Gene W. Yeo, PhD, MBA - Publications

Affiliations: 
Cellular and Molecular Medicine University of California, San Diego, La Jolla, CA 
Area:
RNA processing, neurodevelopment, neurodegeneration, computational biology
Website:
http://yeolab.ucsd.edu/yeolab/Home.html

95 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Xiao R, Chen JY, Liang Z, Luo D, Chen G, Lu ZJ, Chen Y, Zhou B, Li H, Du X, Yang Y, San M, Wei X, Liu W, Lécuyer E, ... ... Yeo GW, et al. Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription. Cell. 178: 107-121.e18. PMID 31251911 DOI: 10.1016/j.cell.2019.06.001  0.56
2019 van den Hurk M, Erwin JA, Yeo GW, Gage FH, Bardy C. Corrigendum: Patch-Seq Protocol to Analyze the Electrophysiology, Morphology and Transcriptome of Whole Single Neurons Derived From Human Pluripotent Stem Cells. Frontiers in Molecular Neuroscience. 12: 150. PMID 31244603 DOI: 10.3389/fnmol.2019.00150  0.76
2019 Sommer A, Marxreiter F, Krach F, Fadler T, Grosch J, Maroni M, Graef D, Eberhardt E, Riemenschneider MJ, Yeo GW, Kohl Z, Xiang W, Gage FH, Winkler J, Prots I, et al. Th17 Lymphocytes Induce Neuronal Cell Death in a Human iPSC-Based Model of Parkinson's Disease. Cell Stem Cell. 24: 1006. PMID 31173705 DOI: 10.1016/j.stem.2019.04.019  0.76
2019 Yang EW, Bahn JH, Hsiao EY, Tan BX, Sun Y, Fu T, Zhou B, Van Nostrand EL, Pratt GA, Freese P, Wei X, Quinones-Valdez G, Urban AE, Graveley BR, Burge CB, ... Yeo GW, et al. Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA. Nature Communications. 10: 1338. PMID 30902979 DOI: 10.1038/s41467-019-09292-w  0.56
2019 Ling SC, Dastidar SG, Tokunaga S, Ho WY, Lim K, Ilieva H, Parone PA, Tyan SH, Tse TM, Chang JC, Platoshyn O, Bui NB, Bui A, Vetto A, Sun S, ... ... Yeo GW, et al. Overriding FUS autoregulation in mice triggers gain-of-toxic dysfunctions in RNA metabolism and autophagy-lysosome axis. Elife. 8. PMID 30747709 DOI: 10.7554/eLife.40811  0.76
2018 Yee B, Pratt G, Graveley B, Van Nostrand E, Yeo G. RBP-Maps enables robust generation of splicing regulatory maps. Rna (New York, N.Y.). PMID 30413564 DOI: 10.1261/rna.069237.118  0.56
2018 van den Hurk M, Erwin JA, Yeo GW, Gage FH, Bardy C. Patch-Seq Protocol to Analyze the Electrophysiology, Morphology and Transcriptome of Whole Single Neurons Derived From Human Pluripotent Stem Cells. Frontiers in Molecular Neuroscience. 11: 261. PMID 30147644 DOI: 10.3389/fnmol.2018.00261  0.76
2018 Sommer A, Maxreiter F, Krach F, Fadler T, Grosch J, Maroni M, Graef D, Eberhardt E, Riemenschneider MJ, Yeo GW, Kohl Z, Xiang W, Gage FH, Winkler J, Prots I, et al. Th17 Lymphocytes Induce Neuronal Cell Death in a Human iPSC-Based Model of Parkinson's Disease. Cell Stem Cell. 23: 123-131.e6. PMID 29979986 DOI: 10.1016/j.stem.2018.06.015  0.76
2018 Dominguez D, Freese P, Alexis MS, Su A, Hochman M, Palden T, Bazile C, Lambert NJ, Van Nostrand EL, Pratt GA, Yeo GW, Graveley BR, Burge CB. Sequence, Structure, and Context Preferences of Human RNA Binding Proteins. Molecular Cell. 70: 854-867.e9. PMID 29883606 DOI: 10.1016/j.molcel.2018.05.001  0.56
2018 Krach F, Batra R, C Wheeler E, Vu AQ, Wang R, Hutt K, Rabin SJ, Baughn MW, Libby RT, Diaz-Garcia S, Stauffer J, Pirie E, Saberi S, Rodriguez M, Madrigal AA, ... ... Yeo GW, et al. Transcriptome-pathology correlation identifies interplay between TDP-43 and the expression of its kinase CK1E in sporadic ALS. Acta Neuropathologica. PMID 29881994 DOI: 10.1007/s00401-018-1870-7  0.44
2017 Jiang L, Shao C, Wu QJ, Chen G, Zhou J, Yang B, Li H, Gou LT, Zhang Y, Wang Y, Yeo GW, Zhou Y, Fu XD. NEAT1 scaffolds RNA-binding proteins and the Microprocessor to globally enhance pri-miRNA processing. Nature Structural & Molecular Biology. PMID 28846091 DOI: 10.1038/nsmb.3455  0.56
2017 Batra R, Nelles DA, Pirie E, Blue SM, Marina RJ, Wang H, Chaim IA, Thomas JD, Zhang N, Nguyen V, Aigner S, Markmiller S, Xia G, Corbett KD, Swanson MS, ... Yeo GW, et al. Elimination of Toxic Microsatellite Repeat Expansion RNA by RNA-Targeting Cas9. Cell. PMID 28803727 DOI: 10.1016/j.cell.2017.07.010  0.52
2017 Song Y, Botvinnik OB, Lovci MT, Kakaradov B, Liu P, Xu JL, Yeo GW. Single-Cell Alternative Splicing Analysis with Expedition Reveals Splicing Dynamics during Neuron Differentiation. Molecular Cell. PMID 28673540 DOI: 10.1016/j.molcel.2017.06.003  0.4
2017 Kakaradov B, Arsenio J, Widjaja CE, He Z, Aigner S, Metz PJ, Yu B, Wehrens EJ, Lopez J, Kim SH, Zuniga EI, Goldrath AW, Chang JT, Yeo GW. Early transcriptional and epigenetic regulation of CD8(+) T cell differentiation revealed by single-cell RNA sequencing. Nature Immunology. PMID 28218746 DOI: 10.1038/ni.3688  0.52
2016 Batra R, Stark TJ, Clark E, Belzile JP, Wheeler EC, Yee BA, Huang H, Gelboin-Burkhart C, Huelga SC, Aigner S, Roberts BT, Bos TJ, Sathe S, Donohue JP, Rigo F, ... ... Yeo GW, et al. RNA-binding protein CPEB1 remodels host and viral RNA landscapes. Nature Structural & Molecular Biology. PMID 27775709 DOI: 10.1038/nsmb.3310  0.76
2016 Martinez FJ, Pratt GA, Van Nostrand EL, Batra R, Huelga SC, Kapeli K, Freese P, Chun SJ, Ling K, Gelboin-Burkhart C, Fijany L, Wang HC, Nussbacher JK, Broski SM, Kim HJ, ... ... Yeo GW, et al. Protein-RNA Networks Regulated by Normal and ALS-Associated Mutant HNRNPA2B1 in the Nervous System. Neuron. PMID 27773581 DOI: 10.1016/j.neuron.2016.09.050  0.56
2016 Grabole N, Zhang JD, Aigner S, Ruderisch N, Costa V, Weber FC, Theron M, Berntenis N, Spleiss O, Ebeling M, Yeo GW, Jagasia R, Kiialainen A. Genomic analysis of the molecular neuropathology of tuberous sclerosis using a human stem cell model. Genome Medicine. 8: 94. PMID 27655340 DOI: 10.1186/s13073-016-0347-3  0.52
2016 Kapeli K, Pratt GA, Vu AQ, Hutt KR, Martinez FJ, Sundararaman B, Batra R, Freese P, Lambert NJ, Huelga SC, Chun SJ, Liang TY, Chang J, Donohue JP, Shiue L, ... ... Yeo GW, et al. Distinct and shared functions of ALS-associated proteins TDP-43, FUS and TAF15 revealed by multisystem analyses. Nature Communications. 7: 12143. PMID 27378374 DOI: 10.1038/ncomms12143  0.76
2016 Bos TJ, Nussbacher JK, Aigner S, Yeo GW. Tethered Function Assays as Tools to Elucidate the Molecular Roles of RNA-Binding Proteins. Advances in Experimental Medicine and Biology. 907: 61-88. PMID 27256382 DOI: 10.1007/978-3-319-29073-7_3  0.52
2016 Conway AE, Van Nostrand EL, Pratt GA, Aigner S, Wilbert ML, Sundararaman B, Freese P, Lambert NJ, Sathe S, Liang TY, Essex A, Landais S, Burge CB, Jones DL, Yeo GW. Enhanced CLIP Uncovers IMP Protein-RNA Targets in Human Pluripotent Stem Cells Important for Cell Adhesion and Survival. Cell Reports. PMID 27068461 DOI: 10.1016/j.celrep.2016.03.052  0.76
2016 Gerson-Gurwitz A, Wang S, Sathe S, Green R, Yeo GW, Oegema K, Desai A. A Small RNA-Catalytic Argonaute Pathway Tunes Germline Transcript Levels to Ensure Embryonic Divisions. Cell. PMID 27020753 DOI: 10.1016/j.cell.2016.02.040  0.76
2016 Van Nostrand EL, Pratt GA, Shishkin AA, Gelboin-Burkhart C, Fang MY, Sundararaman B, Blue SM, Nguyen TB, Surka C, Elkins K, Stanton R, Rigo F, Guttman M, Yeo GW. Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP). Nature Methods. PMID 27018577 DOI: 10.1038/nmeth.3810  0.76
2016 Sundararaman B, Zhan L, Blue SM, Stanton R, Elkins K, Olson S, Wei X, Van Nostrand EL, Pratt GA, Huelga SC, Smalec BM, Wang X, Hong EL, Davidson JM, Lécuyer E, ... ... Yeo GW, et al. Resources for the Comprehensive Discovery of Functional RNA Elements. Molecular Cell. 61: 903-913. PMID 26990993 DOI: 10.1016/j.molcel.2016.02.012  0.76
2016 Tan FE, Yeo GW. Blurred Boundaries: The RNA Binding Protein Lin28A Is Also an Epigenetic Regulator. Molecular Cell. 61: 1-2. PMID 26748607 DOI: 10.1016/j.molcel.2015.12.018  0.76
2015 Hung T, Pratt G, Sundararaman B, Townsend MJ, Chaivorapol C, Bhangale T, Graham RR, Ortmann W, Criswell LA, Yeo G, Behrens TW. The Ro60 autoantigen binds endogenous retroelements and regulates inflammatory gene expression. Science (New York, N.Y.). PMID 26382853 DOI: 10.1126/science.aac7442  0.76
2015 Arsenio J, Kakaradov B, Metz PJ, Yeo GW, Chang JT. Reply to: "CD8(+) T cell diversification by asymmetric cell division". Nature Immunology. 16: 893-4. PMID 26287585 DOI: 10.1038/ni.3234  0.76
2015 Lee SR, Pratt GA, Martinez FJ, Yeo GW, Lykke-Andersen J. Target Discrimination in Nonsense-Mediated mRNA Decay Requires Upf1 ATPase Activity. Molecular Cell. 59: 413-25. PMID 26253027 DOI: 10.1016/j.molcel.2015.06.036  0.76
2015 Nelles DA, Fang MY, Aigner S, Yeo GW. Applications of Cas9 as an RNA-programmed RNA-binding protein. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 37: 732-9. PMID 25880497 DOI: 10.1002/bies.201500001  0.76
2015 Nussbacher JK, Batra R, Lagier-Tourenne C, Yeo GW. RNA-binding proteins in neurodegeneration: Seq and you shall receive. Trends in Neurosciences. 38: 226-36. PMID 25765321 DOI: 10.1016/j.tins.2015.02.003  0.76
2015 Sun S, Ling SC, Qiu J, Albuquerque CP, Zhou Y, Tokunaga S, Li H, Qiu H, Bui A, Yeo GW, Huang EJ, Eggan K, Zhou H, Fu XD, Lagier-Tourenne C, et al. ALS-causative mutations in FUS/TLS confer gain and loss of function by altered association with SMN and U1-snRNP. Nature Communications. 6: 6171. PMID 25625564 DOI: 10.1038/ncomms7171  0.56
2015 Metz PJ, Arsenio J, Kakaradov B, Kim SH, Remedios KA, Oakley K, Akimoto K, Ohno S, Yeo GW, Chang JT. Regulation of asymmetric division and CD8+ T lymphocyte fate specification by protein kinase Cζ and protein kinase Cλ/ι. Journal of Immunology (Baltimore, Md. : 1950). 194: 2249-59. PMID 25617472 DOI: 10.4049/jimmunol.1401652  0.36
2014 Rush AM, Nelles DA, Blum AP, Barnhill SA, Tatro ET, Yeo GW, Gianneschi NC. Intracellular mRNA regulation with self-assembled locked nucleic acid polymer nanoparticles. Journal of the American Chemical Society. 136: 7615-8. PMID 24827740 DOI: 10.1021/ja503598z  0.76
2014 Van Wynsberghe PM, Finnegan EF, Stark T, Angelus EP, Homan KE, Yeo GW, Pasquinelli AE. The Period protein homolog LIN-42 negatively regulates microRNA biogenesis in C. elegans. Developmental Biology. 390: 126-35. PMID 24699545 DOI: 10.1016/j.ydbio.2014.03.017  0.76
2014 Arsenio J, Kakaradov B, Metz PJ, Kim SH, Yeo GW, Chang JT. Early specification of CD8+ T lymphocyte fates during adaptive immunity revealed by single-cell gene-expression analyses. Nature Immunology. 15: 365-72. PMID 24584088 DOI: 10.1038/ni.2842  0.76
2014 Washburn MC, Kakaradov B, Sundararaman B, Wheeler E, Hoon S, Yeo GW, Hundley HA. The dsRBP and inactive editor ADR-1 utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome. Cell Reports. 6: 599-607. PMID 24508457 DOI: 10.1016/j.celrep.2014.01.011  0.76
2014 Belzile JP, Stark TJ, Yeo GW, Spector DH. Human cytomegalovirus infection of human embryonic stem cell-derived primitive neural stem cells is restricted at several steps but leads to the persistence of viral DNA. Journal of Virology. 88: 4021-39. PMID 24453373 DOI: 10.1128/JVI.03492-13  0.76
2013 Lovci MT, Ghanem D, Marr H, Arnold J, Gee S, Parra M, Liang TY, Stark TJ, Gehman LT, Hoon S, Massirer KB, Pratt GA, Black DL, Gray JW, Conboy JG, ... Yeo GW, et al. Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges. Nature Structural & Molecular Biology. 20: 1434-42. PMID 24213538 DOI: 10.1038/nsmb.2699  0.76
2013 Cai W, Albini S, Wei K, Willems E, Guzzo RM, Tsuda M, Giordani L, Spiering S, Kurian L, Yeo GW, Puri PL, Mercola M. Coordinate Nodal and BMP inhibition directs Baf60c-dependent cardiomyocyte commitment. Genes & Development. 27: 2332-44. PMID 24186978 DOI: 10.1101/gad.225144.113  0.76
2013 Lagier-Tourenne C, Baughn M, Rigo F, Sun S, Liu P, Li HR, Jiang J, Watt AT, Chun S, Katz M, Qiu J, Sun Y, Ling SC, Zhu Q, Polymenidou M, ... ... Yeo GW, et al. Targeted degradation of sense and antisense C9orf72 RNA foci as therapy for ALS and frontotemporal degeneration. Proceedings of the National Academy of Sciences of the United States of America. 110: E4530-9. PMID 24170860 DOI: 10.1073/pnas.1318835110  0.76
2013 Marchetto MC, Narvaiza I, Denli AM, Benner C, Lazzarini TA, Nathanson JL, Paquola AC, Desai KN, Herai RH, Weitzman MD, Yeo GW, Muotri AR, Gage FH. Differential L1 regulation in pluripotent stem cells of humans and apes. Nature. 503: 525-9. PMID 24153179 DOI: 10.1038/nature12686  0.76
2013 Verma SK, Deshmukh V, Liu P, Nutter CA, Espejo R, Hung ML, Wang GS, Yeo GW, Kuyumcu-Martinez MN. Reactivation of fetal splicing programs in diabetic hearts is mediated by protein kinase C signaling. The Journal of Biological Chemistry. 288: 35372-86. PMID 24151077 DOI: 10.1074/jbc.M113.507426  0.76
2013 Pandit S, Zhou Y, Shiue L, Coutinho-Mansfield G, Li H, Qiu J, Huang J, Yeo GW, Ares M, Fu XD. Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing. Molecular Cell. 50: 223-35. PMID 23562324 DOI: 10.1016/j.molcel.2013.03.001  0.76
2013 Hunter SE, Finnegan EF, Zisoulis DG, Lovci MT, Melnik-Martinez KV, Yeo GW, Pasquinelli AE. Functional genomic analysis of the let-7 regulatory network in Caenorhabditis elegans. Plos Genetics. 9: e1003353. PMID 23516374 DOI: 10.1371/journal.pgen.1003353  0.76
2013 Arnold ES, Ling SC, Huelga SC, Lagier-Tourenne C, Polymenidou M, Ditsworth D, Kordasiewicz HB, McAlonis-Downes M, Platoshyn O, Parone PA, Da Cruz S, Clutario KM, Swing D, Tessarollo L, Marsala M, ... ... Yeo GW, et al. ALS-linked TDP-43 mutations produce aberrant RNA splicing and adult-onset motor neuron disease without aggregation or loss of nuclear TDP-43. Proceedings of the National Academy of Sciences of the United States of America. 110: E736-45. PMID 23382207 DOI: 10.1073/pnas.1222809110  0.76
2012 Vollmers C, Schmitz RJ, Nathanson J, Yeo G, Ecker JR, Panda S. Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome Cell Metabolism. 16: 833-845. PMID 23217262 DOI: 10.1016/j.cmet.2012.11.004  0.76
2012 Kapeli K, Yeo GW. Genome-wide approaches to dissect the roles of RNA binding proteins in translational control: implications for neurological diseases. Frontiers in Neuroscience. 6: 144. PMID 23060744 DOI: 10.3389/fnins.2012.00144  0.76
2012 Lagier-Tourenne C, Polymenidou M, Hutt KR, Vu AQ, Baughn M, Huelga SC, Clutario KM, Ling SC, Liang TY, Mazur C, Wancewicz E, Kim AS, Watt A, Freier S, Hicks GG, ... ... Yeo GW, et al. Divergent roles of ALS-linked proteins FUS/TLS and TDP-43 intersect in processing long pre-mRNAs. Nature Neuroscience. 15: 1488-97. PMID 23023293 DOI: 10.1038/nn.3230  0.76
2012 Dembowski JA, An P, Scoulos-Hanson M, Yeo G, Han J, Fu XD, Grabowski PJ. Alternative Splicing of a Novel Inducible Exon Diversifies the CASK Guanylate Kinase Domain. Journal of Nucleic Acids. 2012: 816237. PMID 23008758 DOI: 10.1155/2012/816237  0.76
2012 Wilbert ML, Huelga SC, Kapeli K, Stark TJ, Liang TY, Chen SX, Yan BY, Nathanson JL, Hutt KR, Lovci MT, Kazan H, Vu AQ, Massirer KB, Morris Q, Hoon S, ... Yeo GW, et al. LIN28 binds messenger RNAs at GGAGA motifs and regulates splicing factor abundance. Molecular Cell. 48: 195-206. PMID 22959275 DOI: 10.1016/j.molcel.2012.08.004  0.76
2012 Zhu W, Kuo D, Nathanson J, Satoh A, Pao GM, Yeo GW, Bryant SV, Voss SR, Gardiner DM, Hunter T. Retrotransposon long interspersed nucleotide element-1 (LINE-1) is activated during salamander limb regeneration. Development, Growth & Differentiation. 54: 673-85. PMID 22913491 DOI: 10.1111/j.1440-169X.2012.01368.x  0.76
2012 Andrade LN, Nathanson JL, Yeo GW, Menck CF, Muotri AR. Evidence for premature aging due to oxidative stress in iPSCs from Cockayne syndrome. Human Molecular Genetics. 21: 3825-34. PMID 22661500 DOI: 10.1093/hmg/dds211  0.76
2012 Huelga SC, Vu AQ, Arnold JD, Liang TY, Liu PP, Yan BY, Donohue JP, Shiue L, Hoon S, Brenner S, Ares M, Yeo GW. Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins. Cell Reports. 1: 167-78. PMID 22574288 DOI: 10.1016/j.celrep.2012.02.001  0.76
2012 Polymenidou M, Lagier-Tourenne C, Hutt KR, Bennett CF, Cleveland DW, Yeo GW. Misregulated RNA processing in amyotrophic lateral sclerosis. Brain Research. 1462: 3-15. PMID 22444279 DOI: 10.1016/j.brainres.2012.02.059  0.76
2012 Stark TJ, Arnold JD, Spector DH, Yeo GW. High-resolution profiling and analysis of viral and host small RNAs during human cytomegalovirus infection. Journal of Virology. 86: 226-35. PMID 22013051 DOI: 10.1128/JVI.05903-11  0.76
2012 Huelga SC, Yeo GW. Genomics of alternative splicing in stem cells Computational Biology of Embryonic Stem Cells. 147-160. DOI: 10.2174/978160805025311201010147  0.76
2011 Zisoulis DG, Yeo GW, Pasquinelli AE. Comprehensive identification of miRNA target sites in live animals. Methods in Molecular Biology (Clifton, N.J.). 732: 169-85. PMID 21431713 DOI: 10.1007/978-1-61779-083-6_13  0.76
2011 Lovci MT, Li HR, Fu XD, Yeo GW. RNA-seq analysis of gene expression and alternative splicing by double-random priming strategy. Methods in Molecular Biology (Clifton, N.J.). 729: 247-55. PMID 21365495 DOI: 10.1007/978-1-61779-065-2_16  0.76
2011 Polymenidou M, Lagier-Tourenne C, Hutt KR, Huelga SC, Moran J, Liang TY, Ling SC, Sun E, Wancewicz E, Mazur C, Kordasiewicz H, Sedaghat Y, Donohue JP, Shiue L, Bennett CF, ... Yeo GW, et al. Long pre-mRNA depletion and RNA missplicing contribute to neuronal vulnerability from loss of TDP-43. Nature Neuroscience. 14: 459-68. PMID 21358643 DOI: 10.1038/nn.2779  0.76
2011 Van Wynsberghe PM, Kai ZS, Massirer KB, Burton VH, Yeo GW, Pasquinelli AE. LIN-28 co-transcriptionally binds primary let-7 to regulate miRNA maturation in Caenorhabditis elegans. Nature Structural & Molecular Biology. 18: 302-8. PMID 21297634 DOI: 10.1038/nsmb.1986  0.76
2011 Wilbert ML, Yeo GW. Genome-wide approaches in the study of microRNA biology. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 3: 491-512. PMID 21197653 DOI: 10.1002/wsbm.128  0.76
2010 Nelles DA, Yeo GW. Alternative splicing in stem cell self-renewal and diferentiation. Advances in Experimental Medicine and Biology. 695: 92-104. PMID 21222201 DOI: 10.1007/978-1-4419-7037-4_7  0.76
2010 Garmire LX, Shen Z, Briggs S, Yeo G, Subramaniam S, Glass C. Regulatory network of microRNAs in RAW 264.7 macrophage cells. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2010: 6198-201. PMID 21097158 DOI: 10.1109/IEMBS.2010.5627742  0.76
2010 Muotri AR, Marchetto MC, Coufal NG, Oefner R, Yeo G, Nakashima K, Gage FH. L1 retrotransposition in neurons is modulated by MeCP2. Nature. 468: 443-6. PMID 21085180 DOI: 10.1038/nature09544  0.76
2010 Marchetto MC, Carromeu C, Acab A, Yu D, Yeo GW, Mu Y, Chen G, Gage FH, Muotri AR. A model for neural development and treatment of Rett syndrome using human induced pluripotent stem cells. Cell. 143: 527-39. PMID 21074045 DOI: 10.1016/j.cell.2010.10.016  0.76
2010 Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW. Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans. Nature Structural & Molecular Biology. 17: 173-9. PMID 20062054 DOI: 10.1038/nsmb.1745  0.76
2010 Hinton A, Afrikanova I, Wilson M, King CC, Maurer B, Yeo GW, Hayek A, Pasquinelli AE. A distinct microRNA signature for definitive endoderm derived from human embryonic stem cells. Stem Cells and Development. 19: 797-807. PMID 19807270 DOI: 10.1089/scd.2009.0224  0.76
2010 Aigner S, Yeo GW. Terminal differentiation: REST Encyclopedia of Neuroscience. 921-927. DOI: 10.1016/B978-008045046-9.01030-5  0.76
2009 Xue Y, Zhou Y, Wu T, Zhu T, Ji X, Kwon YS, Zhang C, Yeo G, Black DL, Sun H, Fu XD, Zhang Y. Genome-wide analysis of PTB-RNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping. Molecular Cell. 36: 996-1006. PMID 20064465 DOI: 10.1016/j.molcel.2009.12.003  0.76
2009 Marchetto MC, Yeo GW, Kainohana O, Marsala M, Gage FH, Muotri AR. Transcriptional signature and memory retention of human-induced pluripotent stem cells. Plos One. 4: e7076. PMID 19763270 DOI: 10.1371/journal.pone.0007076  0.76
2009 Kuwabara T, Hsieh J, Muotri A, Yeo G, Warashina M, Lie DC, Moore L, Nakashima K, Asashima M, Gage FH. Wnt-mediated activation of NeuroD1 and retro-elements during adult neurogenesis. Nature Neuroscience. 12: 1097-105. PMID 19701198 DOI: 10.1038/nn.2360  0.76
2009 Coufal NG, Garcia-Perez JL, Peng GE, Yeo GW, Mu Y, Lovci MT, Morell M, O'Shea KS, Moran JV, Gage FH. L1 retrotransposition in human neural progenitor cells. Nature. 460: 1127-31. PMID 19657334 DOI: 10.1038/nature08248  0.76
2009 Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR. Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea. Rna (New York, N.Y.). 15: 1483-91. PMID 19553344 DOI: 10.1261/rna.1702009  0.76
2009 Thuret S, Toni N, Aigner S, Yeo GW, Gage FH. Hippocampus-dependent learning is associated with adult neurogenesis in MRL/MpJ mice. Hippocampus. 19: 658-69. PMID 19140178 DOI: 10.1002/hipo.20550  0.76
2009 Yeo GW, Coufal NG, Liang TY, Peng GE, Fu XD, Gage FH. An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells. Nature Structural & Molecular Biology. 16: 130-7. PMID 19136955 DOI: 10.1038/nsmb.1545  0.76
2008 Li H, Lovci MT, Kwon YS, Rosenfeld MG, Fu XD, Yeo GW. Determination of tag density required for digital transcriptome analysis: application to an androgen-sensitive prostate cancer model. Proceedings of the National Academy of Sciences of the United States of America. 105: 20179-84. PMID 19088194 DOI: 10.1073/pnas.0807121105  0.76
2008 Seila AC, Calabrese JM, Levine SS, Yeo GW, Rahl PB, Flynn RA, Young RA, Sharp PA. Divergent transcription from active promoters. Science (New York, N.Y.). 322: 1849-51. PMID 19056940 DOI: 10.1126/science.1162253  0.76
2008 Yeo GW, Coufal N, Aigner S, Winner B, Scolnick JA, Marchetto MC, Muotri AR, Carson C, Gage FH. Multiple layers of molecular controls modulate self-renewal and neuronal lineage specification of embryonic stem cells. Human Molecular Genetics. 17: R67-75. PMID 18632700 DOI: 10.1093/hmg/ddn065  0.76
2008 Palakodeti D, Smielewska M, Lu YC, Yeo GW, Graveley BR. The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians. Rna (New York, N.Y.). 14: 1174-86. PMID 18456843 DOI: 10.1261/rna.1085008  0.76
2008 Zimmerman AM, Yeo G, Howe K, Maddox BJ, Steiner LA. Immunoglobulin light chain (IgL) genes in zebrafish: Genomic configurations and inversional rearrangements between (VL-JL-CL) gene clusters Developmental and Comparative Immunology. 32: 421-434. PMID 18022691 DOI: 10.1016/j.dci.2007.08.005  0.76
2007 Olson S, Blanchette M, Park J, Savva Y, Yeo GW, Yeakley JM, Rio DC, Graveley BR. A regulator of Dscam mutually exclusive splicing fidelity. Nature Structural & Molecular Biology. 14: 1134-40. PMID 21188797 DOI: 10.1038/nsmb1339  0.76
2007 Calabrese JM, Seila AC, Yeo GW, Sharp PA. RNA sequence analysis defines Dicer's role in mouse embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America. 104: 18097-102. PMID 17989215 DOI: 10.1073/pnas.0709193104  0.76
2007 Yeo GW, Xu X, Liang TY, Muotri AR, Carson CT, Coufal NG, Gage FH. Alternative splicing events identified in human embryonic stem cells and neural progenitors. Plos Computational Biology. 3: 1951-67. PMID 17967047 DOI: 10.1371/journal.pcbi.0030196  0.76
2007 van Praag H, Lucero MJ, Yeo GW, Stecker K, Heivand N, Zhao C, Yip E, Afanador M, Schroeter H, Hammerstone J, Gage FH. Plant-derived flavanol (-)epicatechin enhances angiogenesis and retention of spatial memory in mice. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 27: 5869-78. PMID 17537957 DOI: 10.1523/JNEUROSCI.0914-07.2007  0.76
2007 Yeo GW, Van Nostrand EL, Nostrand EL, Liang TY. Discovery and analysis of evolutionarily conserved intronic splicing regulatory elements. Plos Genetics. 3: e85. PMID 17530930 DOI: 10.1371/journal.pgen.0030085  0.76
2007 Calabrese JM, Seila AC, Yeo GW, Sharp PA. RNA sequence analysis defines Dicer's role in mouse embryonic stem cells (Proceedings of the National Academy of Science of the United States of America (November 13, 2007) 104, 46, (18097-18102) DOI: 10.1073/pnas.0709193104) Proceedings of the National Academy of Sciences of the United States of America. 104: 21021. DOI: 10.1073/pnas.0711071105  0.76
2006 Stadler MB, Shomron N, Yeo GW, Schneider A, Xiao X, Burge CB. Inference of splicing regulatory activities by sequence neighborhood analysis. Plos Genetics. 2: e191. PMID 17121466 DOI: 10.1371/journal.pgen.0020191  0.76
2006 Cao X, Yeo G, Muotri AR, Kuwabara T, Gage FH. Noncoding RNAs in the mammalian central nervous system. Annual Review of Neuroscience. 29: 77-103. PMID 16776580 DOI: 10.1146/annurev.neuro.29.051605.112839  0.76
2005 Han K, Yeo G, An P, Burge CB, Grabowski PJ. A combinatorial code for splicing silencing: UAGG and GGGG motifs. Plos Biology.. 3: e158. PMID 15828859 DOI: 10.1371/journal.pbio.0030158  0.76
2005 Yeo GW, Van Nostrand E, Holste D, Poggio T, Burge CB. Identification and analysis of alternative splicing events conserved in human and mouse. Proceedings of the National Academy of Sciences of the United States of America. 102: 2850-5. PMID 15708978 DOI: 10.1073/pnas.0409742102  0.76
2004 Wang Z, Rolish ME, Yeo G, Tung V, Mawson M, Burge CB. Systematic identification and analysis of exonic splicing silencers Cell. 119: 831-845. PMID 15607979 DOI: 10.1016/j.cell.2004.11.010  0.76
2004 Yeo G, Hoon S, Venkatesh B, Burge CB. Variation in sequence and organization of splicing regulatory elements in vertebrate genes Proceedings of the National Academy of Sciences of the United States of America. 101: 15700-15705. PMID 15505203 DOI: 10.1073/pnas.0404901101  0.76
2004 Yeo G, Holste D, Kreiman G, Burge CB. Variation in alternative splicing across human tissues. Genome Biology. 5: R74. PMID 15461793 DOI: 10.1186/gb-2004-5-10-r74  0.76
2004 Yeo G, Burge CB. Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals Journal of Computational Biology. 11: 377-394. PMID 15285897 DOI: 10.1089/1066527041410418  0.76
2004 Fairbrother WG, Yeo GW, Yeh R, Goldstein P, Mawson M, Sharp PA, Burge CB. RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons. Nucleic Acids Research. 32: W187-90. PMID 15215377 DOI: 10.1093/nar/gkh393  0.76
2004 Eng L, Coutinho G, Nahas S, Yeo G, Tanouye R, Babaei M, Dörk T, Burge C, Gatti RA. Nonclassical splicing mutations in the coding and noncoding regions of the ATM Gene: maximum entropy estimates of splice junction strengths. Human Mutation. 23: 67-76. PMID 14695534 DOI: 10.1002/humu.10295  0.76
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