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Paul Pavlidis - Publications

Affiliations: 
University of British Columbia, Vancouver, Vancouver, BC, Canada 
Area:
Bioinformatics
Website:
http://bioinformatics.ubc.ca/pavlidis/

254 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Lim N, Pavlidis P. Evaluation of connectivity map shows limited reproducibility in drug repositioning. Scientific Reports. 11: 17624. PMID 34475469 DOI: 10.1038/s41598-021-97005-z  1
2021 Sicherman J, Newton DF, Pavlidis P, Sibille E, Tripathy SJ. Estimating and Correcting for Off-Target Cellular Contamination in Brain Cell Type Specific RNA-Seq Data. Frontiers in Molecular Neuroscience. 14: 637143. PMID 33746712 DOI: 10.3389/fnmol.2021.637143  1
2021 Lim N, Tesar S, Belmadani M, Poirier-Morency G, Mancarci BO, Sicherman J, Jacobson M, Leong J, Tan P, Pavlidis P. Curation of over 10 000 transcriptomic studies to enable data reuse. Database : the Journal of Biological Databases and Curation. PMID 33599246 DOI: 10.1093/database/baab006  1
2020 Meili F, Wei WJ, Sin WC, Meyers WM, Dascalu I, Callaghan DB, Rogic S, Pavlidis P, Haas K. Multi-parametric analysis of 57 SYNGAP1 variants reveal impacts on GTPase signaling, localization, and protein stability. American Journal of Human Genetics. PMID 33308442 DOI: 10.1016/j.ajhg.2020.11.011  1
2020 Berndt AJ, Othonos KM, Lian T, Flibotte S, Miao M, Buiyan S, Cho RY, Fong JS, Hur SA, Pavlidis P, Allan DW. A low affinity -regulatory BMP response element restricts target gene activation to subsets of neurons. Elife. 9. PMID 33124981 DOI: 10.7554/eLife.59650  0.01
2020 Farahbod M, Pavlidis P. Untangling the effects of cellular composition on coexpression analysis. Genome Research. PMID 32580998 DOI: 10.1101/Gr.256735.119  1
2020 Post KL, Belmadani M, Ganguly P, Meili F, Dingwall R, McDiarmid TA, Meyers WM, Herrington C, Young BP, Callaghan DB, Rogic S, Edwards M, Niciforovic A, Cau A, Rankin CH, ... ... Pavlidis P, et al. Multi-model functionalization of disease-associated PTEN missense mutations identifies multiple molecular mechanisms underlying protein dysfunction. Nature Communications. 11: 2073. PMID 32350270 DOI: 10.1038/S41467-020-15943-0  1
2020 Nagy C, Maitra M, Tanti A, Suderman M, Théroux JF, Davoli MA, Perlman K, Yerko V, Wang YC, Tripathy SJ, Pavlidis P, Mechawar N, Ragoussis J, Turecki G. Single-nucleus transcriptomics of the prefrontal cortex in major depressive disorder implicates oligodendrocyte precursor cells and excitatory neurons. Nature Neuroscience. PMID 32341540 DOI: 10.1038/S41593-020-0621-Y  1
2020 Boycott KM, Campeau PM, Howley HE, Pavlidis P, Rogic S, Oriel C, Berman JN, Hamilton RM, Hicks GG, Lipshitz HD, Masson JY, Shoubridge EA, Junker A, Leroux MR, McMaster CR, et al. The Canadian Rare Diseases Models and Mechanisms (RDMM) Network: Connecting Understudied Genes to Model Organisms. American Journal of Human Genetics. 106: 143-152. PMID 32032513 DOI: 10.1016/J.Ajhg.2020.01.009  1
2020 Baehring SK, O’Leary TP, Holenka DM, Li H, Kim K, Mehran AE, Pavlidis P, Kim E, Bamji SX, Johnson JD. SUN-240 Female Mice Lacking Brain Insulin Production Exhibit Learning Deficits, Anxiety, and Reduced Hippocampal Cyclin D1 Expression Journal of the Endocrine Society. 4. DOI: 10.1210/Jendso/Bvaa046.1066  0.01
2020 Nagy C, Maitra M, Tanti A, Suderman M, Théroux J, Tripathy S, Pavlidis P, Mechawar N, Turecki G. Single-Cell Genomic Strategies to Understand Psychopathological Processes in Depression and Suicide Biological Psychiatry. 87: S43. DOI: 10.1016/J.Biopsych.2020.02.134  0.01
2019 Zhuang B, Mancarci BO, Toker L, Pavlidis P. Mega-Analysis of Gene Expression in Mouse Models of Alzheimer's Disease. Eneuro. 6. PMID 31767574 DOI: 10.1523/ENEURO.0226-19.2019  1
2019 McDiarmid TA, Belmadani M, Liang J, Meili F, Mathews EA, Mullen GP, Hendi A, Wong WR, Rand JB, Mizumoto K, Haas K, Pavlidis P, Rankin CH. Systematic phenomics analysis of autism-associated genes reveals parallel networks underlying reversible impairments in habituation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31754030 DOI: 10.1073/pnas.1912049116  1
2019 Belmadani M, Jacobson M, Holmes N, Phan M, Nguyen T, Pavlidis P, Rogic S. VariCarta: A Comprehensive Database of Harmonized Genomic Variants Found in Autism Spectrum Disorder Sequencing Studies. Autism Research : Official Journal of the International Society For Autism Research. PMID 31705629 DOI: 10.1002/aur.2236  1
2019 Bomkamp C, Tripathy SJ, Bengtsson Gonzales C, Hjerling-Leffler J, Craig AM, Pavlidis P. Transcriptomic correlates of electrophysiological and morphological diversity within and across excitatory and inhibitory neuron classes. Plos Computational Biology. 15: e1007113. PMID 31211786 DOI: 10.1371/Journal.Pcbi.1007113  1
2019 Callaghan DB, Rogic S, Tan PPC, Calli K, Qiao Y, Baldwin R, Jacobson M, Belmadani M, Holmes N, Yu C, Li Y, Li Y, Kurtzke FE, Kuzeljevic B, Yu A, ... ... Pavlidis P, et al. Whole genome sequencing and variant discovery in the ASPIRE autism spectrum disorder cohort. Clinical Genetics. PMID 31038196 DOI: 10.1111/Cge.13556  1
2019 Crow M, Lim N, Ballouz S, Pavlidis P, Gillis J. Predictability of human differential gene expression. Proceedings of the National Academy of Sciences of the United States of America. PMID 30846554 DOI: 10.1073/Pnas.1802973116  1
2018 Tripathy SJ, Toker L, Bomkamp C, Mancarci BO, Belmadani M, Pavlidis P. Assessing Transcriptome Quality in Patch-Seq Datasets. Frontiers in Molecular Neuroscience. 11: 363. PMID 30349457 DOI: 10.3389/Fnmol.2018.00363  1
2018 Toker L, Mancarci BO, Tripathy S, Pavlidis P. Transcriptomic Evidence for Alterations in Astrocytes and Parvalbumin Interneurons in Subjects With Bipolar Disorder and Schizophrenia. Biological Psychiatry. PMID 30177255 DOI: 10.1016/J.Biopsych.2018.07.010  1
2018 Bhuiyan SA, Ly S, Phan M, Huntington B, Hogan E, Liu CC, Liu J, Pavlidis P. Systematic evaluation of isoform function in literature reports of alternative splicing. Bmc Genomics. 19: 637. PMID 30153812 DOI: 10.1186/S12864-018-5013-2  1
2018 Jacobson M, Sedeño-Cortés AE, Pavlidis P. Monitoring changes in the Gene Ontology and their impact on genomic data analysis. Gigascience. PMID 30107399 DOI: 10.1093/gigascience/giy103  1
2018 Farahbod M, Pavlidis P. Differential coexpression in human tissues and the confounding effect of mean expression levels. Bioinformatics (Oxford, England). PMID 29982380 DOI: 10.1093/Bioinformatics/Bty538  1
2018 Dufour A, Bellac CL, Eckhard U, Solis N, Klein T, Kappelhoff R, Fortelny N, Jobin P, Rozmus J, Mark J, Pavlidis P, Dive V, Barbour SJ, Overall CM. C-terminal truncation of IFN-γ inhibits proinflammatory macrophage responses and is deficient in autoimmune disease. Nature Communications. 9: 2416. PMID 29925830 DOI: 10.1038/S41467-018-04717-4  1
2018 Lussier AA, Morin AM, MacIsaac JL, Salmon J, Weinberg J, Reynolds JN, Pavlidis P, Chudley AE, Kobor MS. DNA methylation as a predictor of fetal alcohol spectrum disorder. Clinical Epigenetics. 10: 5. PMID 29344313 DOI: 10.1186/S13148-018-0439-6  1
2017 Tebaykin D, Tripathy SJ, Binnion N, Li B, Gerkin RC, Pavlidis P. Modeling sources of inter-laboratory variability in electrophysiological properties of mammalian neurons. Journal of Neurophysiology. PMID 29357465 DOI: 10.1152/Jn.00604.2017  1
2017 Mancarci BO, Toker L, Tripathy SJ, Li B, Rocco B, Sibille E, Pavlidis P. Cross-Laboratory Analysis of Brain Cell Type Transcriptomes with Applications to Interpretation of Bulk Tissue Data. Eneuro. 4. PMID 29204516 DOI: 10.1523/ENEURO.0212-17.2017  1
2017 Tripathy SJ, Toker L, Li B, Crichlow CL, Tebaykin D, Mancarci BO, Pavlidis P. Transcriptomic correlates of neuron electrophysiological diversity. Plos Computational Biology. 13: e1005814. PMID 29069078 DOI: 10.1371/Journal.Pcbi.1005814  1
2017 Bainer RO, Trendowski MR, Cheng C, Pei D, Yang W, Paugh SW, Goss KH, Skol AD, Pavlidis P, Pui CH, Gilliam TC, Evans WE, Onel K. A p53-regulated apoptotic gene signature predicts treatment response and outcome in pediatric acute lymphoblastic leukemia. Cancer Management and Research. 9: 397-410. PMID 28979163 DOI: 10.2147/Cmar.S139864  1
2017 Fortelny N, Overall CM, Pavlidis P, Freue GVC. Can we predict protein from mRNA levels? Nature. 547: E19-E20. PMID 28748932 DOI: 10.1038/Nature22293  1
2017 Fortelny N, Butler GS, Overall CM, Pavlidis P. Protease-inhibitor interaction predictions: Lessons on the complexity of protein-protein interactions. Molecular & Cellular Proteomics : McP. PMID 28385878 DOI: 10.1074/Mcp.M116.065706  1
2017 Ballouz S, Pavlidis P, Gillis J. Using predictive specificity to determine when gene set analysis is biologically meaningful. Nucleic Acids Research. 45: e20. PMID 28204549 DOI: 10.1093/Nar/Gkw957  1
2017 Toker L, Mancarci O, Pavlidis P. 11. Changes in Cellular Abundance Underlying Transcriptional Alterations in Psychiatric Patients Biological Psychiatry. 81: S5. DOI: 10.1016/j.biopsych.2017.02.022  0.01
2016 Ballouz S, Weber M, Pavlidis P, Gillis J. EGAD: ultra-fast functional analysis of gene networks. Bioinformatics (Oxford, England). PMID 27993773 DOI: 10.1093/Bioinformatics/Btw695  1
2016 Ballouz S, Pavlidis P, Gillis J. Using predictive specificity to determine when gene set analysis is biologically meaningful. Nucleic Acids Research. PMID 27924030 DOI: 10.1093/nar/gkw957  1
2016 Toker L, Feng M, Pavlidis P. Whose sample is it anyway? Widespread misannotation of samples in transcriptomics studies. F1000research. 5: 2103. PMID 27746907 DOI: 10.12688/f1000research.9471.2  1
2016 Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, ... ... Pavlidis P, et al. An expanded evaluation of protein function prediction methods shows an improvement in accuracy. Genome Biology. 17: 184. PMID 27604469 DOI: 10.1186/S13059-016-1037-6  0.01
2016 Portales-Casamar E, Lussier AA, Jones MJ, MacIsaac JL, Edgar RD, Mah SM, Barhdadi A, Provost S, Lemieux-Perreault LP, Cynader MS, Chudley AE, Dubé MP, Reynolds JN, Pavlidis P, Kobor MS. DNA methylation signature of human fetal alcohol spectrum disorder. Epigenetics & Chromatin. 9: 25. PMID 27358653 DOI: 10.1186/S13072-016-0074-4  1
2016 Papadantonakis S, Poirazi P, Pavlidis P. CoMuS: Simulating coalescent histories and polymorphic data from multiple species. Molecular Ecology Resources. PMID 27238297 DOI: 10.1111/1755-0998.12544  1
2016 Tan PP, Rogic S, Zoubarev A, McDonald C, Lui F, Charathsandran G, Jacobson M, Belmadani M, Leong J, Van Rossum T, Portales-Casamar E, Qiao Y, Calli K, Liu X, Hudson M, ... ... Pavlidis P, et al. Interactive Exploration, Analysis and Visualization of Complex Phenome-Genome Datasets with ASPIREdb. Human Mutation. PMID 27158917 DOI: 10.1002/humu.23011  1
2016 Rogic S, Wong A, Pavlidis P. Meta-Analysis of Gene Expression Patterns in Animal Models of Prenatal Alcohol Exposure Suggests Role for Protein Synthesis Inhibition and Chromatin Remodeling. Alcoholism, Clinical and Experimental Research. PMID 26996386 DOI: 10.1111/acer.13007  1
2016 Burgstaller-Muehlbacher S, Waagmeester A, Mitraka E, Turner J, Putman T, Leong J, Naik C, Pavlidis P, Schriml L, Good BM, Su AI. Wikidata as a semantic framework for the Gene Wiki initiative. Database : the Journal of Biological Databases and Curation. 2016. PMID 26989148 DOI: 10.1093/Database/Baw015  1
2016 Price EM, Peñaherrera MS, Portales-Casamar E, Pavlidis P, Van Allen MI, McFadden DE, Robinson WP. Profiling placental and fetal DNA methylation in human neural tube defects. Epigenetics & Chromatin. 9: 6. PMID 26889207 DOI: 10.1186/S13072-016-0054-8  1
2016 Fascì-Spurio F, Pavlidis P, Bjarnason I. A new form of chronic inflammatory bowel disease associated with chronic liver disease. Scandinavian Journal of Gastroenterology. 1-2. PMID 26728083 DOI: 10.3109/00365521.2015.1128141  1
2015 Mourmoura E, Vasilaki A, Giannoukas A, Michalodimitrakis E, Pavlidis P, Tsezou A. Evidence of deregulated cholesterol efflux in abdominal aortic aneurysm. Acta Histochemica. PMID 26725543 DOI: 10.1016/j.acthis.2015.11.012  1
2015 Horvath GA, Demos M, Shyr C, Matthews A, Zhang L, Race S, Stockler-Ipsiroglu S, Van Allen MI, Mancarci O, Toker L, Pavlidis P, Ross CJ, Wasserman WW, Trump N, Heales S, et al. Secondary neurotransmitter deficiencies in epilepsy caused by voltage-gated sodium channelopathies: A potential treatment target? Molecular Genetics and Metabolism. PMID 26647175 DOI: 10.1016/j.ymgme.2015.11.008  1
2015 Bjarnason I, Hayee B, Pavlidis P, Kvasnovsky C, Scalori A, Sisson G, Charlesworth A, Shaikh H, Bjornsson E, Heneghan MA. Contrasting Pattern of Chronic Inflammatory Bowel Disease in Primary and Autoimmune Sclerosing Cholangitis. Ebiomedicine. 2: 1523-7. PMID 26629548 DOI: 10.1016/j.ebiom.2015.08.041  1
2015 Portales-Casamar E, Mah SM, MacIsaac JL, Barhdadi A, Provost S, Dubé MP, Reynolds JN, Pavlidis P, Kobor MS. DNA methylation changes in fetal alcohol spectrum disorder. International Journal of Developmental Neuroscience : the Official Journal of the International Society For Developmental Neuroscience. 47: 126. PMID 26531658 DOI: 10.1016/j.ijdevneu.2015.04.336  1
2015 Pavlidis P, Bjarnason I. Aspirin Induced Adverse Effects on the Small and Large Intestine. Current Pharmaceutical Design. 21: 5089-93. PMID 26369683  1
2015 Pavlidis P, Komorowski L, Teegen B, Liaskos C, Koutsoumpas AL, Smyk DS, Perricone C, Mytilinaiou MG, Stocker W, Forbes A, Bogdanos DP. Diagnostic and clinical significance of Crohn's disease-specific pancreatic anti-GP2 and anti-CUZD1 antibodies. Clinical Chemistry and Laboratory Medicine : Cclm / Fescc. PMID 26351932 DOI: 10.1515/cclm-2015-0376  1
2015 Pavlidis P, Karakasi V. The simultaneous death of seven people due to the detonation of an antipersonnel landmine at the land borders of the European Union during peacetime. American Journal of Disaster Medicine. 10: 167-72. PMID 26312497 DOI: 10.5055/ajdm.2015.0199  0.01
2015 Cruceanu C, Tan PP, Rogic S, Lopez JP, Torres-Platas SG, Gigek CO, Alda M, Rouleau GA, Pavlidis P, Turecki G. Transcriptome Sequencing of the Anterior Cingulate in Bipolar Disorder: Dysregulation of G Protein-Coupled Receptors. The American Journal of Psychiatry. appiajp201514101279. PMID 26238605 DOI: 10.1176/Appi.Ajp.2015.14101279  1
2015 Pavlidis P, Powell N, Vincent RP, Ehrlich D, Bjarnason I, Hayee B. Systematic review: bile acids and intestinal inflammation-luminal aggressors or regulators of mucosal defence? Alimentary Pharmacology & Therapeutics. PMID 26223936 DOI: 10.1111/apt.13333  1
2015 Pavlidis P, Potts J, Barnabas A, Heaton N, Bjarnason I, Heneghan M, Hayee B. Anti-tumour necrosis alpha treatment in primary sclerosing cholangitis associated inflammatory bowel disease post liver transplantation. Liver Transplantation : Official Publication of the American Association For the Study of Liver Diseases and the International Liver Transplantation Society. PMID 26175058 DOI: 10.1002/lt.24212  1
2015 Toker L, Pavlidis P. Metaanalysis of flawed expression profiling data leading to erroneous Parkinson's biomarker identification. Proceedings of the National Academy of Sciences of the United States of America. 112: E3637. PMID 26106167 DOI: 10.1073/pnas.1507563112  1
2015 French L, Liu P, Marais O, Koreman T, Tseng L, Lai A, Pavlidis P. Text mining for neuroanatomy using WhiteText with an updated corpus and a new web application. Frontiers in Neuroinformatics. 9: 13. PMID 26052282 DOI: 10.3389/Fninf.2015.00013  1
2015 Fortelny N, Pavlidis P, Overall CM. The path of no return-Truncated protein N-termini and current ignorance of their genesis. Proteomics. 15: 2547-52. PMID 26010509 DOI: 10.1002/Pmic.201500043  1
2015 Ch'ng C, Kwok W, Rogic S, Pavlidis P. Meta-Analysis of Gene Expression in Autism Spectrum Disorder. Autism Research : Official Journal of the International Society For Autism Research. PMID 25720351 DOI: 10.1002/aur.1475  1
2015 Pavlidis P, Gouveris H, Gorgulla H, Hast HJ, Maurer J. Electrogustometry and contact endoscopy findings in patients with head and neck malignancies treated with chemotherapy, radiotherapy, or radiochemotherapy. Chemical Senses. 40: 165-71. PMID 25715386 DOI: 10.1093/chemse/bju060  1
2015 Lussier AA, Stepien KA, Neumann SM, Pavlidis P, Kobor MS, Weinberg J. Prenatal alcohol exposure alters steady-state and activated gene expression in the adult rat brain. Alcoholism, Clinical and Experimental Research. 39: 251-61. PMID 25684047 DOI: 10.1111/Acer.12622  1
2015 Lin YL, Pavlidis P, Karakoc E, Ajay J, Gokcumen O. The evolution and functional impact of human deletion variants shared with archaic hominin genomes. Molecular Biology and Evolution. 32: 1008-19. PMID 25556237 DOI: 10.1093/Molbev/Msu405  1
2015 Pavlidis P, Heneghan M, Hayee B. Cholestyramine treats primary sclerosing cholangitis-associated inflammatory bowel disease. Journal of Crohn's & Colitis. 9: 210. PMID 25518061 DOI: 10.1093/ecco-jcc/jju020  1
2015 Pavlidis P, Shums Z, Koutsoumpas AL, Milo J, Papp M, Umemura T, Lakatos PL, Smyk DS, Bogdanos DP, Forbes A, Norman GL. Diagnostic and clinical significance of Crohn's disease-specific anti-MZGP2 pancreatic antibodies by a novel ELISA. Clinica Chimica Acta; International Journal of Clinical Chemistry. 441: 176-81. PMID 25512163 DOI: 10.1016/j.cca.2014.12.010  1
2015 Salvarinova R, Ye CX, Rossi A, Biancheri R, Roland EH, Pavlidis P, Ross CJ, Tarailo-Graovac M, Wasserman WW, van Karnebeek CD. Expansion of the QARS deficiency phenotype with report of a family with isolated supratentorial brain abnormalities. Neurogenetics. 16: 145-9. PMID 25432320 DOI: 10.1007/s10048-014-0432-y  1
2015 Fortelny N, Yang S, Pavlidis P, Lange PF, Overall CM. Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events. Nucleic Acids Research. 43: D290-7. PMID 25332401 DOI: 10.1093/Nar/Gku1012  1
2015 Mancarcı O, Toker L, Tripathy S, Pavlidis P. A comprehensive database of cell-type specific marker genes for the mammalian brain F1000research. 4. DOI: 10.7490/F1000Research.1110181.1  1
2015 Tebaykin D, Tripathy S, Li B, Abdollahzadeh D, Anderson K, Pavlidis P. Application of large-scale text-mining and curation for extracting neuronal electrophysiology data F1000research. 4. DOI: 10.7490/F1000Research.1110179.1  1
2015 Tripathy SJ, Tebaykin D, Li B, Marcarci O, Toker L, Pavlidis P. Large-scale analysis of brain-wide electrophysiological diversity reveals novel characterization of mammalian neuron types Bmc Neuroscience. 16. DOI: 10.1186/1471-2202-16-S1-O4  0.01
2015 Eaaswarkhanth M, Pavlidis P, Gokcumen O. Geographic distribution and adaptive significance of genomic structural variants: An anthropological genetics perspective Human Biology. 86: 260-275.  1
2015 Pavlidis P. Social consciousness, education and transformative activity Journal For Critical Education Policy Studies. 13: 1-37.  1
2014 Eaaswarkhanth M, Pavlidis P, Gokcumen O. Geographic distribution and adaptive significance of genomic structural variants: an anthropological genetics perspective. Human Biology. 86: 260-75. PMID 25959693 DOI: 10.13110/Humanbiology.86.4.0260  1
2014 Pavlidis P, Gouveris H, Kekes G, Maurer J. Electrogustometry thresholds, tongue tip vascularization, and density and morphology of the fungiform papillae in diabetes. B-Ent. 10: 271-8. PMID 25654950  1
2014 Edgar R, Tan PP, Portales-Casamar E, Pavlidis P. Meta-analysis of human methylomes reveals stably methylated sequences surrounding CpG islands associated with high gene expression. Epigenetics & Chromatin. 7: 28. PMID 25493099 DOI: 10.1186/1756-8935-7-28  1
2014 Sedeño-Cortés AE, Pavlidis P. Pitfalls in the application of gene-set analysis to genetics studies. Trends in Genetics : Tig. 30: 513-4. PMID 25459301 DOI: 10.1016/j.tig.2014.10.001  1
2014 Pavlidis P, Ansari A, Duley J, Oancea I, Florin T. Splitting a therapeutic dose of thioguanine may avoid liver toxicity and be an efficacious treatment for severe inflammatory bowel disease: a 2-center observational cohort study. Inflammatory Bowel Diseases. 20: 2239-46. PMID 25230165 DOI: 10.1097/MIB.0000000000000206  1
2014 Qiao Y, Mercier E, Dastan J, Hurlburt J, McGillivray B, Chudley AE, Farrell S, Bernier FP, Lewis MS, Pavlidis P, Rajcan-Separovic E. Copy number variants (CNVs) analysis in a deeply phenotyped cohort of individuals with intellectual disability (ID). Bmc Medical Genetics. 15: 82. PMID 25030379 DOI: 10.1186/1471-2350-15-82  1
2014 Lopez JP, Lim R, Cruceanu C, Crapper L, Fasano C, Labonte B, Maussion G, Yang JP, Yerko V, Vigneault E, El Mestikawy S, Mechawar N, Pavlidis P, Turecki G. miR-1202 is a primate-specific and brain-enriched microRNA involved in major depression and antidepressant treatment. Nature Medicine. 20: 764-8. PMID 24908571 DOI: 10.1038/Nm.3582  1
2014 Fortelny N, Cox JH, Kappelhoff R, Starr AE, Lange PF, Pavlidis P, Overall CM. Network analyses reveal pervasive functional regulation between proteases in the human protease web. Plos Biology. 12: e1001869. PMID 24865846 DOI: 10.1371/Journal.Pbio.1001869  1
2014 McCarthy SE, Gillis J, Kramer M, Lihm J, Yoon S, Berstein Y, Mistry M, Pavlidis P, Solomon R, Ghiban E, Antoniou E, Kelleher E, O'Brien C, Donohoe G, Gill M, et al. De novo mutations in schizophrenia implicate chromatin remodeling and support a genetic overlap with autism and intellectual disability. Molecular Psychiatry. 19: 652-8. PMID 24776741 DOI: 10.1038/Mp.2014.29  1
2014 Kebschull M, Demmer RT, Grün B, Guarnieri P, Pavlidis P, Papapanou PN. Gingival tissue transcriptomes identify distinct periodontitis phenotypes. Journal of Dental Research. 93: 459-68. PMID 24646639 DOI: 10.1177/0022034514527288  1
2014 Pavlidis P, Gouveris C, Kekes G, Maurer J. Changes in electrogustometry thresholds, tongue tip vascularization, density and form of the fungiform papillae in smokers. European Archives of Oto-Rhino-Laryngology : Official Journal of the European Federation of Oto-Rhino-Laryngological Societies (Eufos) : Affiliated With the German Society For Oto-Rhino-Laryngology - Head and Neck Surgery. 271: 2325-31. PMID 24633309 DOI: 10.1007/s00405-014-3003-9  1
2014 Jeffries KM, Hinch SG, Sierocinski T, Pavlidis P, Miller KM. Transcriptomic responses to high water temperature in two species of Pacific salmon. Evolutionary Applications. 7: 286-300. PMID 24567748 DOI: 10.1111/eva.12119  1
2014 Gillis J, Ballouz S, Pavlidis P. Bias tradeoffs in the creation and analysis of protein-protein interaction networks. Journal of Proteomics. 100: 44-54. PMID 24480284 DOI: 10.1016/J.Jprot.2014.01.020  1
2014 Pybus M, Dall'Olio GM, Luisi P, Uzkudun M, Carreño-Torres A, Pavlidis P, Laayouni H, Bertranpetit J, Engelken J. 1000 Genomes Selection Browser 1.0: a genome browser dedicated to signatures of natural selection in modern humans. Nucleic Acids Research. 42: D903-9. PMID 24275494 DOI: 10.1093/nar/gkt1188  1
2014 Pavlidis P, Maurer J, Apostolidou E, Kekes G, Kouvelas D. Memantine's action against aminoglycoside-induced ototoxicity. European Archives of Oto-Rhino-Laryngology : Official Journal of the European Federation of Oto-Rhino-Laryngological Societies (Eufos) : Affiliated With the German Society For Oto-Rhino-Laryngology - Head and Neck Surgery. 271: 1491-6. PMID 23917735 DOI: 10.1007/s00405-013-2647-1  1
2014 Pissis SP, Goll C, Pavlidis P, Stamatakis A. Accelerating string matching on MIC architecture for motif extraction Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8385: 258-267. DOI: 10.1007/978-3-642-55195-6_24  1
2013 Pavlidis P, Gillis J. Progress and challenges in the computational prediction of gene function using networks: 2012-2013 update. F1000research. 2: 230. PMID 24715959 DOI: 10.12688/f1000research.2-230.v1  1
2013 Alachiotis N, Vogiatzi E, Pavlidis P, Stamatakis A. ChromatoGate: A Tool for Detecting Base Mis-Calls in Multiple Sequence Alignments by Semi-Automatic Chromatogram Inspection. Computational and Structural Biotechnology Journal. 6: e201303001. PMID 24688709 DOI: 10.5936/csbj.201303001  1
2013 Grammatikopoulou I, Kontomanolis EN, Chatzaki E, Chouridou E, Pavlidis P, Papadopoulos EM, Lambropoulou M. Immature malignant sacrococcygeal teratoma: case report and review of the literature. Clinical and Experimental Obstetrics & Gynecology. 40: 437-9. PMID 24283184  1
2013 Kebschull M, Guarnieri P, Demmer RT, Boulesteix AL, Pavlidis P, Papapanou PN. Molecular differences between chronic and aggressive periodontitis. Journal of Dental Research. 92: 1081-8. PMID 24122488 DOI: 10.1177/0022034513506011  1
2013 Antoniou GA, Georgiadis GS, Antoniou SA, Pavlidis P, Maras D, Sfyroeras GS, Georgakarakos EI, Lazarides MK. Endovascular repair for ruptured abdominal aortic aneurysm confers an early survival benefit over open repair. Journal of Vascular Surgery. 58: 1091-105. PMID 24075109 DOI: 10.1016/j.jvs.2013.07.109  1
2013 Mistry M, Gillis J, Pavlidis P. Meta-analysis of gene coexpression networks in the post-mortem prefrontal cortex of patients with schizophrenia and unaffected controls. Bmc Neuroscience. 14: 105. PMID 24070017 DOI: 10.1186/1471-2202-14-105  1
2013 Gokcumen O, Tischler V, Tica J, Zhu Q, Iskow RC, Lee E, Fritz MH, Langdon A, Stütz AM, Pavlidis P, Benes V, Mills RE, Park PJ, Lee C, Korbel JO. Primate genome architecture influences structural variation mechanisms and functional consequences. Proceedings of the National Academy of Sciences of the United States of America. 110: 15764-9. PMID 24014587 DOI: 10.1073/Pnas.1305904110  1
2013 Zhang J, Kapli P, Pavlidis P, Stamatakis A. A general species delimitation method with applications to phylogenetic placements. Bioinformatics (Oxford, England). 29: 2869-76. PMID 23990417 DOI: 10.1093/bioinformatics/btt499  1
2013 Qiao Y, Badduke C, Mercier E, Lewis SM, Pavlidis P, Rajcan-Separovic E. miRNA and miRNA target genes in copy number variations occurring in individuals with intellectual disability. Bmc Genomics. 14: 544. PMID 23937676 DOI: 10.1186/1471-2164-14-544  1
2013 Pavlidis P, Chedgy FJ, Tibble JA. Diagnostic accuracy and clinical application of faecal calprotectin in adult patients presenting with gastrointestinal symptoms in primary care. Scandinavian Journal of Gastroenterology. 48: 1048-54. PMID 23883068 DOI: 10.3109/00365521.2013.816771  1
2013 Pavlidis P, Forbes A, Bogdanos DP. Anti-GP2 antibodies in inflammatory bowel disease patients with ileal pouch. Journal of Crohn's & Colitis. 7: e602-3. PMID 23845232 DOI: 10.1016/j.crohns.2013.06.010  1
2013 Mahler M, Bogdanos DP, Pavlidis P, Fritzler MJ, Csernok E, Damoiseaux J, Bentow C, Shums Z, Forbes A, Norman GL. PR3-ANCA: a promising biomarker for ulcerative colitis with extensive disease. Clinica Chimica Acta; International Journal of Clinical Chemistry. 424: 267-73. PMID 23806819 DOI: 10.1016/J.Cca.2013.06.005  1
2013 Pavlidis P, Živkovic D, Stamatakis A, Alachiotis N. SweeD: likelihood-based detection of selective sweeps in thousands of genomes. Molecular Biology and Evolution. 30: 2224-34. PMID 23777627 DOI: 10.1093/molbev/mst112  1
2013 Pavlidis P, Crichton S, Lemmich Smith J, Morrison D, Atkinson S, Wyncoll D, Ostermann M. Improved outcome of severe acute pancreatitis in the intensive care unit. Critical Care Research and Practice. 2013: 897107. PMID 23662207 DOI: 10.1155/2013/897107  1
2013 Gillis J, Pavlidis P. Characterizing the state of the art in the computational assignment of gene function: lessons from the first critical assessment of functional annotation (CAFA). Bmc Bioinformatics. 14: S15. PMID 23630983 DOI: 10.1186/1471-2105-14-S3-S15  1
2013 Portales-Casamar E, Ch'ng C, Lui F, St-Georges N, Zoubarev A, Lai AY, Lee M, Kwok C, Kwok W, Tseng L, Pavlidis P. Neurocarta: aggregating and sharing disease-gene relations for the neurosciences. Bmc Genomics. 14: 129. PMID 23442263 DOI: 10.1186/1471-2164-14-129  1
2013 Tan PP, French L, Pavlidis P. Neuron-Enriched Gene Expression Patterns are Regionally Anti-Correlated with Oligodendrocyte-Enriched Patterns in the Adult Mouse and Human Brain. Frontiers in Neuroscience. 7: 5. PMID 23440889 DOI: 10.3389/Fnins.2013.00005  1
2013 Werzner A, Pavlidis P, Ometto L, Stephan W, Laurent S. Selective sweep in the Flotillin-2 region of European Drosophila melanogaster. Plos One. 8: e56629. PMID 23437190 DOI: 10.1371/Journal.Pone.0056629  1
2013 Gillis J, Pavlidis P. Assessing identity, redundancy and confounds in Gene Ontology annotations over time. Bioinformatics (Oxford, England). 29: 476-82. PMID 23297035 DOI: 10.1093/bioinformatics/bts727  1
2013 Melka MG, Gillis J, Bernard M, Abrahamowicz M, Chakravarty MM, Leonard GT, Perron M, Richer L, Veillette S, Banaschewski T, Barker GJ, Büchel C, Conrod P, Flor H, Heinz A, ... ... Pavlidis P, et al. FTO, obesity and the adolescent brain. Human Molecular Genetics. 22: 1050-8. PMID 23201753 DOI: 10.1093/Hmg/Dds504  1
2013 Pavlidis P, Gouveris H, Anogeianaki A, Koutsonikolas D, Anogianakis G, Kekes G. Age-related changes in electrogustometry thresholds, tongue tip vascularization, density, and form of the fungiform papillae in humans. Chemical Senses. 38: 35-43. PMID 23013608 DOI: 10.1093/chemse/bjs076  1
2013 Mistry M, Gillis J, Pavlidis P. Genome-wide expression profiling of schizophrenia using a large combined cohort. Molecular Psychiatry. 18: 215-25. PMID 22212594 DOI: 10.1038/Mp.2011.172  1
2013 Portales-Casamar E, Tseng L, Ch’ng C, Lui F, St-Georges N, Zoubarev A, Pavlidis P. Neurocarta: aggregating and sharing disease-gene relations for the interpretation of genomics studies F1000research. 4. DOI: 10.7490/F1000Research.1094297.1  1
2013 Rogic S, Zoubarev A, McDonald C, Lui F, Tan P, Ly M, Portales-Casamar E, Pavlidis P. ASPIREdb – an interactive web-based system for exploration of complex phenome-genome datasets F1000research. 4. DOI: 10.7490/F1000Research.1093978.1  1
2013 Pavlidis P. The ideal of education and the emancipation of labour Policy Futures in Education. 11: 299-312. DOI: 10.2304/pfie.2013.11.3.299  1
2013 Pissis SP, Stamatakis A, Pavlidis P. MoTeX: A word-based HPC tool for MoTif extraction 2013 Acm Conference On Bioinformatics, Computational Biology and Biomedical Informatics, Acm-Bcb 2013. 13-22. DOI: 10.1145/2506583.2506587  1
2013 Pantazatos SP, Talati A, Pavlidis P, Hirsch J. Corrigendum to Cortical functional connectivity decodes subconscious, task-irrelevant threat related emotion processing [Neuroimage 61/4 (2012) 1355-1363] (DOI:10.1016/j.neuroimage.2012.03.051) Neuroimage. DOI: 10.1016/J.Neuroimage.2013.01.019  1
2012 Pavlidis P, Gillis J. Progress and challenges in the computational prediction of gene function using networks. F1000research. 1: 14. PMID 23936626 DOI: 10.12688/f1000research.1-14.v1  1
2012 Kovatsi L, Redifis K, Mihailidou K, Pavlidis P, Samanidou V. A validated UHPLC-diode array detector method for the bioanalysis of atypical antipsychotics in whole blood, urine and cerebrospinal fluid following SPE. Bioanalysis. 4: 2929-38. PMID 23244283 DOI: 10.4155/bio.12.276  1
2012 Pavlidis P, Romanidou O, Roggenbuck D, Mytilinaiou MG, Al-Sulttan F, Liaskos C, Smyk DS, Koutsoumpas AL, Rigopoulou EI, Conrad K, Forbes A, Bogdanos DP. Ileal inflammation may trigger the development of GP2-specific pancreatic autoantibodies in patients with Crohn's disease. Clinical & Developmental Immunology. 2012: 640835. PMID 23118780 DOI: 10.1155/2012/640835  1
2012 Kotsikoris I, Papas TT, Papanas N, Tzor-Batzoglou I, Maras D, Bessias N, Pavlidis P, Andricopoulos V, Kotsiou S, Maltezos E. Femoral artery pseudoaneurysms in intravenous drug users: a 12-year series. International Angiology : a Journal of the International Union of Angiology. 31: 433-7. PMID 22990505  1
2012 Jeffries KM, Hinch SG, Sierocinski T, Clark TD, Eliason EJ, Donaldson MR, Li S, Pavlidis P, Miller KM. Consequences of high temperatures and premature mortality on the transcriptome and blood physiology of wild adult sockeye salmon (Oncorhynchus nerka). Ecology and Evolution. 2: 1747-64. PMID 22957178 DOI: 10.1002/ece3.274  1
2012 French L, Lane S, Xu L, Siu C, Kwok C, Chen Y, Krebs C, Pavlidis P. Application and evaluation of automated methods to extract neuroanatomical connectivity statements from free text. Bioinformatics (Oxford, England). 28: 2963-70. PMID 22954628 DOI: 10.1093/Bioinformatics/Bts542  1
2012 Bogdanos DP, Roggenbuck D, Reinhold D, Wex T, Pavlidis P, von Arnim U, Malfertheiner P, Forbes A, Conrad K, Laass MW. Pancreatic-specific autoantibodies to glycoprotein 2 mirror disease location and behaviour in younger patients with Crohn's disease. Bmc Gastroenterology. 12: 102. PMID 22866900 DOI: 10.1186/1471-230X-12-102  1
2012 Zoubarev A, Hamer KM, Keshav KD, McCarthy EL, Santos JR, Van Rossum T, McDonald C, Hall A, Wan X, Lim R, Gillis J, Pavlidis P. Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling data. Bioinformatics (Oxford, England). 28: 2272-3. PMID 22782548 DOI: 10.1093/Bioinformatics/Bts430  1
2012 Alachiotis N, Stamatakis A, Pavlidis P. OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets. Bioinformatics (Oxford, England). 28: 2274-5. PMID 22760304 DOI: 10.1093/bioinformatics/bts419  1
2012 Mulder KW, Wang X, Escriu C, Ito Y, Schwarz RF, Gillis J, Sirokmány G, Donati G, Uribe-Lewis S, Pavlidis P, Murrell A, Markowetz F, Watt FM. Diverse epigenetic strategies interact to control epidermal differentiation. Nature Cell Biology. 14: 753-63. PMID 22729083 DOI: 10.1038/Ncb2520  1
2012 Pavlidis P, Metzler D, Stephan W. Selective sweeps in multilocus models of quantitative traits. Genetics. 192: 225-39. PMID 22714406 DOI: 10.1534/genetics.112.142547  1
2012 Pavlidis P, Jensen JD, Stephan W, Stamatakis A. A critical assessment of storytelling: gene ontology categories and the importance of validating genomic scans. Molecular Biology and Evolution. 29: 3237-48. PMID 22617950 DOI: 10.1093/Molbev/Mss136  1
2012 Pantazatos SP, Talati A, Pavlidis P, Hirsch J. Cortical functional connectivity decodes subconscious, task-irrelevant threat-related emotion processing. Neuroimage. 61: 1355-63. PMID 22484206 DOI: 10.1016/J.Neuroimage.2012.03.051  1
2012 Gillis J, Pavlidis P. "Guilt by association" is the exception rather than the rule in gene networks. Plos Computational Biology. 8: e1002444. PMID 22479173 DOI: 10.1371/journal.pcbi.1002444  1
2012 Pantazatos SP, Talati A, Pavlidis P, Hirsch J. Decoding unattended fearful faces with whole-brain correlations: an approach to identify condition-dependent large-scale functional connectivity. Plos Computational Biology. 8: e1002441. PMID 22479172 DOI: 10.1371/Journal.Pcbi.1002441  1
2012 Paus T, Bernard M, Chakravarty MM, Davey Smith G, Gillis J, Lourdusamy A, Melka MG, Leonard G, Pavlidis P, Perron M, Pike GB, Richer L, Schumann G, Timpson N, Toro R, et al. KCTD8 gene and brain growth in adverse intrauterine environment: a genome-wide association study. Cerebral Cortex (New York, N.Y. : 1991). 22: 2634-42. PMID 22156575 DOI: 10.1093/Cercor/Bhr350  1
2012 French L, Pavlidis P. Using text mining to link journal articles to neuroanatomical databases. The Journal of Comparative Neurology. 520: 1772-83. PMID 22120205 DOI: 10.1002/Cne.23012  1
2012 Saminadin-Peter SS, Kemkemer C, Pavlidis P, Parsch J. Selective sweep of a cis-regulatory sequence in a non-African population of Drosophila melanogaster. Molecular Biology and Evolution. 29: 1167-74. PMID 22101416 DOI: 10.1093/Molbev/Msr284  1
2012 Bousios A, Kourmpetis YA, Pavlidis P, Minga E, Tsaftaris A, Darzentas N. The turbulent life of Sirevirus retrotransposons and the evolution of the maize genome: more than ten thousand elements tell the story. The Plant Journal : For Cell and Molecular Biology. 69: 475-88. PMID 21967390 DOI: 10.1111/j.1365-313X.2011.04806.x  1
2012 Kotsikoris I, Zygomalas A, Papas T, Maras D, Pavlidis P, Andrikopoulou M, Tsanis A, Alivizatos V, Bessias N. Insertion of central venous catheters for hemodialysis using angiographic techniques in patients with previous multiple catheterizations. European Journal of Radiology. 81: 2270-2. PMID 21724351 DOI: 10.1016/j.ejrad.2011.06.025  1
2012 Portales-Casamar E, Ch'ng C, Lui F, St-Georges N, Zoubarev A, Lai AY, Lee M, Kwok C, Kwok W, Tseng L, Pavlidis P. Neurocarta: online platform for integration and sharing of phenotypic and genomics information F1000research. 3. DOI: 10.7490/F1000Research.1092601.1  1
2012 Albuquerque P, Pavlidis P, Chatow U, Chen KY, Jamal Z. Evaluating promotional activities in an online two-sided market of user-generated content Marketing Science. 31: 406-432. DOI: 10.1287/Mksc.1110.0685  1
2012 Hammill E, Curtis JMR, Patterson DA, Farrell AP, Sierocinski T, Pavlidis P, Hinch SG, Miller K. Comparison of techniques for correlating survival and gene expression data from wild salmon Ecology of Freshwater Fish. 21: 189-199. DOI: 10.1111/j.1600-0633.2011.00536.x  1
2012 Alachiotis N, Pavlidis P, Stamatakis A. Exploiting multi-grain parallelism for efficient selective sweep detection Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7439: 56-68. DOI: 10.1007/978-3-642-33078-0_5  1
2011 Oikonomou A, Astrinakis M, Birbilis T, Pavlidis P, Prassopoulos P. Head trauma by captive bolt gun. Bmj Case Reports. 2011. PMID 22675020 DOI: 10.1136/bcr.09.2011.4809  1
2011 Kotsikoris I, Papas TT, Papanas N, Maras D, Tsiantula P, Pavlidis P, Andrikopoulou M, Kotsiou S, Maltezos E, Bessias N. Characteristics of patients presenting to the vascular emergency department of a tertiary care hospital: a 2-year study. Bmc Research Notes. 4: 481. PMID 22051248 DOI: 10.1186/1756-0500-4-481  1
2011 Tellier A, Laurent SJ, Lainer H, Pavlidis P, Stephan W. Inference of seed bank parameters in two wild tomato species using ecological and genetic data. Proceedings of the National Academy of Sciences of the United States of America. 108: 17052-7. PMID 21949404 DOI: 10.1073/pnas.1111266108  1
2011 French L, Tan PP, Pavlidis P. Large-Scale Analysis of Gene Expression and Connectivity in the Rodent Brain: Insights through Data Integration. Frontiers in Neuroinformatics. 5: 12. PMID 21863139 DOI: 10.3389/Fninf.2011.00012  1
2011 Harvard C, Strong E, Mercier E, Colnaghi R, Alcantara D, Chow E, Martell S, Tyson C, Hrynchak M, McGillivray B, Hamilton S, Marles S, Mhanni A, Dawson AJ, Pavlidis P, et al. Understanding the impact of 1q21.1 copy number variant. Orphanet Journal of Rare Diseases. 6: 54. PMID 21824431 DOI: 10.1186/1750-1172-6-54  1
2011 Portales-Casamar E, Evans A, Wasserman W, Pavlidis P. The NeuroDevNet Neuroinformatics Core. Seminars in Pediatric Neurology. 18: 17-20. PMID 21575836 DOI: 10.1016/j.spen.2011.02.001  1
2011 Gillis J, Pavlidis P. The role of indirect connections in gene networks in predicting function. Bioinformatics (Oxford, England). 27: 1860-6. PMID 21551147 DOI: 10.1093/bioinformatics/btr288  1
2011 Tsarouhas K, Karatzaferi C, Tsitsimpikou C, Haliassos A, Kouretas D, Pavlidis P, Veskoukis A, Adamopoulos S, Kyriakides Z, Constantinou L, Koutedakis Y, Rentoukas E. Effects of walking on heart rate recovery, endothelium modulators and quality of life in patients with heart failure. European Journal of Cardiovascular Prevention and Rehabilitation : Official Journal of the European Society of Cardiology, Working Groups On Epidemiology & Prevention and Cardiac Rehabilitation and Exercise Physiology. 18: 594-600. PMID 21450607 DOI: 10.1177/1741826710397099  1
2011 Gillis J, Pavlidis P. The impact of multifunctional genes on "guilt by association" analysis. Plos One. 6: e17258. PMID 21364756 DOI: 10.1371/journal.pone.0017258  1
2011 Pavlidis P, Forbes A, Bogdanos DP. Antibodies to glycoprotein 2 (GP2) in patients with inflammatory bowel diseases from UK. Clinica Chimica Acta; International Journal of Clinical Chemistry. 412: 1163-4. PMID 21329686 DOI: 10.1016/j.cca.2011.02.005  1
2011 French L, Pavlidis P. Relationships between gene expression and brain wiring in the adult rodent brain. Plos Computational Biology. 7: e1001049. PMID 21253556 DOI: 10.7490/F1000Research.1007.1  1
2011 Miller KM, Li S, Kaukinen KH, Ginther N, Hammill E, Curtis JM, Patterson DA, Sierocinski T, Donnison L, Pavlidis P, Hinch SG, Hruska KA, Cooke SJ, English KK, Farrell AP. Genomic signatures predict migration and spawning failure in wild Canadian salmon. Science (New York, N.Y.). 331: 214-7. PMID 21233388 DOI: 10.1126/Science.1196901  1
2011 Svetec N, Werzner A, Wilches R, Pavlidis P, Alvarez-Castro JM, Broman KW, Metzler D, Stephan W. Identification of X-linked quantitative trait loci affecting cold tolerance in Drosophila melanogaster and fine mapping by selective sweep analysis. Molecular Ecology. 20: 530-44. PMID 21199023 DOI: 10.1111/J.1365-294X.2010.04951.X  1
2011 Sivridis E, Pavlidis P, Fiska A, Pitsiava D, Giatromanolaki A. Myocardial hypertrophy induces carotid body hyperplasia. Journal of Forensic Sciences. 56: S90-4. PMID 20950315 DOI: 10.1111/j.1556-4029.2010.01582.x  1
2011 Frid S, Pavlidis P, Dracheva S, Byne W. Differential gene expression in schizophrenia and bipolar disorder in the corpus callosum F1000research. 2. DOI: 10.7490/F1000Research.1393.1  0.08
2010 Pavlidis P, Laurent S, Stephan W. msABC: a modification of Hudson's ms to facilitate multi-locus ABC analysis. Molecular Ecology Resources. 10: 723-7. PMID 21565078 DOI: 10.1111/J.1755-0998.2010.02832.X  1
2010 Kotsikoris I, Tzorbatzoglou I, Nikolaou A, Bessias N, Maras D, Papas T, Pavlidis P, Alivizatos V, Andrikopoulos V. Infections in tunneled hemodialysis catheters in the subclavian vein. The Journal of Vascular Access. 11: 364. PMID 21077044  1
2010 Demmer RT, Pavlidis P, Papapanou PN. Bioinformatics techniques in microarray research: applied microarray data analysis using R and SAS software. Methods in Molecular Biology (Clifton, N.J.). 666: 395-417. PMID 20717798 DOI: 10.1007/978-1-60761-820-1_25  1
2010 Gillis J, Mistry M, Pavlidis P. Gene function analysis in complex data sets using ErmineJ. Nature Protocols. 5: 1148-59. PMID 20539290 DOI: 10.1038/Nprot.2010.78  1
2010 Qiao Y, Harvard C, Tyson C, Liu X, Fawcett C, Pavlidis P, Holden JJ, Lewis ME, Rajcan-Separovic E. Outcome of array CGH analysis for 255 subjects with intellectual disability and search for candidate genes using bioinformatics. Human Genetics. 128: 179-94. PMID 20512354 DOI: 10.1007/s00439-010-0837-0  1
2010 Pavlidis P, Jensen JD, Stephan W. Searching for footprints of positive selection in whole-genome SNP data from nonequilibrium populations. Genetics. 185: 907-22. PMID 20407129 DOI: 10.1534/Genetics.110.116459  1
2010 Tsuchimatsu T, Suwabe K, Shimizu-Inatsugi R, Isokawa S, Pavlidis P, Städler T, Suzuki G, Takayama S, Watanabe M, Shimizu KK. Evolution of self-compatibility in Arabidopsis by a mutation in the male specificity gene. Nature. 464: 1342-6. PMID 20400945 DOI: 10.1038/nature08927  1
2010 Sivridis E, Pavlidis P, Stamos C, Giatromanolaki A. Sudden death after myocardial infarction in a high-school athlete. Journal of Forensic Sciences. 55: 1378-9. PMID 20384912 DOI: 10.1111/j.1556-4029.2010.01397.x  1
2010 Mistry M, Pavlidis P. A cross-laboratory comparison of expression profiling data from normal human postmortem brain. Neuroscience. 167: 384-95. PMID 20138973 DOI: 10.1016/J.Neuroscience.2010.01.016  1
2010 Tsarouhas K, Kafantaris I, Antonakopoulos A, Vavetsi S, Pavlidis P, Constantinou LL. Reversible dilated cardiomyopathy due to subclinical hyperthyroidism. Hellenic Journal of Cardiology : Hjc = HellēNikē Kardiologikē EpitheōRēSē. 51: 67-70. PMID 20118048  1
2010 Becanovic K, Pouladi MA, Lim RS, Kuhn A, Pavlidis P, Luthi-Carter R, Hayden MR, Leavitt BR. Transcriptional changes in Huntington disease identified using genome-wide expression profiling and cross-platform analysis. Human Molecular Genetics. 19: 1438-52. PMID 20089533 DOI: 10.1093/Hmg/Ddq018  1
2010 Pavlidis P, Nikolaidis V, Gouveris H, Papadopoulos E, Kekes G, Kouvelas D. Ototoxicity caused by once- and twice-daily administration of amikacin in rabbits. International Journal of Pediatric Otorhinolaryngology. 74: 361-4. PMID 20089318 DOI: 10.1016/j.ijporl.2009.12.018  1
2009 Pavlidis P, Riley C, Mylona E, Vijaynagar B. A young man with bowel obstruction and cachexia. Bmj Case Reports. 2009. PMID 21686778 DOI: 10.1136/bcr.07.2008.0499  1
2009 Pantazatos SP, Li J, Pavlidis P, Lussier YA. Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes. Summit On Translational Bioinformatics. 2009: 85-9. PMID 21347176  1
2009 Rogic S, Pavlidis P. Meta-analysis of kindling-induced gene expression changes in the rat hippocampus. Frontiers in Neuroscience. 3: 53. PMID 20582280 DOI: 10.3389/neuro.15.001.2009  1
2009 Pantazatos SP, Li J, Pavlidis P, Lussier YA. Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes. Cancer Informatics. 8: 75-94. PMID 20495688 DOI: 10.4137/Cin.S1046  1
2009 Maras D, Lioupis C, Moulakakis KG, Sfyroeras G, Pavlidis P, Bountouris I, Bessias N, Andrikopoulos V. Giant abdominal aortic aneurysms: clinical and technical considerations. Acta Chirurgica Belgica. 109: 376-80. PMID 19943596  1
2009 Papapanou PN, Behle JH, Kebschull M, Celenti R, Wolf DL, Handfield M, Pavlidis P, Demmer RT. Subgingival bacterial colonization profiles correlate with gingival tissue gene expression. Bmc Microbiology. 9: 221. PMID 19835625 DOI: 10.1186/1471-2180-9-221  1
2009 Maras D, Papas TT, Gekas CD, Psathas C, Kotsikoris I, Nikolaou A, Pavlidis P, Andrikopoulos V. Combined endovascular/surgical management of a ruptured para-anastomotic aneurysm of the left common iliac artery. The Open Cardiovascular Medicine Journal. 3: 143-6. PMID 19834625 DOI: 10.2174/1874192400903010143  1
2009 Gillis J, Pavlidis P. A methodology for the analysis of differential coexpression across the human lifespan. Bmc Bioinformatics. 10: 306. PMID 19772654 DOI: 10.1186/1471-2105-10-306  1
2009 French L, Lane S, Xu L, Pavlidis P. Automated recognition of brain region mentions in neuroscience literature. Frontiers in Neuroinformatics. 3: 29. PMID 19750194 DOI: 10.3389/Neuro.11.029.2009  1
2009 Aid-Pavlidis T, Pavlidis P, Timmusk T. Meta-coexpression conservation analysis of microarray data: a "subset" approach provides insight into brain-derived neurotrophic factor regulation. Bmc Genomics. 10: 420. PMID 19737418 DOI: 10.1186/1471-2164-10-420  1
2009 Barnes MG, Grom AA, Thompson SD, Griffin TA, Pavlidis P, Itert L, Fall N, Sowders DP, Hinze CH, Aronow BJ, Luyrink LK, Srivastava S, Ilowite NT, Gottlieb BS, Olson JC, et al. Subtype-specific peripheral blood gene expression profiles in recent-onset juvenile idiopathic arthritis. Arthritis and Rheumatism. 60: 2102-12. PMID 19565513 DOI: 10.1002/art.24601  1
2009 Griffin TA, Barnes MG, Ilowite NT, Olson JC, Sherry DD, Gottlieb BS, Aronow BJ, Pavlidis P, Hinze CH, Thornton S, Thompson SD, Grom AA, Colbert RA, Glass DN. Gene expression signatures in polyarticular juvenile idiopathic arthritis demonstrate disease heterogeneity and offer a molecular classification of disease subsets. Arthritis and Rheumatism. 60: 2113-23. PMID 19565504 DOI: 10.1002/art.24534  1
2009 French L, Lane S, Law T, Xu L, Pavlidis P. Application and evaluation of automated semantic annotation of gene expression experiments. Bioinformatics (Oxford, England). 25: 1543-9. PMID 19376825 DOI: 10.1093/Bioinformatics/Btp259  1
2009 Svetec N, Pavlidis P, Stephan W. Recent strong positive selection on Drosophila melanogaster HDAC6, a gene encoding a stress surveillance factor, as revealed by population genomic analysis. Molecular Biology and Evolution. 26: 1549-56. PMID 19349642 DOI: 10.1093/Molbev/Msp065  1
2009 Ware CB, Wang L, Mecham BH, Shen L, Nelson AM, Bar M, Lamba DA, Dauphin DS, Buckingham B, Askari B, Lim R, Tewari M, Gartler SM, Issa JP, Pavlidis P, et al. Histone deacetylase inhibition elicits an evolutionarily conserved self-renewal program in embryonic stem cells. Cell Stem Cell. 4: 359-69. PMID 19341625 DOI: 10.1016/J.Stem.2009.03.001  1
2009 Johnsen JM, Teschke M, Pavlidis P, McGee BM, Tautz D, Ginsburg D, Baines JF. Selection on cis-regulatory variation at B4galnt2 and its influence on von Willebrand factor in house mice. Molecular Biology and Evolution. 26: 567-78. PMID 19088380 DOI: 10.1093/molbev/msn284  1
2009 Kebschull M, Demmer R, Behle JH, Pollreisz A, Heidemann J, Belusko PB, Celenti R, Pavlidis P, Papapanou PN. Granulocyte chemotactic protein 2 (gcp-2/cxcl6) complements interleukin-8 in periodontal disease. Journal of Periodontal Research. 44: 465-71. PMID 18842116 DOI: 10.1111/J.1600-0765.2008.01134.X  1
2009 Albuquerque P, Pavlidis P, Chatow U, Chen KY, Jamal Z, Koh KW. Use of web analytics to estimate adoption of a novel web service for magazine self-publishing: MagCloud Acm International Conference Proceeding Series. 311-316. DOI: 10.1145/1593254.1593302  1
2008 Koutouzis M, Sfyroeras G, Moulakakis KG, Kontaras K, Nikolaou N, Besias N, Maras D, Pavlidis P, Andrikopoulos V, Kyriakides Z. Cardiac troponin I in patients with acute upper and lower limb ischemia. Vasa. Zeitschrift FüR GefäSskrankheiten. 37: 327-32. PMID 19003742 DOI: 10.1024/0301-1526.37.4.327  1
2008 Demmer RT, Behle JH, Wolf DL, Handfield M, Kebschull M, Celenti R, Pavlidis P, Papapanou PN. Transcriptomes in healthy and diseased gingival tissues. Journal of Periodontology. 79: 2112-24. PMID 18980520 DOI: 10.1902/Jop.2008.080139  1
2008 Paraskevas KI, Bessias N, Pavlidis P, Maras D, Papas TT, Gekas CD, Andrikopoulos V. Erectile dysfunction in stroke patients: a multifactorial problem with important psychosocial consequences. International Urology and Nephrology. 40: 1113-4. PMID 18683073 DOI: 10.1007/s11255-008-9425-9  1
2008 Mistry M, Pavlidis P. Gene Ontology term overlap as a measure of gene functional similarity. Bmc Bioinformatics. 9: 327. PMID 18680592 DOI: 10.1186/1471-2105-9-327  1
2008 Pavlidis P, Hutter S, Stephan W. A population genomic approach to map recent positive selection in model species. Molecular Ecology. 17: 3585-98. PMID 18627454 DOI: 10.1111/j.1365-294X.2008.03852.x  1
2008 Paraskevas KI, Papas TT, Pavlidis P, Bessias N, Andrikopoulos V. The importance of conservative measures in peripheral arterial disease: an update. Angiology. 59: 529-33. PMID 18504264 DOI: 10.1177/0003319708318381  1
2008 Stark KL, Xu B, Bagchi A, Lai WS, Liu H, Hsu R, Wan X, Pavlidis P, Mills AA, Karayiorgou M, Gogos JA. Altered brain microRNA biogenesis contributes to phenotypic deficits in a 22q11-deletion mouse model. Nature Genetics. 40: 751-60. PMID 18469815 DOI: 10.1038/Ng.138  1
2008 Psillas G, Pavlidis P, Karvelis I, Kekes G, Vital V, Constantinidis J. Potential efficacy of early treatment of acute acoustic trauma with steroids and piracetam after gunshot noise. European Archives of Oto-Rhino-Laryngology : Official Journal of the European Federation of Oto-Rhino-Laryngological Societies (Eufos) : Affiliated With the German Society For Oto-Rhino-Laryngology - Head and Neck Surgery. 265: 1465-9. PMID 18463885 DOI: 10.1007/s00405-008-0689-6  1
2008 Tsioufis C, Syrseloudis D, Dimitriadis K, Thomopoulos C, Tsiachris D, Pavlidis P, Selima M, Kallikazaros I, Stefanadis C. Disturbed circadian blood pressure rhythm and C-reactive protein in essential hypertension. Journal of Human Hypertension. 22: 501-8. PMID 18385743 DOI: 10.1038/jhh.2008.20  1
2007 Kotsis T, Moulakakis K, Pavlidis P, Boudouris I, Pomoni M, Georgakis P. Misleading findings of subclavian artery and vein transection. Vasa. Zeitschrift FüR GefäSskrankheiten. 36: 220-3. PMID 18019282 DOI: 10.1024/0301-1526.36.3.220  1
2007 French L, Pavlidis P. Informatics in neuroscience. Briefings in Bioinformatics. 8: 446-56. PMID 17932081 DOI: 10.1093/Bib/Bbm047  1
2007 Wan X, Pavlidis P. Sharing and reusing gene expression profiling data in neuroscience. Neuroinformatics. 5: 161-75. PMID 17917127 DOI: 10.1007/S12021-007-0012-5  1
2007 Georgiadis GS, Bessias NC, Pavlidis PM, Pomoni M, Batakis N, Lazarides MK. Infected false aneurysms of the limbs secondary to chronic intravenous drug abuse: analysis of perioperative considerations and operative outcomes. Surgery Today. 37: 837-44. PMID 17879032 DOI: 10.1007/s00595-006-3495-z  1
2007 Papapanou PN, Sedaghatfar MH, Demmer RT, Wolf DL, Yang J, Roth GA, Celenti R, Belusko PB, Lalla E, Pavlidis P. Periodontal therapy alters gene expression of peripheral blood monocytes. Journal of Clinical Periodontology. 34: 736-47. PMID 17716309 DOI: 10.1111/J.1600-051X.2007.01113.X  1
2007 Moulakakis KG, Sfyroeras G, Pavlidis P, Besias N, Maras D, Andrikopoulos V. Hypercoagulable state due to alcohol-paracetamol syndrome producing acute limb ischemia. Vascular and Endovascular Surgery. 41: 362-5. PMID 17704344 DOI: 10.1177/1538574407302731  1
2007 Schmidt-Ott KM, Masckauchan TN, Chen X, Hirsh BJ, Sarkar A, Yang J, Paragas N, Wallace VA, Dufort D, Pavlidis P, Jagla B, Kitajewski J, Barasch J. beta-catenin/TCF/Lef controls a differentiation-associated transcriptional program in renal epithelial progenitors. Development (Cambridge, England). 134: 3177-90. PMID 17693601 DOI: 10.1242/Dev.006544  1
2007 Muchir A, Pavlidis P, Bonne G, Hayashi YK, Worman HJ. Activation of MAPK in hearts of EMD null mice: similarities between mouse models of X-linked and autosomal dominant Emery Dreifuss muscular dystrophy. Human Molecular Genetics. 16: 1884-95. PMID 17567779 DOI: 10.1093/Hmg/Ddm137  1
2007 Muchir A, Pavlidis P, Decostre V, Herron AJ, Arimura T, Bonne G, Worman HJ. Activation of MAPK pathways links LMNA mutations to cardiomyopathy in Emery-Dreifuss muscular dystrophy. The Journal of Clinical Investigation. 117: 1282-93. PMID 17446932 DOI: 10.1172/Jci29042  1
2007 Erraji-Benchekroun L, Lisanby SH, Arango V, Galfalvy H, Pavlidis P, Underwood MD. Effect of Electroconvulsive Shock and Magnetic Seizure on Gene Expression Profiles in the Prefrontal Cortex of the Rhesus Monkey The Journal of Ect. 23: 53. DOI: 10.1097/01.Yct.0000264356.75257.80  0.01
2007 Muchir A, Pavlidis P, Decostre V, Herron A, Arimura T, Hayashi Y, Bonne G, Worman H. G.P.5.10 MAPK signaling pathway is commonly activated in hearts of mouse models of autosomal dominant and X-linked Emery–Dreifuss muscular dystrophy Neuromuscular Disorders. 17: 800. DOI: 10.1016/J.Nmd.2007.06.133  0.01
2006 Anninos P, Kotini A, Adamopoulos A, Hatzimihael A, Kekes G, Pavlidis P, Tamiolakis D. Identification of taste quality with the use of meg. Journal of Integrative Neuroscience. 5: 535-40. PMID 17245821 DOI: 10.1142/S0219635206001318  1
2006 Varrault A, Gueydan C, Delalbre A, Bellmann A, Houssami S, Aknin C, Severac D, Chotard L, Kahli M, Le Digarcher A, Pavlidis P, Journot L. Zac1 regulates an imprinted gene network critically involved in the control of embryonic growth. Developmental Cell. 11: 711-22. PMID 17084362 DOI: 10.1016/j.devcel.2006.09.003  1
2006 Lai WS, Xu B, Westphal KG, Paterlini M, Olivier B, Pavlidis P, Karayiorgou M, Gogos JA. Akt1 deficiency affects neuronal morphology and predisposes to abnormalities in prefrontal cortex functioning. Proceedings of the National Academy of Sciences of the United States of America. 103: 16906-11. PMID 17077150 DOI: 10.1073/Pnas.0604994103  1
2006 Skourtis G, Bountouris I, Papacharalambous G, Mahera E, Besias N, Antoniou I, Pavlidis P, Maras D, Panoussis P, Andrikopoulos V. Anastomotic pseudoaneurysms: our experience with 49 cases. Annals of Vascular Surgery. 20: 582-9. PMID 17061054 DOI: 10.1007/s10016-006-9070-7  1
2006 Pavlidis P, Poirazi P. Individualized markers optimize class prediction of microarray data. Bmc Bioinformatics. 7: 345. PMID 16842618 DOI: 10.1186/1471-2105-7-345  1
2006 Zheng Z, Pavlidis P, Chua S, D'Agati VD, Gharavi AG. An ancestral haplotype defines susceptibility to doxorubicin nephropathy in the laboratory mouse. Journal of the American Society of Nephrology : Jasn. 17: 1796-800. PMID 16775033 DOI: 10.1681/Asn.2005121373  1
2006 Pavlidis P, Vasilakakis M, Barbas E. Effect of substrate, auxin source and auxin overproducing mutants of ectomycorrhiza Hebeloma cylindrosporum romagnesi in rooting of two quince clones (EM a and BA 29) microshoots Acta Horticulturae. 725: 271-278.  1
2006 Menegaki M, Pavlidis P, Tamiolakis D. Human duty in fetal loss: A study of fetal research on hematopoiesis Oncologia. 29: 13-17.  1
2006 Menegaki M, Pavlidis P, Tamiolakis D. Practical appraisal to ethics in fetal death: A case of anasarca Oncologia. 29: 81-84.  1
2005 Lee HK, Braynen W, Keshav K, Pavlidis P. ErmineJ: tool for functional analysis of gene expression data sets. Bmc Bioinformatics. 6: 269. PMID 16280084 DOI: 10.1186/1471-2105-6-269  1
2005 Barnes M, Freudenberg J, Thompson S, Aronow B, Pavlidis P. Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms. Nucleic Acids Research. 33: 5914-23. PMID 16237126 DOI: 10.1093/Nar/Gki890  1
2005 Paterlini M, Zakharenko SS, Lai WS, Qin J, Zhang H, Mukai J, Westphal KG, Olivier B, Sulzer D, Pavlidis P, Siegelbaum SA, Karayiorgou M, Gogos JA. Transcriptional and behavioral interaction between 22q11.2 orthologs modulates schizophrenia-related phenotypes in mice. Nature Neuroscience. 8: 1586-94. PMID 16234811 DOI: 10.1038/Nn1562  1
2005 Barr GA, Gao P, Wang S, Cheng J, Qin J, Sibille EL, Pavlidis P. Microarray analysis of gene expression following the formalin test in the infant rat. Pain. 117: 6-18. PMID 16043289 DOI: 10.1016/J.Pain.2005.04.024  1
2005 Erraji-Benchekroun L, Underwood MD, Arango V, Galfalvy H, Pavlidis P, Smyrniotopoulos P, Mann JJ, Sibille E. Molecular aging in human prefrontal cortex is selective and continuous throughout adult life. Biological Psychiatry. 57: 549-58. PMID 15737671 DOI: 10.1016/J.Biopsych.2004.10.034  1
2005 Zheng Z, Schmidt-Ott KM, Chua S, Foster KA, Frankel RZ, Pavlidis P, Barasch J, D'Agati VD, Gharavi AG. A Mendelian locus on chromosome 16 determines susceptibility to doxorubicin nephropathy in the mouse. Proceedings of the National Academy of Sciences of the United States of America. 102: 2502-7. PMID 15699352 DOI: 10.1073/Pnas.0409786102  1
2005 Tamiolakis D, Venizelos J, Lambropoulou M, Nikolaidou S, Alexiadis G, Pavlidis P, Jivannakis T, Menegaki M, Papadopoulos N. Immunohistochemical characterization of human fetal pancreas and pancreatic ductal adenocarcinoma. A study of somatostatin antibody NCL-SOMATOp Oncologia. 28: 21-27.  1
2004 Pavlidis P, Qin J, Arango V, Mann JJ, Sibille E. Using the gene ontology for microarray data mining: a comparison of methods and application to age effects in human prefrontal cortex. Neurochemical Research. 29: 1213-22. PMID 15176478 DOI: 10.1023/B:NERE.0000023608.29741.45  1
2004 Lee HK, Hsu AK, Sajdak J, Qin J, Pavlidis P. Coexpression analysis of human genes across many microarray data sets. Genome Research. 14: 1085-94. PMID 15173114 DOI: 10.1101/Gr.1910904  1
2004 Verbitsky M, Yonan AL, Malleret G, Kandel ER, Gilliam TC, Pavlidis P. Altered hippocampal transcript profile accompanies an age-related spatial memory deficit in mice. Learning & Memory (Cold Spring Harbor, N.Y.). 11: 253-60. PMID 15169854 DOI: 10.1101/Lm.68204  1
2004 Papapanou PN, Abron A, Verbitsky M, Picolos D, Yang J, Qin J, Fine JB, Pavlidis P. Gene expression signatures in chronic and aggressive periodontitis: a pilot study. European Journal of Oral Sciences. 112: 216-23. PMID 15154918 DOI: 10.1111/J.1600-0722.2004.00124.X  1
2004 Barnes MG, Aronow BJ, Luyrink LK, Moroldo MB, Pavlidis P, Passo MH, Grom AA, Hirsch R, Giannini EH, Colbert RA, Glass DN, Thompson SD. Gene expression in juvenile arthritis and spondyloarthropathy: pro-angiogenic ELR+ chemokine genes relate to course of arthritis. Rheumatology (Oxford, England). 43: 973-9. PMID 15150433 DOI: 10.1093/Rheumatology/Keh224  1
2004 Pavlidis P, Wapinski I, Noble WS. Support vector machine classification on the web. Bioinformatics (Oxford, England). 20: 586-7. PMID 14990457 DOI: 10.1093/bioinformatics/btg461  1
2004 Li D, Ma W, Sun F, Pavlidis P, Spector A. Cluster analysis of genes with significant change in expression in cells conditioned to survive TBOOH. Experimental Eye Research. 78: 301-8. PMID 14729362 DOI: 10.1016/j.exer.2003.10.016  1
2004 Sibille E, Arango V, Galfalvy HC, Pavlidis P, Erraji-Benchekroun L, Ellis SP, John Mann J. Gene expression profiling of depression and suicide in human prefrontal cortex. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. 29: 351-61. PMID 14603265 DOI: 10.1038/sj.npp.1300335  1
2004 Pavlidis P. Review of Molecular computing edited by T. Sienko, A. Adamatzky, N.G. Rambidi, and M. Conrad. MIT Press 2003 Journal of Biomedical Informatics. 37: 54-55. DOI: 10.1016/J.Jbi.2004.01.001  0.01
2003 Yonan AL, Palmer AA, Smith KC, Feldman I, Lee HK, Yonan JM, Fischer SG, Pavlidis P, Gilliam TC. Bioinformatic analysis of autism positional candidate genes using biological databases and computational gene network prediction. Genes, Brain, and Behavior. 2: 303-20. PMID 14606695 DOI: 10.1034/J.1601-183X.2003.00041.X  1
2003 Pavlidis P. Using ANOVA for gene selection from microarray studies of the nervous system. Methods (San Diego, Calif.). 31: 282-9. PMID 14597312 DOI: 10.1016/S1046-2023(03)00157-9  1
2003 Pavlidis P, Li Q, Noble WS. The effect of replication on gene expression microarray experiments. Bioinformatics (Oxford, England). 19: 1620-7. PMID 12967957 DOI: 10.1093/bioinformatics/btg227  1
2003 Galfalvy HC, Erraji-Benchekroun L, Smyrniotopoulos P, Pavlidis P, Ellis SP, Mann JJ, Sibille E, Arango V. Sex genes for genomic analysis in human brain: internal controls for comparison of probe level data extraction. Bmc Bioinformatics. 4: 37. PMID 12962547 DOI: 10.1186/1471-2105-4-37  1
2003 Yang YC, Piek E, Zavadil J, Liang D, Xie D, Heyer J, Pavlidis P, Kucherlapati R, Roberts AB, Böttinger EP. Hierarchical model of gene regulation by transforming growth factor beta. Proceedings of the National Academy of Sciences of the United States of America. 100: 10269-74. PMID 12930890 DOI: 10.1073/Pnas.1834070100  1
2003 Chen A, Muzzio IA, Malleret G, Bartsch D, Verbitsky M, Pavlidis P, Yonan AL, Vronskaya S, Grody MB, Cepeda I, Gilliam TC, Kandel ER. Inducible enhancement of memory storage and synaptic plasticity in transgenic mice expressing an inhibitor of ATF4 (CREB-2) and C/EBP proteins. Neuron. 39: 655-69. PMID 12925279 DOI: 10.1016/S0896-6273(03)00501-4  1
2003 Segal NH, Pavlidis P, Antonescu CR, Maki RG, Noble WS, DeSantis D, Woodruff JM, Lewis JJ, Brennan MF, Houghton AN, Cordon-Cardo C. Classification and subtype prediction of adult soft tissue sarcoma by functional genomics. The American Journal of Pathology. 163: 691-700. PMID 12875988 DOI: 10.1016/S0002-9440(10)63696-6  1
2003 Segal NH, Pavlidis P, Noble WS, Antonescu CR, Viale A, Wesley UV, Busam K, Gallardo H, DeSantis D, Brennan MF, Cordon-Cardo C, Wolchok JD, Houghton AN. Classification of clear-cell sarcoma as a subtype of melanoma by genomic profiling. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 21: 1775-81. PMID 12721254 DOI: 10.1200/Jco.2003.10.108  1
2003 Pavlidis P, Noble WS. Matrix2png: a utility for visualizing matrix data. Bioinformatics (Oxford, England). 19: 295-6. PMID 12538257 DOI: 10.1093/bioinformatics/19.2.295  1
2002 Spector A, Li D, Ma W, Sun F, Pavlidis P. Differential amplification of gene expression in lens cell lines conditioned to survive peroxide stress. Investigative Ophthalmology & Visual Science. 43: 3251-64. PMID 12356832  1
2002 Pavlidis P, Weston J, Cai J, Noble WS. Learning gene functional classifications from multiple data types. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 9: 401-11. PMID 12015889 DOI: 10.1089/10665270252935539  1
2002 Pavlidis P, Lewis DP, Noble WS. Exploring gene expression data with class scores. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 474-85. PMID 11928500  1
2002 Schroder AJ, Pavlidis P, Arimura A, Capece D, Rothman PB. Cutting edge: STAT6 serves as a positive and negative regulator of gene expression in IL-4-stimulated B lymphocytes. Journal of Immunology (Baltimore, Md. : 1950). 168: 996-1000. PMID 11801631 DOI: 10.4049/Jimmunol.168.3.996  1
2001 Pavlidis P, Noble WS. Analysis of strain and regional variation in gene expression in mouse brain. Genome Biology. 2: RESEARCH0042. PMID 11597334 DOI: 10.1186/Gb-2001-2-10-Research0042  1
2001 Muhle RA, Pavlidis P, Grundy WN, Hirsch E. A high-throughput study of gene expression in preterm labor with a subtractive microarray approach. American Journal of Obstetrics and Gynecology. 185: 716-24. PMID 11568803 DOI: 10.1067/mob.2001.117183  1
2001 Montgomery JM, Pavlidis P, Madison DV. Pair recordings reveal all-silent synaptic connections and the postsynaptic expression of long-term potentiation. Neuron. 29: 691-701. PMID 11301028 DOI: 10.1016/S0896-6273(01)00244-6  1
2001 Pavlidis P, Furey TS, Liberto M, Haussler D, Grundy WN. Promoter region-based classification of genes. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 151-63. PMID 11262936  1
2001 Pavlidis P, Cai J, Weston J, Grundy WN. Gene functional classification from heterogeneous data Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 249-255.  1
2000 Santoro B, Chen S, Luthi A, Pavlidis P, Shumyatsky GP, Tibbs GR, Siegelbaum SA. Molecular and functional heterogeneity of hyperpolarization-activated pacemaker channels in the mouse CNS. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 20: 5264-75. PMID 10884310 DOI: 10.1523/Jneurosci.20-14-05264.2000  1
2000 Pavlidis P, Montgomery J, Madison DV. Presynaptic protein kinase activity supports long-term potentiation at synapses between individual hippocampal neurons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 20: 4497-505. PMID 10844019 DOI: 10.1523/Jneurosci.20-12-04497.2000  1
1999 Pavlidis P, Madison DV. Synaptic transmission in pair recordings from CA3 pyramidal cells in organotypic culture. Journal of Neurophysiology. 81: 2787-97. PMID 10368397 DOI: 10.1152/Jn.1999.81.6.2787  1
1999 Meregaglia DR, Piglionica MR, Ferrari S, Strada M, Deleo G, Pavlidis P, Biasi GM. [Transluminal treatment in aneurysm of the abdominal aorta. Role of diagnostic imaging]. La Radiologia Medica. 97: 153-9. PMID 10363057  1
1997 Kalfas C, Pavlidis P, Galoussis E. Inelastic behaviour of shear connection by a method based on FEM Journal of Constructional Steel Research. 44: 107-114.  1
1996 Haley JE, Schaible E, Pavlidis P, Murdock A, Madison DV. Basal and apical synapses of CA1 pyramidal cells employ different LTP induction mechanisms. Learning & Memory (Cold Spring Harbor, N.Y.). 3: 289-95. PMID 10456098 DOI: 10.1101/Lm.3.4.289  1
1995 Pavlidis P, Tanouye MA. Seizures and failures in the giant fiber pathway of Drosophila bang-sensitive paralytic mutants. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 15: 5810-9. PMID 7643221 DOI: 10.1523/Jneurosci.15-08-05810.1995  1
1995 Johne A, Pavlidis P. Product innovation in banking: How marketing works Journal of Marketing Management. 11: 797-805. DOI: 10.1080/0267257X.1995.9964391  1
1994 Pavlidis P, Ramaswami M, Tanouye MA. The Drosophila easily shocked gene: a mutation in a phospholipid synthetic pathway causes seizure, neuronal failure, and paralysis. Cell. 79: 23-33. PMID 7923374 DOI: 10.1016/0092-8674(94)90397-2  1
1970 Maroudis D, Bezos E, Lympiotakos P, Douvara G, Pavlidis P, Siderakis K. [Serotonin in myomas of the uterus]. Zentralblatt FüR GynäKologie. 92: 223-5. PMID 5516078  0.01
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