FISH. Scientific Reports. 5: 9934. PMID 26017315 DOI: 10.1038/Srep09934  0.778
2015 Zorca CE, Kim LK, Kim YJ, Krause MR, Zenklusen D, Spilianakis CG, Flavell RA. Myosin VI regulates gene pairing and transcriptional pause release in T cells. Proceedings of the National Academy of Sciences of the United States of America. 112: E1587-93. PMID 25770220 DOI: 10.1073/Pnas.1502461112  0.772
2013 Rahman S, Zenklusen D. Single-molecule resolution fluorescent in situ hybridization (smFISH) in the yeast S. cerevisiae. Methods in Molecular Biology (Clifton, N.J.). 1042: 33-46. PMID 23979998 DOI: 10.1007/978-1-62703-526-2_3  0.539
2013 Castelnuovo M, Rahman S, Guffanti E, Infantino V, Stutz F, Zenklusen D. Bimodal expression of PHO84 is modulated by early termination of antisense transcription. Nature Structural & Molecular Biology. 20: 851-8. PMID 23770821 DOI: 10.1038/Nsmb.2598  0.761
2013 Messier V, Zenklusen D, Michnick SW. A nutrient-responsive pathway that determines M phase timing through control of B-cyclin mRNA stability. Cell. 153: 1080-93. PMID 23706744 DOI: 10.1016/J.Cell.2013.04.035  0.435
2013 Hocine S, Raymond P, Zenklusen D, Chao JA, Singer RH. Single-molecule analysis of gene expression using two-color RNA labeling in live yeast. Nature Methods. 10: 119-21. PMID 23263691 DOI: 10.1038/Nmeth.2305  0.798
2012 Oeffinger M, Zenklusen D. To the pore and through the pore: a story of mRNA export kinetics. Biochimica Et Biophysica Acta. 1819: 494-506. PMID 22387213 DOI: 10.1016/J.Bbagrm.2012.02.011  0.543
2012 Trcek T, Chao JA, Larson DR, Park HY, Zenklusen D, Shenoy SM, Singer RH. Single-mRNA counting using fluorescent in situ hybridization in budding yeast. Nature Protocols. 7: 408-19. PMID 22301778 DOI: 10.1038/Nprot.2011.451  0.784
2011 Larson DR, Zenklusen D, Wu B, Chao JA, Singer RH. Real-time observation of transcription initiation and elongation on an endogenous yeast gene. Science (New York, N.Y.). 332: 475-8. PMID 21512033 DOI: 10.1126/Science.1202142  0.652
2011 Gandhi SJ, Zenklusen D, Lionnet T, Singer RH. Transcription of functionally related constitutive genes is not coordinated. Nature Structural & Molecular Biology. 18: 27-34. PMID 21131977 DOI: 10.1038/Nsmb.1934  0.758
2011 Powrie EA, Zenklusen D, Singer RH. A nucleoporin, Nup60p, affects the nuclear and cytoplasmic localization of ASH1 mRNA in S. cerevisiae. Rna (New York, N.Y.). 17: 134-44. PMID 21036941 DOI: 10.1261/Rna.1210411  0.787
2011 Silverman SJ, Petti AA, Slavov N, Parsons L, Briehof R, Thiberge SY, Zenklusen D, Gandhi SJ, Larson DR, Singer RH, Botstein D. Metabolic cycling in single yeast cells from unsynchronized steady-state populations limited on glucose or phosphate (Proceedings of the National Academy of Sciences of the United States of America (2010) 107, (6946-6951) 10.1073/pnas.1002422107) Proceedings of the National Academy of Sciences of the United States of America. 108: 12185. DOI: 10.1073/Pnas.1109536108  0.641
2010 Zenklusen D, Singer RH. Analyzing mRNA expression using single mRNA resolution fluorescent in situ hybridization. Methods in Enzymology. 470: 641-59. PMID 20946829 DOI: 10.1016/S0076-6879(10)70026-4  0.69
2010 Silverman SJ, Petti AA, Slavov N, Parsons L, Briehof R, Thiberge SY, Zenklusen D, Gandhi SJ, Larson DR, Singer RH, Botstein D. Metabolic cycling in single yeast cells from unsynchronized steady-state populations limited on glucose or phosphate. Proceedings of the National Academy of Sciences of the United States of America. 107: 6946-51. PMID 20335538 DOI: 10.1073/Pnas.1002422107  0.701
2009 Oeffinger M, Zenklusen D, Ferguson A, Wei KE, El Hage A, Tollervey D, Chait BT, Singer RH, Rout MP. Rrp17p is a eukaryotic exonuclease required for 5' end processing of Pre-60S ribosomal RNA. Molecular Cell. 36: 768-81. PMID 20005841 DOI: 10.1016/J.Molcel.2009.11.011  0.577
2009 Larson DR, Singer RH, Zenklusen D. A single molecule view of gene expression. Trends in Cell Biology. 19: 630-7. PMID 19819144 DOI: 10.1016/J.Tcb.2009.08.008  0.589
2009 Darzacq X, Yao J, Larson DR, Causse SZ, Bosanac L, de Turris V, Ruda VM, Lionnet T, Zenklusen D, Guglielmi B, Tjian R, Singer RH. Imaging transcription in living cells. Annual Review of Biophysics. 38: 173-96. PMID 19416065 DOI: 10.1146/Annurev.Biophys.050708.133728  0.716
2008 Zenklusen D, Larson DR, Singer RH. Single-RNA counting reveals alternative modes of gene expression in yeast. Nature Structural & Molecular Biology. 15: 1263-71. PMID 19011635 DOI: 10.1038/Nsmb.1514  0.662
2007 Wells AL, Condeelis JS, Singer RH, Zenklusen D. Imaging real-time gene expression in living systems with single-transcript resolution: construct design and imaging system setup. Csh Protocols. 2007: pdb.top28. PMID 21356986 DOI: 10.1101/Pdb.Top28  0.604
2007 Wells AL, Condeelis JS, Singer RH, Zenklusen D. Imaging Real-Time Gene Expression in Living Systems with Single-Transcript Resolution: Single mRNA Particle Tracking with ImageJ-Based Analysis. Csh Protocols. 2007: pdb.prot4872. PMID 21356980 DOI: 10.1101/Pdb.Prot4872  0.568
2007 Wells AL, Condeelis JS, Singer RH, Zenklusen D. Imaging real-time gene expression in living systems with single-transcript resolution: image analysis of single mRNA transcripts. Csh Protocols. 2007: pdb.prot4871. PMID 21356979 DOI: 10.1101/Pdb.Prot4871  0.582
2007 Zenklusen D, Wells AL, Condeelis JS, Singer RH. Imaging real-time gene expression in living yeast. Csh Protocols. 2007: pdb.prot4870. PMID 21356978 DOI: 10.1101/Pdb.Prot4870  0.594
2007 Wells AL, Condeelis JS, Singer RH, Zenklusen D. Imaging real-time gene expression in Mammalian cells with single-transcript resolution. Csh Protocols. 2007: pdb.prot4869. PMID 21356977 DOI: 10.1101/Pdb.Prot4869  0.638
2007 Dong S, Li C, Zenklusen D, Singer RH, Jacobson A, He F. YRA1 autoregulation requires nuclear export and cytoplasmic Edc3p-mediated degradation of its pre-mRNA. Molecular Cell. 25: 559-73. PMID 17317628 DOI: 10.1016/J.Molcel.2007.01.012  0.695
2005 Hüttelmaier S, Zenklusen D, Lederer M, Dictenberg J, Lorenz M, Meng X, Bassell GJ, Condeelis J, Singer RH. Spatial regulation of beta-actin translation by Src-dependent phosphorylation of ZBP1. Nature. 438: 512-5. PMID 16306994 DOI: 10.1038/Nature04115  0.729
2005 Vinciguerra P, Iglesias N, Camblong J, Zenklusen D, Stutz F. Perinuclear Mlp proteins downregulate gene expression in response to a defect in mRNA export. The Embo Journal. 24: 813-23. PMID 15692572 DOI: 10.1038/Sj.Emboj.7600527  0.776
2004 Niessing D, Hüttelmaier S, Zenklusen D, Singer RH, Burley SK. She2p is a novel RNA binding protein with a basic helical hairpin motif. Cell. 119: 491-502. PMID 15537539 DOI: 10.1016/J.Cell.2004.10.018  0.633
2004 Gu W, Deng Y, Zenklusen D, Singer RH. A new yeast PUF family protein, Puf6p, represses ASH1 mRNA translation and is required for its localization. Genes & Development. 18: 1452-65. PMID 15198983 DOI: 10.1101/Gad.1189004  0.753
2003 Darzacq X, Powrie E, Gu W, Singer RH, Zenklusen D. RNA asymmetric distribution and daughter/mother differentiation in yeast. Current Opinion in Microbiology. 6: 614-20. PMID 14662358 DOI: 10.1016/J.Mib.2003.10.005  0.781
2002 Zenklusen D, Vinciguerra P, Wyss JC, Stutz F. Stable mRNP formation and export require cotranscriptional recruitment of the mRNA export factors Yra1p and Sub2p by Hpr1p Molecular and Cellular Biology. 22: 8241-8253. PMID 12417727 DOI: 10.1128/Mcb.22.23.8241-8253.2002  0.785
2002 Hammell CM, Gross S, Zenklusen D, Heath CV, Stutz F, Moore C, Cole CN. Coupling of termination, 3′ processing, and mRNA export Molecular and Cellular Biology. 22: 6441-6457. PMID 12192043 DOI: 10.1128/Mcb.22.18.6441-6457.2002  0.748
2001 Zenklusen D, Stutz F. Nuclear export of mRNA. Febs Letters. 498: 150-6. PMID 11412847 DOI: 10.1016/S0014-5793(01)02482-6  0.742
2001 Zenklusen D, Vinciguerra P, Strahm Y, Stutz F. The yeast hnRNP-Like proteins Yra1p and Yra2p participate in mRNA export through interaction with Mex67p. Molecular and Cellular Biology. 21: 4219-32. PMID 11390651 DOI: 10.1128/Mcb.21.13.4219-4232.2001  0.735
2000 Martin F, Michel F, Zenklusen D, Müller B, Schümperli D. Positive and negative mutant selection in the human histone hairpin-binding protein using the yeast three-hybrid system. Nucleic Acids Research. 28: 1594-603. PMID 10710426 DOI: 10.1093/Nar/28.7.1594  0.344
1999 Strahm Y, Fahrenkrog B, Zenklusen D, Rychner E, Kantor J, Rosbash M, Stutz F. The RNA export factor Gle1p is located on the cytoplasmic fibrils of the NPC and physically interacts with the FG-nucleoporin Rip1p, the DEAD-box protein Rat8p/Dbp5p and a new protein Ymr255p Embo Journal. 18: 5761-5777. PMID 10610322 DOI: 10.1093/Emboj/18.20.5761  0.76
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