Boyko Kakaradov, Ph.D. - Publications

Affiliations: 
Bioinformatics University of California, San Diego, La Jolla, CA 
Area:
RNA processing, neurodevelopment, neurodegeneration, computational biology

12 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Merico D, Spickett C, O'Hara M, Kakaradov B, Deshwar AG, Fradkin P, Gandhi S, Gao J, Grant S, Kron K, Schmitges FW, Shalev Z, Sun M, Verby M, Cahill M, et al. variant c.1934T > G p.Met645Arg causes Wilson disease by promoting exon 6 skipping. Npj Genomic Medicine. 5: 16. PMID 32284880 DOI: 10.1038/S41525-020-0123-6  0.338
2017 Tang H, Kirkness EF, Lippert C, Biggs WH, Fabani M, Guzman E, Ramakrishnan S, Lavrenko V, Kakaradov B, Hou C, Hicks B, Heckerman D, Och FJ, Caskey CT, Venter JC, et al. Profiling of Short-Tandem-Repeat Disease Alleles in 12,632 Human Whole Genomes. American Journal of Human Genetics. 101: 700-715. PMID 29100084 DOI: 10.1016/J.Ajhg.2017.09.013  0.318
2017 Song Y, Botvinnik OB, Lovci MT, Kakaradov B, Liu P, Xu JL, Yeo GW. Single-Cell Alternative Splicing Analysis with Expedition Reveals Splicing Dynamics during Neuron Differentiation. Molecular Cell. PMID 28673540 DOI: 10.1016/J.Molcel.2017.06.003  0.528
2017 Kakaradov B, Arsenio J, Widjaja CE, He Z, Aigner S, Metz PJ, Yu B, Wehrens EJ, Lopez J, Kim SH, Zuniga EI, Goldrath AW, Chang JT, Yeo GW. Early transcriptional and epigenetic regulation of CD8(+) T cell differentiation revealed by single-cell RNA sequencing. Nature Immunology. PMID 28218746 DOI: 10.1038/Ni.3688  0.616
2017 Gylfe AE, Shinbrot E, Kakaradov B, Delport W, Lau CK, Krishnan S, Perlina A, Natarajan TG, Sainger R, Pelak K, Choppa P, Cooc J, Biggs W, Smith HL, Perkins B, et al. Tumor profiling from whole-genome and whole transcriptome sequencing to uncover gene fusions and structural variations in clinically relevant cancer genes. Journal of Clinical Oncology. 35: e23118-e23118. DOI: 10.1200/Jco.2017.35.15_Suppl.E23118  0.341
2016 Bardy C, van den Hurk M, Kakaradov B, Erwin JA, Jaeger BN, Hernandez RV, Eames T, Paucar AA, Gorris M, Marchand C, Jappelli R, Barron J, Bryant AK, Kellogg M, Lasken RS, et al. Predicting the functional states of human iPSC-derived neurons with single-cell RNA-seq and electrophysiology. Molecular Psychiatry. PMID 27698428 DOI: 10.1038/Mp.2016.158  0.55
2015 Arsenio J, Kakaradov B, Metz PJ, Yeo GW, Chang JT. Reply to: "CD8(+) T cell diversification by asymmetric cell division". Nature Immunology. 16: 893-4. PMID 26287585 DOI: 10.1038/Ni.3234  0.581
2015 Metz PJ, Arsenio J, Kakaradov B, Kim SH, Remedios KA, Oakley K, Akimoto K, Ohno S, Yeo GW, Chang JT. Regulation of asymmetric division and CD8+ T lymphocyte fate specification by protein kinase Cζ and protein kinase Cλ/ι. Journal of Immunology (Baltimore, Md. : 1950). 194: 2249-59. PMID 25617472 DOI: 10.4049/Jimmunol.1401652  0.559
2014 Lo C, Kakaradov B, Lokshtanov D, Boucher C. SeeSite: Characterizing Relationships between Splice Junctions and Splicing Enhancers. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 11: 648-56. PMID 26356335 DOI: 10.1109/Tcbb.2014.2304294  0.368
2014 Arsenio J, Kakaradov B, Metz PJ, Kim SH, Yeo GW, Chang JT. Early specification of CD8+ T lymphocyte fates during adaptive immunity revealed by single-cell gene-expression analyses. Nature Immunology. 15: 365-72. PMID 24584088 DOI: 10.1038/Ni.2842  0.584
2014 Washburn MC, Kakaradov B, Sundararaman B, Wheeler E, Hoon S, Yeo GW, Hundley HA. The dsRBP and inactive editor ADR-1 utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome. Cell Reports. 6: 599-607. PMID 24508457 DOI: 10.1016/J.Celrep.2014.01.011  0.497
2012 Kakaradov B, Xiong HY, Lee LJ, Jojic N, Frey BJ. Challenges in estimating percent inclusion of alternatively spliced junctions from RNA-seq data. Bmc Bioinformatics. 13: S11. PMID 22537040 DOI: 10.1186/1471-2105-13-S6-S11  0.382
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