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Jake K. Byrnes, Ph.D. - Publications

Affiliations: 
University of Chicago, Chicago, IL 
Area:
Molecular Evolution
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16/25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Wright KM, Rand KA, Kermany A, Noto K, Curtis D, Garrigan D, Slinkov D, Dorfman I, Granka JM, Byrnes J, Myres N, Ball CA, Ruby JG. A Prospective Analysis of Genetic Variants Associated with Human Lifespan. G3 (Bethesda, Md.). 9: 2863-2878. PMID 31484785 DOI: 10.1534/G3.119.400448  0.438
2018 Ruby JG, Wright KM, Rand KA, Kermany A, Noto K, Curtis D, Varner N, Garrigan D, Slinkov D, Dorfman I, Granka JM, Byrnes J, Myres N, Ball C. Estimates of the Heritability of Human Longevity Are Substantially Inflated due to Assortative Mating. Genetics. 210: 1109-1124. PMID 30401766 DOI: 10.1534/Genetics.118.301613  0.307
2017 Han E, Carbonetto P, Curtis RE, Wang Y, Granka JM, Byrnes J, Noto K, Kermany AR, Myres NM, Barber MJ, Rand KA, Song S, Roman T, Battat E, Elyashiv E, et al. Clustering of 770,000 genomes reveals post-colonial population structure of North America. Nature Communications. 8: 14238. PMID 28169989 DOI: 10.1038/Ncomms14238  0.369
2013 Gravel S, Zakharia F, Moreno-Estrada A, Byrnes JK, Muzzio M, Rodriguez-Flores JL, Kenny EE, Gignoux CR, Maples BK, Guiblet W, Dutil J, Via M, Sandoval K, Bedoya G, et al. Reconstructing Native American migrations from whole-genome and whole-exome data. Plos Genetics. 9: e1004023. PMID 24385924 DOI: 10.1371/Journal.Pgen.1004023  0.419
2013 Moreno-Estrada A, Gravel S, Zakharia F, McCauley JL, Byrnes JK, Gignoux CR, Ortiz-Tello PA, Martínez RJ, Hedges DJ, Morris RW, Eng C, Sandoval K, Acevedo-Acevedo S, Norman PJ, Layrisse Z, et al. Reconstructing the population genetic history of the Caribbean. Plos Genetics. 9: e1003925. PMID 24244192 DOI: 10.1371/Journal.Pgen.1003925  0.437
2012 Brisbin A, Bryc K, Byrnes J, Zakharia F, Omberg L, Degenhardt J, Reynolds A, Ostrer H, Mezey JG, Bustamante CD. PCAdmix: principal components-based assignment of ancestry along each chromosome in individuals with admixed ancestry from two or more populations. Human Biology. 84: 343-64. PMID 23249312 DOI: 10.3378/027.084.0401  0.383
2012 Maller JB, McVean G, Byrnes J, Vukcevic D, Palin K, Su Z, Howson JM, Auton A, Myers S, Morris A, Pirinen M, Brown MA, Burton PR, Caulfield MJ, et al. Bayesian refinement of association signals for 14 loci in 3 common diseases. Nature Genetics. 44: 1294-301. PMID 23104008 DOI: 10.1038/Ng.2435  0.31
2012 Kidd JM, Gravel S, Byrnes J, Moreno-Estrada A, Musharoff S, Bryc K, Degenhardt JD, Brisbin A, Sheth V, Chen R, McLaughlin SF, Peckham HE, Omberg L, Bormann Chung CA, Stanley S, et al. Population genetic inference from personal genome data: impact of ancestry and admixture on human genomic variation. American Journal of Human Genetics. 91: 660-71. PMID 23040495 DOI: 10.1016/J.Ajhg.2012.08.025  0.528
2012 Henn BM, Botigué LR, Gravel S, Wang W, Brisbin A, Byrnes JK, Fadhlaoui-Zid K, Zalloua PA, Moreno-Estrada A, Bertranpetit J, Bustamante CD, Comas D. Genomic ancestry of North Africans supports back-to-Africa migrations. Plos Genetics. 8: e1002397. PMID 22253600 DOI: 10.1371/Journal.Pgen.1002397  0.407
2011 Dewey FE, Chen R, Cordero SP, Ormond KE, Caleshu C, Karczewski KJ, Whirl-Carrillo M, Wheeler MT, Dudley JT, Byrnes JK, Cornejo OE, Knowles JW, Woon M, Sangkuhl K, Gong L, et al. Phased whole-genome genetic risk in a family quartet using a major allele reference sequence. Plos Genetics. 7: e1002280. PMID 21935354 DOI: 10.1371/Journal.Pgen.1002280  0.424
2010 Craddock N, Hurles ME, Cardin N, Pearson RD, Plagnol V, Robson S, Vukcevic D, Barnes C, Conrad DF, Giannoulatou E, Holmes C, Marchini JL, Stirrups K, Tobin MD, ... ... Byrnes J, et al. Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls. Nature. 464: 713-20. PMID 20360734 DOI: 10.1038/Nature08979  0.398
2008 Zhang X, Byrnes JK, Gal TS, Li WH, Borevitz JO. Whole genome transcriptome polymorphisms in Arabidopsis thaliana. Genome Biology. 9: R165. PMID 19025653 DOI: 10.1186/Gb-2008-9-11-R165  0.558
2006 Lin YS, Byrnes JK, Hwang JK, Li WH. Codon-usage bias versus gene conversion in the evolution of yeast duplicate genes. Proceedings of the National Academy of Sciences of the United States of America. 103: 14412-6. PMID 16971485 DOI: 10.1073/Pnas.0606348103  0.551
2006 Byrnes JK, Morris GP, Li WH. Reorganization of adjacent gene relationships in yeast genomes by whole-genome duplication and gene deletion. Molecular Biology and Evolution. 23: 1136-43. PMID 16527865 DOI: 10.1093/Molbev/Msj121  0.597
2006 Shiu SH, Byrnes JK, Pan R, Zhang P, Li WH. Role of positive selection in the retention of duplicate genes in mammalian genomes. Proceedings of the National Academy of Sciences of the United States of America. 103: 2232-6. PMID 16461903 DOI: 10.1073/Pnas.0510388103  0.599
2005 Byrnes JK, Li WH. Patterns of gene deletion following genome duplication in yeast 2005 Ieee Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts. 25-26. DOI: 10.1109/CSBW.2005.104  0.575
Low-probability matches (unlikely to be authored by this person)
2009 Ramagopalan SV, Link J, Byrnes JK, Dyment DA, Giovannoni G, Hintzen RQ, Sundqvist E, Kockum I, Smestad C, Lie BA, Harbo HF, Padyukov L, Alfredsson L, Olsson T, Sadovnick AD, et al. HLA-DRB1 and month of birth in multiple sclerosis. Neurology. 73: 2107-11. PMID 20018638 DOI: 10.1212/Wnl.0B013E3181C679F3  0.288
2009 Ramagopalan SV, Byrnes JK, Dyment DA, Guimond C, Handunnetthi L, Disanto G, Yee IM, Ebers GC, Sadovnick AD. Parent-of-origin of HLA-DRB1*1501 and age of onset of multiple sclerosis. Journal of Human Genetics. 54: 547-9. PMID 19629136 DOI: 10.1038/Jhg.2009.69  0.285
2010 Ramagopalan SV, Byrnes JK, Orton SM, Dyment DA, Guimond C, Yee IM, Ebers GC, Sadovnick AD. Sex ratio of multiple sclerosis and clinical phenotype. European Journal of Neurology : the Official Journal of the European Federation of Neurological Societies. 17: 634-7. PMID 19968710 DOI: 10.1111/J.1468-1331.2009.02850.X  0.253
2012 Ramagopalan S, Yee I, Byrnes J, Guimond C, Ebers G, Sadovnick D. Term pregnancies and the clinical characteristics of multiple sclerosis: A population based study Journal of Neurology, Neurosurgery and Psychiatry. 83: 793-795. PMID 22626946 DOI: 10.1136/Jnnp-2012-302848  0.228
2021 Hateley S, Lopez-Izquierdo A, Jou CJ, Cho S, Schraiber JG, Song S, Maguire CT, Torres N, Riedel M, Bowles NE, Arrington CB, Kennedy BJ, Etheridge SP, Lai S, Pribble C, ... ... Byrnes J, et al. The history and geographic distribution of a KCNQ1 atrial fibrillation risk allele. Nature Communications. 12: 6442. PMID 34750360 DOI: 10.1038/s41467-021-26741-7  0.206
2021 Wang Y, Song S, Schraiber JG, Sedghifar A, Byrnes JK, Turissini DA, Hong EL, Ball CA, Noto K. Ancestry inference using reference labeled clusters of haplotypes. Bmc Bioinformatics. 22: 459. PMID 34563119 DOI: 10.1186/s12859-021-04350-x  0.198
2002 Byrnes JK. In top form. Advances in head protection raise comfort, safety, and style for workers. Occupational Health & Safety (Waco, Tex.). 71: 44-6. PMID 11933618  0.013
2002 Byrnes JK. A host of improvements. Occupational Health & Safety (Waco, Tex.). 71: 74-6. PMID 12449606  0.012
2004 Byrnes JK. Beyond the brim: the future of industrial helmet design. Occupational Health & Safety (Waco, Tex.). 73: 46-9, 99. PMID 15074137  0.01
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