Ken D. Yokoyama, Ph.D.

Affiliations: 
Biology Duke University, Durham, NC 
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"Ken Yokoyama"
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Parents

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Gregory A. Wray grad student 2010 Duke
 (Studies into location-specific cis-regulatory motifs.)
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Publications

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Yokoyama KD, Zhang Y, Ma J. (2014) Tracing the evolution of lineage-specific transcription factor binding sites in a birth-death framework. Plos Computational Biology. 10: e1003771
Castoe TA, Braun EL, Bronikowski AM, et al. (2012) Report from the first snake genomics and integrative biology meeting. Standards in Genomic Sciences. 7: 150-2
Yokoyama KD, Pollock DD. (2012) SP transcription factor paralogs and DNA-binding sites coevolve and adaptively converge in mammals and birds. Genome Biology and Evolution. 4: 1102-17
Castoe TA, de Koning JA, Hall KT, et al. (2011) Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes. Genome Biology. 12: 406
Yokoyama KD, Thorne JL, Wray GA. (2011) Coordinated genome-wide modifications within proximal promoter cis-regulatory elements during vertebrate evolution. Genome Biology and Evolution. 3: 66-74
Yokoyama KD, Ohler U, Wray GA. (2009) Measuring spatial preferences at fine-scale resolution identifies known and novel cis-regulatory element candidates and functional motif-pair relationships. Nucleic Acids Research. 37: e92
Haygood R, Fedrigo O, Hanson B, et al. (2007) Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution. Nature Genetics. 39: 1140-4
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