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Mehmet S. Apaydin, Ph.D. - Publications

Affiliations: 
2004 Stanford University, Palo Alto, CA 
Area:
Bioinformatics
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12/19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Çetinkaya Ş, Ekren ŞN, Apaydin MS. Progress in Nuclear Vector Replacement for NMR Protein Structure-Based Assignments Rairo - Operations Research. 50: 341-349. DOI: 10.1051/Ro/2015038  0.418
2015 Akhmedov M, Çatay B, Apaydın MS. Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments. Journal of Bioinformatics and Computational Biology. 1550020. PMID 26260854 DOI: 10.1142/S0219720015500201  0.434
2012 Cavuşlar G, Çatay B, Apaydın MS. A tabu search approach for the NMR protein structure-based assignment problem. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 9: 1621-8. PMID 23221084 DOI: 10.1109/Tcbb.2012.122  0.408
2012 Erdoǧan H, Apaydin MS. Incorporating amino acid typing into Nuclear Magnetic Resonance protein structure-based assignments Journal of Proteomics and Bioinformatics. 5: 116-121. DOI: 10.4172/Jpb.1000222  0.38
2011 Apaydin MS, Çatay B, Patrick N, Donald BR. NVR-BIP: Nuclear Vector Replacement using Binary Integer Programming for NMR Structure-Based Assignments. The Computer Journal. 54: 708-716. PMID 25580019 DOI: 10.1093/comjnl/bxp120  0.357
2008 Apaydin MS, Conitzer V, Donald BR. Structure-based protein NMR assignments using native structural ensembles. Journal of Biomolecular Nmr. 40: 263-76. PMID 18365752 DOI: 10.1007/S10858-008-9230-X  0.422
2007 Chiang TH, Apaydin MS, Brutlag DL, Hsu D, Latombe JC. Using stochastic roadmap simulation to predict experimental quantities in protein folding kinetics: folding rates and phi-values. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 578-93. PMID 17683262 DOI: 10.1089/Cmb.2007.R004  0.543
2006 Chiang TH, Apaydin MS, Brutlag DL, Hsu D, Latombe JC. Predicting experimental quantities in protein folding kinetics using stochastic roadmap simulation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3909: 410-424. DOI: 10.1007/11732990_34  0.536
2004 Apaydin MS, Brutlag DL, Guestrin C, Hsu D, Latombe JC. Stochastic conformational roadmaps for computing ensemble properties of molecular motion Springer Tracts in Advanced Robotics. 7: 131-147. DOI: 10.1007/978-3-540-45058-0_9  0.471
2003 Apaydin MS, Brutlag DL, Guestrin C, Hsu D, Latombe JC, Varma C. Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 10: 257-81. PMID 12935328 DOI: 10.1089/10665270360688011  0.579
2002 Apaydin MS, Guestrin CE, Varma C, Brutlag DL, Latombe JC. Stochastic roadmap simulation for the study of ligand-protein interactions. Bioinformatics (Oxford, England). 18: S18-26. PMID 12385979  0.505
2001 Apaydin MS, Singh AP, Brutlag DL, Latombe JC. Capturing molecular energy landscapes with probabilistic conformational roadmaps Proceedings - Ieee International Conference On Robotics and Automation. 1: 932-939.  0.434
Low-probability matches (unlikely to be authored by this person)
2014 Ekren SN, Apaydin MS. Incorporating triple resonance experiment data into NVR for NMR protein structure-based assignments | NMR protein yapi tabanli atama programi nvrin üçlü rezonans deney verisini kabul edecek şekilde geliştirilmesi 2014 22nd Signal Processing and Communications Applications Conference, Siu 2014 - Proceedings. 1926-1929. DOI: 10.1109/SIU.2014.6830632  0.299
2013 Akhmedov M, Çatay B, Apaydin MS. Distinguishing the type of NOE for NMR protein structure-based assignments 2013 21st Signal Processing and Communications Applications Conference, Siu 2013. DOI: 10.1109/SIU.2013.6531349  0.291
2018 Çakmak UC, Apaydın MS, Çatay B. Traffic speed prediction with neural networks A Quarterly Journal of Operations Research. 737-743. DOI: 10.1007/978-3-319-89920-6_98  0.253
2010 Erdoǧan H, Apaydin MS. Using amino acid typing to improve the accuracy of NMR structure based assignments 2010 5th International Symposium On Health Informatics and Bioinformatics, Hibit 2010. 206-210. DOI: 10.1109/HIBIT.2010.5478879  0.155
2013 Aslanov J, Çatay B, Apaydin MS. An ant colony optimization approach for solving the nuclear magnetic resonance structure based assignment problem Gecco 2013 - Proceedings of the 2013 Genetic and Evolutionary Computation Conference Companion. 1609-1615. DOI: 10.1145/2464576.2482741  0.14
2010 Çalpur MC, Erdoǧan H, Çatay B, Donald BR, Apaydin MS. Developing a scoring function for NMR structure-based assignments using machine learning Lecture Notes in Electrical Engineering. 62: 87-90. DOI: 10.1007/978-90-481-9794-1_17  0.111
2001 Beigel R, Alon N, Apaydin MS, Fortnow L, Kasif S. An optimal procedure for gap closing in whole genome shotgun sequencing Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 22-30.  0.021
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