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Anna-Sapfo Malaspinas

Affiliations: 
2011 Integrative Biology University of California, Berkeley, Berkeley, CA, United States 
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"Anna-Sapfo Malaspinas"
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Parents

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Montgomery Slatkin grad student 2011 UC Berkeley
 (Population Genetics of Ancient and Modern DNA.)

Children

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Bárbara Mota grad student 2019- University of Lausanne and Swiss Institute of Bioinformatics
Lucas Anchieri grad student 2020- University of Lausanne and Swiss Institute of Bioinformatics
Davide Bozzi grad student 2021- University of Lausanne and Swiss Institute of Bioinformatics
Théo Cavinato grad student 2022- University of Lausanne and Swiss Institute of Bioinformatics
Carlos S. Reyna-Blanco grad student 2016-2018 University of Bern
Jyoti Dalal grad student 2018-2019 University of Lausanne and Swiss Institute of Bioinformatics
J. Víctor Moreno-Mayar grad student 2019-2019 University of Lausanne and Swiss Institute of Bioinformatics
Yami O. Arizmendi-Cárdenas grad student 2018-2021 University of Lausanne and Swiss Institute of Bioinformatics
Diana I. Cruz-Dávalos grad student 2016-2023 University of Lausanne and Swiss Institute of Bioinformatics
Samuel Neuenschwander post-doc 2016- University of Lausanne and Swiss Institute of Bioinformatics (Computational Biology Tree)
Ivan Levkivskyi post-doc 2016-2018 University of Lausanne
Frédéric Michaud post-doc 2018-2019 University of Lausanne and Swiss Institute of Bioinformatics
Florian Clemente post-doc 2018-2020 University of Lausanne and Swiss Institute of Bioinformatics
Carlos Eduardo Guerra-Amorim post-doc 2020-2021 University of Lausanne and Swiss Institute of Bioinformatics

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Publications

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Garrido Marques A, Rubinacci S, Malaspinas AS, et al. (2024) Assessing the impact of post-mortem damage and contamination on imputation performance in ancient DNA. Scientific Reports. 14: 6227
Sousa da Mota B, Rubinacci S, Cruz Dávalos DI, et al. (2023) Imputation of ancient human genomes. Nature Communications. 14: 3660
Neuenschwander S, Cruz Dávalos DI, Anchieri L, et al. (2023) Mapache: a flexible pipeline to map ancient DNA. Bioinformatics (Oxford, England)
Arizmendi Cárdenas YO, Neuenschwander S, Malaspinas AS. (2022) Benchmarking metagenomics classifiers on ancient viral DNA: a simulation study. Peerj. 10: e12784
Clemente F, Unterländer M, Dolgova O, et al. (2021) The genomic history of the Aegean palatial civilizations. Cell
Dehasque M, Ávila-Arcos MC, Díez-Del-Molino D, et al. (2020) Inference of natural selection from ancient DNA. Evolution Letters. 4: 94-108
Raghavan M, Schroeder H, Malaspinas AS. (2019) An Ancient Genome from the Indus Valley Civilization. Cell. 179: 586-588
Moreno-Mayar JV, Korneliussen TS, Dalal J, et al. (2019) A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data. Bioinformatics (Oxford, England)
Wright JL, Wasef S, Heupink TH, et al. (2018) Ancient nuclear genomes enable repatriation of Indigenous human remains. Science Advances. 4: eaau5064
Moreno-Mayar JV, Vinner L, de Barros Damgaard P, et al. (2018) Early human dispersals within the Americas. Science (New York, N.Y.)
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