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Mallory Embree - Publications

Affiliations: 
2014 Bioengineering University of California, San Diego, La Jolla, CA 
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10 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Movahedi NS, Embree M, Nagarajan H, Zengler K, Chitsaz H. Efficient Synergistic Single-Cell Genome Assembly. Frontiers in Bioengineering and Biotechnology. 4: 42. PMID 27243002 DOI: 10.3389/Fbioe.2016.00042  0.628
2015 Embree M, Liu JK, Al-Bassam MM, Zengler K. Networks of energetic and metabolic interactions define dynamics in microbial communities. Proceedings of the National Academy of Sciences of the United States of America. PMID 26621749 DOI: 10.1073/Pnas.1506034112  0.372
2015 Chen P, Torralba M, Tan J, Embree M, Zengler K, Stärkel P, van Pijkeren JP, DePew J, Loomba R, Ho SB, Bajaj JS, Mutlu EA, Keshavarzian A, Tsukamoto H, Nelson KE, et al. Supplementation of saturated long-chain fatty acids maintains intestinal eubiosis and reduces ethanol-induced liver injury in mice. Gastroenterology. 148: 203-214.e16. PMID 25239591 DOI: 10.1053/J.Gastro.2014.09.014  0.524
2014 Embree M, Qiu Y, Shieu W, Nagarajan H, O'Neil R, Lovley D, Zengler K. The iron stimulon and fur regulon of Geobacter sulfurreducens and their role in energy metabolism. Applied and Environmental Microbiology. 80: 2918-27. PMID 24584254 DOI: 10.1128/Aem.03916-13  0.616
2014 Embree M, Nagarajan H, Movahedi N, Chitsaz H, Zengler K. Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community. The Isme Journal. 8: 757-67. PMID 24152715 DOI: 10.1038/Ismej.2013.187  0.667
2014 Rotaru AE, Shrestha PM, Liu F, Shrestha M, Shrestha D, Embree M, Zengler K, Wardman C, Nevin KP, Lovley DR. A new model for electron flow during anaerobic digestion: Direct interspecies electron transfer to Methanosaeta for the reduction of carbon dioxide to methane Energy and Environmental Science. 7: 408-415. DOI: 10.1039/C3Ee42189A  0.391
2013 Nagarajan H, Embree M, Rotaru AE, Shrestha PM, Feist AM, Palsson BØ, Lovley DR, Zengler K. Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association. Nature Communications. 4: 2809. PMID 24264237 DOI: 10.1038/Ncomms3809  0.68
2013 Qiu Y, Nagarajan H, Embree M, Shieu W, Abate E, Juárez K, Cho BK, Elkins JG, Nevin KP, Barrett CL, Lovley DR, Palsson BO, Zengler K. Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks. Nature Communications. 4: 1755. PMID 23612296 DOI: 10.1038/Ncomms2743  0.647
2013 Gong Y, Ebrahim A, Feist AM, Embree M, Zhang T, Lovley D, Zengler K. Sulfide-driven microbial electrosynthesis. Environmental Science & Technology. 47: 568-73. PMID 23252645 DOI: 10.1021/Es303837J  0.656
2011 Cho BK, Federowicz SA, Embree M, Park YS, Kim D, Palsson BØ. The PurR regulon in Escherichia coli K-12 MG1655. Nucleic Acids Research. 39: 6456-64. PMID 21572102 DOI: 10.1093/Nar/Gkr307  0.605
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