Zhongyue John Yang
Affiliations: | Vanderbilt University, Nashville, TN |
Area:
Computational EnzymologyGoogle:
"Zhongyue Yang"Mean distance: (not calculated yet)
Parents
Sign in to add mentor| Heather Kulik | grad student | Vanderbilt | |
| Kendall N. Houk | grad student | 2013-2017 | UCLA |
Children
Sign in to add trainee| Matthew Tremblay | research assistant | 2020-2022 | Vanderbilt |
| Qianzhen Shao | grad student | 2021-2026 | |
| Yaoyukun Jiang | post-doc | 2021- |
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Publications
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| Jiang Y, Ding N, Shao Q, et al. (2023) Substrate Positioning Dynamics Involves a Non-Electrostatic Component to Mediate Catalysis. The Journal of Physical Chemistry Letters. 14: 11480-11489 |
| Ran X, Jiang Y, Shao Q, et al. (2023) EnzyKR: a chirality-aware deep learning model for predicting the outcomes of the hydrolase-catalyzed kinetic resolution. Chemical Science. 14: 12073-12082 |
| Yang ZJ, Shao Q, Jiang Y, et al. (2023) Mutexa: A Computational Ecosystem for Intelligent Protein Engineering. Journal of Chemical Theory and Computation |
| Shao Q, Jiang Y, Yang ZJ. (2023) EnzyHTP Computational Directed Evolution with Adaptive Resource Allocation. Journal of Chemical Information and Modeling |
| Shin W, Ran X, Yang ZJ. (2023) Accelerated Entropic Path Sampling with a Bidirectional Generative Adversarial Network. The Journal of Physical Chemistry. B. 127: 4254-4260 |
| Juarez RJ, Jiang Y, Tremblay M, et al. (2023) LassoHTP: A High-Throughput Computational Tool for Lasso Peptide Structure Construction and Modeling. Journal of Chemical Information and Modeling. 63: 522-530 |
| Jiang Y, Stull SL, Shao Q, et al. (2022) Convergence in determining enzyme functional descriptors across Kemp eliminase variants. Electronic Structure (Bristol, England). 4 |
| Jiang Y, Ran X, Yang ZJ. (2022) Data-Driven Enzyme Engineering to Identify Function-Enhancing Enzymes. Protein Engineering, Design & Selection : Peds |
| Fu B, Nazemi A, Levin BJ, et al. (2022) Mechanistic Studies of a Skatole-Forming Glycyl Radical Enzyme Suggest Reaction Initiation via Hydrogen Atom Transfer. Journal of the American Chemical Society. 144: 11110-11119 |
| Yang Z, Hajlasz N, Kulik HJ. (2022) Computational Modeling of Conformer Stability in Benenodin-1, a Thermally Actuated Lasso Peptide Switch. The Journal of Physical Chemistry. B |