Paul Pavlidis
Affiliations: | University of British Columbia, Vancouver, Vancouver, BC, Canada |
Area:
BioinformaticsWebsite:
http://bioinformatics.ubc.ca/pavlidis/Google:
"Paul Pavlidis"Mean distance: 13.59 (cluster 11) | S | N | B | C | P |
Cross-listing: Computational Biology Tree
Parents
Sign in to add mentor| Mark Tanouye | grad student | 1991-1994 | |
| Daniel V. Madison | post-doc | Stanford |
Children
Sign in to add trainee| Shamsuddin A. Bhuiyan | grad student | ||
| Nathaniel Lim | grad student | 2013- | UBC |
| Eric Chu | grad student | 2016- | UBC |
| Nivretta Thatra | grad student | 2016- | UBC |
| Alexander Morin | grad student | 2017- | UBC |
| Leon French | grad student | 2005-2012 | |
| Meeta Mistry | grad student | 2006-2012 | UBC |
| Nikolaus Fortelny | grad student | 2012-2016 | University of Salzburg |
| Daniel Lai | grad student | 2014-2016 | UBC |
| B. Ogan Mancarci | grad student | 2014-2018 | UBC |
| Marjan Farahbod | grad student | 2012-2019 | UBC |
| Lilach Toker | post-doc | UBC | |
| Shreejoy J. Tripathy | post-doc | 2014- | Carnegie Mellon |
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Publications
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| Morin A, Chu C, Pavlidis P. (2024) Identifying Reproducible Transcription Regulator Coexpression Patterns with Single Cell Transcriptomics. Biorxiv : the Preprint Server For Biology |
| Morin A, Chu EC, Sharma A, et al. (2023) Characterizing the targets of transcription regulators by aggregating ChIP-seq and perturbation expression data sets. Genome Research. 33: 763-778 |
| Novakovsky G, Sasaki S, Fornes O, et al. (2023) In silico discovery of small molecules for efficient stem cell differentiation into definitive endoderm. Stem Cell Reports |
| Chu EC, Morin A, Chang THC, et al. (2021) Experiment level curation of transcriptional regulatory interactions in neurodevelopment. Plos Computational Biology. 17: e1009484 |
| Lim N, Pavlidis P. (2021) Evaluation of connectivity map shows limited reproducibility in drug repositioning. Scientific Reports. 11: 17624 |
| Sicherman J, Newton DF, Pavlidis P, et al. (2021) Estimating and Correcting for Off-Target Cellular Contamination in Brain Cell Type Specific RNA-Seq Data. Frontiers in Molecular Neuroscience. 14: 637143 |
| Lim N, Tesar S, Belmadani M, et al. (2021) Curation of over 10 000 transcriptomic studies to enable data reuse. Database : the Journal of Biological Databases and Curation |
| Farahbod M, Pavlidis P. (2020) Untangling the effects of cellular composition on coexpression analysis. Genome Research |
| Post KL, Belmadani M, Ganguly P, et al. (2020) Multi-model functionalization of disease-associated PTEN missense mutations identifies multiple molecular mechanisms underlying protein dysfunction. Nature Communications. 11: 2073 |
| Nagy C, Maitra M, Tanti A, et al. (2020) Single-nucleus transcriptomics of the prefrontal cortex in major depressive disorder implicates oligodendrocyte precursor cells and excitatory neurons. Nature Neuroscience |