David Swofford, Ph.D.
Affiliations: | Biology | Duke University, Durham, NC |
Area:
PhylogeneticsGoogle:
"David Swofford"Parents
Sign in to add mentor| Branley A. Branson | grad student | 1982 | Eastern Kentucky University | |
| (M.S. thesis) | ||||
| Robert Keith Selander | grad student | 1986 | UIUC | |
| (Studies in numerical cladistics : phylogenetic inference under the principle of maximum parsimony) | ||||
Children
Sign in to add trainee| Dan L. Warren | research assistant | 2001-2003 | Florida State |
| Frank E. Anderson | post-doc | Smithsonian Institution | |
| Peter G. Foster | post-doc | Smithsonian Institution | |
| John P. Huelsenbeck | post-doc | Smithsonian Institution | |
| Paul O. Lewis | post-doc | Smithsonian Institution | |
| Johan Nylander | post-doc | Florida State | |
| John M. Sullivan | post-doc | Smithsonian Institution | |
| Mark T. Holder | post-doc | 2003-2007 | Florida State |
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Publications
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| Peng J, Swofford DL, Kubatko L. (2022) Estimation of Speciation Times Under the Multispecies Coalescent. Bioinformatics (Oxford, England) |
| Ayres DL, Cummings MP, Baele G, et al. (2019) BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics. Systematic Biology |
| Somarelli JA, Ware KE, Kostadinov R, et al. (2016) PhyloOncology: Understanding cancer through phylogenetic analysis. Biochimica Et Biophysica Acta |
| Lewis PO, Holder MT, Swofford DL. (2015) Phycas: software for Bayesian phylogenetic analysis. Systematic Biology. 64: 525-31 |
| Ayres DL, Darling A, Zwickl DJ, et al. (2012) BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics. Systematic Biology. 61: 170-3 |
| Kurt Lienau E, DeSalle R, Allard M, et al. (2011) The mega-matrix tree of life: Using genome-scale horizontal gene transfer and sequence evolution data as information about the vertical history of life Cladistics. 27: 417-427 |
| Holder MT, Lewis PO, Swofford DL. (2010) The akaike information criterion will not choose the no common mechanism model. Systematic Biology. 59: 477-85 |
| Nylander JA, Wilgenbusch JC, Warren DL, et al. (2008) AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics (Oxford, England). 24: 581-3 |
| Holder MT, Lewis PO, Swofford DL, et al. (2005) Hastings ratio of the LOCAL proposal used in Bayesian phylogenetics. Systematic Biology. 54: 961-5 |
| Anderson FE, Swofford DL. (2004) Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA. Molecular Phylogenetics and Evolution. 33: 440-51 |