| Year |
Citation |
Score |
| Low-probability matches (unlikely to be authored by this person) |
| 2024 |
Moreno JA, Dudchenko O, Feigin CY, Mereby SA, Chen Z, Ramos R, Almet AA, Sen H, Brack BJ, Johnson MR, Li S, Wang W, Gaska JM, Ploss A, Weisz D, ... ... Aiden EL, et al. Emx2 underlies the development and evolution of marsupial gliding membranes. Nature. PMID 38658750 DOI: 10.1038/s41586-024-07305-3 |
0.01 |
|
| 2024 |
Zheng S, Thakkar N, Harris HL, Liu S, Zhang M, Gerstein M, Aiden EL, Rowley MJ, Noble WS, Gürsoy G, Singh R. Predicting A/B compartments from histone modifications using deep learning. Iscience. 27: 109570. PMID 38646172 DOI: 10.1016/j.isci.2024.109570 |
0.01 |
|
| 2024 |
Pujadas Liwag EM, Wei X, Acosta N, Carter LM, Yang J, Almassalha LM, Jain S, Daneshkhah A, Rao SSP, Seker-Polat F, MacQuarrie KL, Ibarra J, Agrawal V, Aiden EL, Kanemaki MT, et al. Depletion of lamins B1 and B2 promotes chromatin mobility and induces differential gene expression by a mesoscale-motion-dependent mechanism. Genome Biology. 25: 77. PMID 38519987 DOI: 10.1186/s13059-024-03212-y |
0.01 |
|
| 2024 |
Bush J, Webster C, Wegrzyn J, Simon C, Wilcox E, Khan R, Weisz D, Dudchenko O, Aiden EL, Frandsen P. Chromosome Level Genome Assembly and Annotation of a Periodical Cicada Species: Magicicada septendecula. Genome Biology and Evolution. PMID 38190231 DOI: 10.1093/gbe/evae001 |
0.01 |
|
| 2023 |
Adastra PA, Durand NC, Mitra N, Pulido SG, Mahajan R, Blackburn A, Colaric ZL, Theisen JWM, Weisz D, Dudchenko O, Gnirke A, Rao SSP, Kaur P, Aiden EL, Aiden AP. A rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing. Plos One. 18: e0294283. PMID 38032990 DOI: 10.1371/journal.pone.0294283 |
0.01 |
|
| 2023 |
Hitz B, Lee JW, Jolanki O, Kagda M, Graham K, Sud P, Gabdank I, Strattan JS, Sloan C, Dreszer T, Rowe L, Podduturi N, Malladi V, Chan E, Davidson J, ... ... Aiden E, et al. The ENCODE Uniform Analysis Pipelines. Research Square. PMID 37503119 DOI: 10.21203/rs.3.rs-3111932/v1 |
0.01 |
|
| 2023 |
Hu H, Wang P, Angessa TT, Zhang XQ, Chalmers KJ, Zhou G, Hill CB, Jia Y, Simpson C, Fuller J, Saxena A, Al Shamaileh H, Iqbal M, Chapman B, Kaur P, ... ... Aiden EL, et al. Genomic signatures of barley breeding for environmental adaptation to the new continents. Plant Biotechnology Journal. PMID 37497741 DOI: 10.1111/pbi.14077 |
0.01 |
|
| 2023 |
Braceros AK, Schertzer MD, Omer A, Trotman JB, Davis ES, Dowen JM, Phanstiel DH, Aiden EL, Calabrese JM. Proximity-dependent recruitment of Polycomb repressive complexes by the lncRNA Airn. Cell Reports. 42: 112803. PMID 37436897 DOI: 10.1016/j.celrep.2023.112803 |
0.01 |
|
| 2023 |
Pujadas EM, Wei X, Acosta N, Carter L, Yang J, Almassalha L, Daneshkhah A, Rao SSP, Agrawal V, Seker-Polat F, Aiden EL, Kanemaki MT, Backman V, Adli M. Depletion of lamins B1 and B2 alters chromatin mobility and induces differential gene expression by a mesoscale-motion dependent mechanism. Biorxiv : the Preprint Server For Biology. PMID 37425796 DOI: 10.1101/2023.06.26.546573 |
0.01 |
|
| 2023 |
Harris HL, Gu H, Olshansky M, Wang A, Farabella I, Eliaz Y, Kalluchi A, Krishna A, Jacobs M, Cauer G, Pham M, Rao SSP, Dudchenko O, Omer A, Mohajeri K, ... ... Aiden EL, et al. Chromatin alternates between A and B compartments at kilobase scale for subgenic organization. Nature Communications. 14: 3303. PMID 37280210 DOI: 10.1038/s41467-023-38429-1 |
0.01 |
|
| 2023 |
Kliver S, Houck ML, Perelman PL, Totikov A, Tomarovsky A, Dudchenko O, Omer AD, Colaric Z, Weisz D, Aiden EL, Chan S, Hastie A, Komissarov A, Ryder OA, Graphodatsky A, et al. Chromosome-length genome assembly and karyotype of the endangered black-footed ferret (Mustela nigripes). The Journal of Heredity. PMID 37249392 DOI: 10.1093/jhered/esad035 |
0.01 |
|
| 2023 |
Hitz BC, Lee JW, Jolanki O, Kagda MS, Graham K, Sud P, Gabdank I, Seth Strattan J, Sloan CA, Dreszer T, Rowe LD, Podduturi NR, Malladi VS, Chan ET, Davidson JM, ... ... Aiden E, et al. The ENCODE Uniform Analysis Pipelines. Biorxiv : the Preprint Server For Biology. PMID 37066421 DOI: 10.1101/2023.04.04.535623 |
0.01 |
|
| 2023 |
Houck ML, Koepfli KP, Hains T, Khan R, Charter SJ, Fronczek JA, Misuraca AC, Kliver S, Perelman PL, Beklemisheva V, Graphodatsky A, Luo SJ, O'Brien SJ, Lim NT, Chin JSC, ... ... Aiden EL, et al. Chromosome-length genome assemblies and cytogenomic analyses of pangolins reveal remarkable chromosome counts and plasticity. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 31: 13. PMID 37043058 DOI: 10.1007/s10577-023-09722-y |
0.01 |
|
| 2023 |
Ballard JWO, Field MA, Edwards RJ, Wilson LAB, Koungoulos LG, Rosen BD, Chernoff B, Dudchenko O, Omer A, Keilwagen J, Skvortsova K, Bogdanovic O, Chan E, Zammit R, Hayes V, ... Aiden EL, et al. The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology. Gigascience. 12. PMID 36994871 DOI: 10.1093/gigascience/giad018 |
0.01 |
|
| 2023 |
Jones BM, Rubin BER, Dudchenko O, Kingwell CJ, Traniello IM, Wang ZY, Kapheim KM, Wyman ES, Adastra PA, Liu W, Parsons LR, Jackson SR, Goodwin K, Davidson SM, McBride MJ, ... ... Aiden EL, et al. Convergent and complementary selection shaped gains and losses of eusociality in sweat bees. Nature Ecology & Evolution. PMID 36941345 DOI: 10.1038/s41559-023-02001-3 |
0.01 |
|
| 2023 |
Tolman ER, Beatty CD, Bush J, Kohli M, Moreno CM, Ware JL, Webber KS, Khan R, Maheshwari C, Weisz D, Dudchenko O, Aiden EL, Frandsen PB. A Chromosome-length Assembly of the Black Petaltail (Tanypteryx hageni) Dragonfly. Genome Biology and Evolution. PMID 36807678 DOI: 10.1093/gbe/evad024 |
0.01 |
|
| 2023 |
Hassan SU, Chua EG, Paz EA, Tay CY, Greeff JC, Palmer DG, Dudchenko O, Aiden EL, Martin GB, Kaur P. Chromosome-length genome assembly of Teladorsagia circumcincta - a globally important helminth parasite in livestock. Bmc Genomics. 24: 74. PMID 36792983 DOI: 10.1186/s12864-023-09172-0 |
0.01 |
|
| 2023 |
Ballard JWO, Field MA, Edwards RJ, Wilson LAB, Koungoulos LG, Rosen BD, Chernoff B, Dudchenko O, Omer A, Keilwagen J, Skvortsova K, Bogdanovic O, Chan E, Zammit R, Hayes V, ... Aiden EL, et al. The Australasian dingo archetype: chromosome-length genome assembly, DNA methylome, and cranial morphology. Biorxiv : the Preprint Server For Biology. PMID 36747621 DOI: 10.1101/2023.01.26.525801 |
0.01 |
|
| 2023 |
Karawita AC, Cheng Y, Chew KY, Challagulla A, Kraus R, Mueller RC, Tong MZW, Hulme KD, Bielefeldt-Ohmann H, Steele LE, Wu M, Sng J, Noye E, Bruxner TJ, Au GG, ... ... Aiden E, et al. The swan genome and transcriptome, it is not all black and white. Genome Biology. 24: 13. PMID 36683094 DOI: 10.1186/s13059-022-02838-0 |
0.01 |
|
| 2023 |
Contessoto VG, Dudchenko O, Aiden EL, Wolynes PG, Onuchic JN, Di Pierro M. Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues. Nature Communications. 14: 326. PMID 36658127 DOI: 10.1038/s41467-023-35909-2 |
0.01 |
|
| 2022 |
Bursell MG, Dikow RB, Figueiró HV, Dudchenko O, Flanagan JP, Aiden EL, Goossens B, Nathan SKSS, Johnson WE, Koepfli KP, Frandsen PB. Whole genome analysis of clouded leopard species reveals an ancient divergence and distinct demographic histories. Iscience. 25: 105647. PMID 36590460 DOI: 10.1016/j.isci.2022.105647 |
0.01 |
|
| 2022 |
Brůna T, Aryal R, Dudchenko O, Sargent DJ, Mead D, Buti M, Cavallini A, Hytönen T, Andrés J, Pham M, Weisz D, Mascagni F, Usai G, Natali L, Bassil N, ... ... Aiden EL, et al. A chromosome-length genome assembly and annotation of blackberry (Rubus argutus, cv. 'Hillquist'). G3 (Bethesda, Md.). PMID 36331334 DOI: 10.1093/g3journal/jkac289 |
0.01 |
|
| 2022 |
Mohajeri K, Yadav R, D'haene E, Boone PM, Erdin S, Gao D, Moyses-Oliveira M, Bhavsar R, Currall BB, O'Keefe K, Burt ND, Lowther C, Lucente D, Salani M, Larson M, ... ... Aiden EL, et al. Transcriptional and functional consequences of alterations to MEF2C and its topological organization in neuronal models. American Journal of Human Genetics. PMID 36283406 DOI: 10.1016/j.ajhg.2022.09.015 |
0.01 |
|
| 2022 |
Wilder AP, Dudchenko O, Curry C, Korody M, Turbek SP, Daly M, Misuraca A, Wang G, Khan R, Weisz D, Fronczek J, Aiden EL, Houck ML, Shier DM, Ryder OA, et al. A Chromosome-Length Reference Genome for the Endangered Pacific Pocket Mouse Reveals Recent Inbreeding in a Historically Large Population. Genome Biology and Evolution. 14. PMID 35894178 DOI: 10.1093/gbe/evac122 |
0.01 |
|
| 2022 |
Mohr DW, Gaughran SJ, Paschall J, Naguib A, Pang AWC, Dudchenko O, Aiden EL, Church DM, Scott AF. A Chromosome-Length Assembly of the Hawaiian Monk Seal (): A History of "Genetic Purging" and Genomic Stability. Genes. 13. PMID 35886053 DOI: 10.3390/genes13071270 |
0.01 |
|
| 2022 |
Kaushal A, Dorier J, Wang B, Mohana G, Taschner M, Cousin P, Waridel P, Iseli C, Semenova A, Restrepo S, Guex N, Aiden EL, Gambetta MC. Essential role of Cp190 in physical and regulatory boundary formation. Science Advances. 8: eabl8834. PMID 35559678 DOI: 10.1126/sciadv.abl8834 |
0.01 |
|
| 2022 |
Robinson JA, Bowie RCK, Dudchenko O, Aiden EL, Hendrickson SL, Steiner CC, Ryder OA, Mindell DP, Wall JD. Response to Bakker et al. Current Biology : Cb. 32: R358-R359. PMID 35472421 DOI: 10.1016/j.cub.2022.03.049 |
0.01 |
|
| 2022 |
Field MA, Yadav S, Dudchenko O, Esvaran M, Rosen BD, Skvortsova K, Edwards RJ, Keilwagen J, Cochran BJ, Manandhar B, Bustamante S, Rasmussen JA, Melvin RG, Chernoff B, Omer A, ... ... Aiden EL, et al. The Australian dingo is an early offshoot of modern breed dogs. Science Advances. 8: eabm5944. PMID 35452284 DOI: 10.1126/sciadv.abm5944 |
0.01 |
|
| 2022 |
Davik J, Røen D, Lysøe E, Buti M, Rossman S, Alsheikh M, Aiden EL, Dudchenko O, Sargent DJ. A chromosome-level genome sequence assembly of the red raspberry (Rubus idaeus L.). Plos One. 17: e0265096. PMID 35294470 DOI: 10.1371/journal.pone.0265096 |
0.01 |
|
| 2022 |
Tigano A, Khan R, Omer AD, Weisz D, Dudchenko O, Multani AS, Pathak S, Behringer RR, Aiden EL, Fisher H, MacManes MD. Chromosome size affects sequence divergence between species through the interplay of recombination and selection. Evolution; International Journal of Organic Evolution. 76: 782-798. PMID 35271737 DOI: 10.1111/evo.14467 |
0.01 |
|
| 2022 |
Tammer L, Hameiri O, Keydar I, Roy VR, Ashkenazy-Titelman A, Custódio N, Sason I, Shayevitch R, Rodríguez-Vaello V, Rino J, Lev Maor G, Leader Y, Khair D, Aiden EL, Elkon R, et al. Gene architecture directs splicing outcome in separate nuclear spatial regions. Molecular Cell. PMID 35182478 DOI: 10.1016/j.molcel.2022.02.001 |
0.01 |
|
| 2022 |
Sidiropoulos N, Mardin BR, Rodriguez-Gonzalez FG, Garg S, Stuetz AM, Korbel JO, Aiden EL, Weischenfeldt J. Somatic structural variant formation is guided by and influences genome architecture. Genome Research. PMID 35177558 DOI: 10.1101/gr.275790.121 |
0.01 |
|
| 2022 |
Stroehlein AJ, Korhonen PK, Lee VV, Ralph SA, Mentink-Kane M, You H, McManus DP, Tchuenté LT, Stothard JR, Kaur P, Dudchenko O, Aiden EL, Yang B, Yang H, Emery AM, et al. Chromosome-level genome of Schistosoma haematobium underpins genome-wide explorations of molecular variation. Plos Pathogens. 18: e1010288. PMID 35167626 DOI: 10.1371/journal.ppat.1010288 |
0.01 |
|
| 2021 |
Lamb S, Taylor AM, Hughes TA, McMillan BR, Larsen RT, Khan R, Weisz D, Dudchenko O, Aiden EL, Edelman NB, Frandsen PB. chromosome-length assembly of the mule deer () genome. Gigabyte (Hong Kong, China). 2021: gigabyte34. PMID 36824347 DOI: 10.46471/gigabyte.34 |
0.01 |
|
| 2021 |
Garg V, Dudchenko O, Wang J, Khan AW, Gupta S, Kaur P, Han K, Saxena RK, Kale SM, Pham M, Yu J, Chitikineni A, Zhang Z, Fan G, Lui C, ... ... Aiden EL, et al. Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research. 42: 315-329. PMID 36513421 DOI: 10.1016/j.jare.2021.10.009 |
0.01 |
|
| 2021 |
Oliveira Junior AB, Estrada CP, Aiden EL, Contessoto VG, Onuchic JN. Chromosome Modeling on Downsampled Hi-C Maps Enhances the Compartmentalization Signal. The Journal of Physical Chemistry. B. 125: 8757-8767. PMID 34319725 DOI: 10.1021/acs.jpcb.1c04174 |
0.01 |
|
| 2021 |
Robinson JA, Bowie RCK, Dudchenko O, Aiden EL, Hendrickson SL, Steiner CC, Ryder OA, Mindell DP, Wall JD. Genome-wide diversity in the California condor tracks its prehistoric abundance and decline. Current Biology : Cb. PMID 33989525 DOI: 10.1016/j.cub.2021.04.035 |
0.01 |
|
| 2021 |
Edwards RJ, Field MA, Ferguson JM, Dudchenko O, Keilwagen J, Rosen BD, Johnson GS, Rice ES, Hillier D, Hammond JM, Towarnicki SG, Omer A, Khan R, Skvortsova K, Bogdanovic O, ... ... Aiden EL, et al. Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome. Bmc Genomics. 22: 188. PMID 33726677 DOI: 10.1186/s12864-021-07493-6 |
0.01 |
|
| 2021 |
Colella JP, Tigano A, Dudchenko O, Omer AD, Khan R, Bochkov ID, Aiden EL, MacManes MD. Limited evidence for parallel evolution among desert adapted Peromyscus deer mice. The Journal of Heredity. PMID 33686424 DOI: 10.1093/jhered/esab009 |
0.01 |
|
| 2021 |
Young ND, Stroehlein AJ, Kinkar L, Wang T, Sohn WM, Chang BCH, Kaur P, Weisz D, Dudchenko O, Aiden EL, Korhonen PK, Gasser RB. High-quality reference genome for Clonorchis sinensis. Genomics. PMID 33677057 DOI: 10.1016/j.ygeno.2021.03.001 |
0.01 |
|
| 2020 |
Cremer M, Brandstetter K, Maiser A, Rao SSP, Schmid VJ, Guirao-Ortiz M, Mitra N, Mamberti S, Klein KN, Gilbert DM, Leonhardt H, Cardoso MC, Aiden EL, Harz H, Cremer T. Cohesin depleted cells rebuild functional nuclear compartments after endomitosis. Nature Communications. 11: 6146. PMID 33262376 DOI: 10.1038/s41467-020-19876-6 |
0.01 |
|
| 2020 |
Zhang X, Jeong M, Huang X, Wang XQ, Wang X, Zhou W, Shamim MS, Gore H, Himadewi P, Liu Y, Bochkov ID, Reyes J, Doty M, Huang YH, Jung H, ... ... Aiden EL, et al. Large DNA Methylation Nadirs Anchor Chromatin Loops Maintaining Hematopoietic Stem Cell Identity. Molecular Cell. 78: 506-521.e6. PMID 32386543 DOI: 10.1016/J.Molcel.2020.04.018 |
0.01 |
|
| 2020 |
Kenny NJ, McCarthy SA, Dudchenko O, James K, Betteridge E, Corton C, Dolucan J, Mead D, Oliver K, Omer AD, Pelan S, Ryan Y, Sims Y, Skelton J, Smith M, ... ... Aiden EL, et al. The gene-rich genome of the scallop Pecten maximus. Gigascience. 9. PMID 32352532 DOI: 10.1093/Gigascience/Giaa037 |
0.01 |
|
| 2020 |
Field MA, Rosen BD, Dudchenko O, Chan EKF, Minoche AE, Edwards RJ, Barton K, Lyons RJ, Tuipulotu DE, Hayes VM, D Omer A, Colaric Z, Keilwagen J, Skvortsova K, Bogdanovic O, ... ... Aiden EL, et al. Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C. Gigascience. 9. PMID 32236524 DOI: 10.1093/Gigascience/Giaa027 |
0.01 |
|
| 2019 |
Senigl F, Maman Y, Dinesh RK, Alinikula J, Seth RB, Pecnova L, Omer AD, Rao SSP, Weisz D, Buerstedde JM, Aiden EL, Casellas R, Hejnar J, Schatz DG. Topologically Associated Domains Delineate Susceptibility to Somatic Hypermutation. Cell Reports. 29: 3902-3915.e8. PMID 31851922 DOI: 10.1016/J.Celrep.2019.11.039 |
0.01 |
|
| 2019 |
Fulco CP, Nasser J, Jones TR, Munson G, Bergman DT, Subramanian V, Grossman SR, Anyoha R, Doughty BR, Patwardhan TA, Nguyen TH, Kane M, Perez EM, Durand NC, Lareau CA, ... ... Aiden EL, et al. Activity-by-contact model of enhancer-promoter regulation from thousands of CRISPR perturbations. Nature Genetics. 51: 1664-1669. PMID 31784727 DOI: 10.1038/s41588-019-0538-0 |
0.01 |
|
| 2019 |
El Khattabi L, Zhao H, Kalchschmidt J, Young N, Jung S, Van Blerkom P, Kieffer-Kwon P, Kieffer-Kwon KR, Park S, Wang X, Krebs J, Tripathi S, Sakabe N, Sobreira DR, Huang SC, ... ... Aiden EL, et al. A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers. Cell. PMID 31402173 DOI: 10.1016/J.Cell.2019.07.011 |
0.01 |
|
| 2019 |
Bertioli DJ, Jenkins J, Clevenger J, Dudchenko O, Gao D, Seijo G, Leal-Bertioli SCM, Ren L, Farmer AD, Pandey MK, Samoluk SS, Abernathy B, Agarwal G, Ballén-Taborda C, Cameron C, ... ... Aiden EL, et al. The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics. PMID 31043755 DOI: 10.1038/S41588-019-0405-Z |
0.01 |
|
| 2019 |
Lawlor N, Márquez EJ, Orchard P, Narisu N, Shamim MS, Thibodeau A, Varshney A, Kursawe R, Erdos MR, Kanke M, Gu H, Pak E, Dutra A, Russell S, Li X, ... ... Aiden EL, et al. Multiomic Profiling Identifies cis-Regulatory Networks Underlying Human Pancreatic β Cell Identity and Function. Cell Reports. 26: 788-801.e6. PMID 30650367 DOI: 10.1016/J.Celrep.2018.12.083 |
0.01 |
|
| 2018 |
Nir G, Farabella I, Pérez Estrada C, Ebeling CG, Beliveau BJ, Sasaki HM, Lee SH, Nguyen SC, McCole RB, Chattoraj S, Erceg J, AlHaj Abed J, Martins NMC, Nguyen HQ, Hannan MA, ... ... Aiden EL, et al. Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling. Plos Genetics. 14: e1007872. PMID 30586358 DOI: 10.1371/Journal.Pgen.1007872 |
0.01 |
|
| 2018 |
Matthews BJ, Dudchenko O, Kingan SB, Koren S, Antoshechkin I, Crawford JE, Glassford WJ, Herre M, Redmond SN, Rose NH, Weedall GD, Wu Y, Batra SS, Brito-Sierra CA, Buckingham SD, ... ... Aiden EL, et al. Improved reference genome of Aedes aegypti informs arbovirus vector control. Nature. PMID 30429615 DOI: 10.1038/S41586-018-0692-Z |
0.01 |
|
| 2018 |
Vian L, Pękowska A, Rao SSP, Kieffer-Kwon KR, Jung S, Baranello L, Huang SC, El Khattabi L, Dose M, Pruett N, Sanborn AL, Canela A, Maman Y, Oksanen A, Resch W, ... ... Aiden EL, et al. The Energetics and Physiological Impact of Cohesin Extrusion. Cell. 175: 292-294. PMID 30241609 DOI: 10.1016/j.cell.2018.09.002 |
0.01 |
|
| 2018 |
Gate RE, Cheng CS, Aiden AP, Siba A, Tabaka M, Lituiev D, Machol I, Gordon MG, Subramaniam M, Shamim M, Hougen KL, Wortman I, Huang SC, Durand NC, Feng T, ... ... Aiden EL, et al. Genetic determinants of co-accessible chromatin regions in activated T cells across humans. Nature Genetics. PMID 29988122 DOI: 10.1038/S41588-018-0156-2 |
0.01 |
|
| 2018 |
Vian L, Pękowska A, Rao SSP, Kieffer-Kwon KR, Jung S, Baranello L, Huang SC, El Khattabi L, Dose M, Pruett N, Sanborn AL, Canela A, Maman Y, Oksanen A, Resch W, ... ... Aiden EL, et al. The Energetics and Physiological Impact of Cohesin Extrusion. Cell. PMID 29706548 DOI: 10.1016/J.Cell.2018.03.072 |
0.01 |
|
| 2018 |
Robinson JT, Turner D, Durand NC, Thorvaldsdóttir H, Mesirov JP, Aiden EL. Juicebox.js Provides a Cloud-Based Visualization System for Hi-C Data. Cell Systems. PMID 29428417 DOI: 10.1016/J.Cels.2018.01.001 |
0.01 |
|
| 2017 |
Gebru T, Krause J, Wang Y, Chen D, Deng J, Aiden EL, Fei-Fei L. Using deep learning and Google Street View to estimate the demographic makeup of neighborhoods across the United States. Proceedings of the National Academy of Sciences of the United States of America. 114: 13108-13113. PMID 29183967 DOI: 10.1073/Pnas.1700035114 |
0.01 |
|
| 2017 |
Larsen PA, Harris RA, Liu Y, Murali SC, Campbell CR, Brown AD, Sullivan BA, Shelton J, Brown SJ, Raveendran M, Dudchenko O, Machol I, Durand NC, Shamim MS, Aiden EL, et al. Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus). Bmc Biology. 15: 110. PMID 29145861 DOI: 10.1186/S12915-017-0439-6 |
0.01 |
|
| 2017 |
Rao SSP, Huang SC, Glenn St Hilaire B, Engreitz JM, Perez EM, Kieffer-Kwon KR, Sanborn AL, Johnstone SE, Bascom GD, Bochkov ID, Huang X, Shamim MS, Shin J, Turner D, Ye Z, ... ... Aiden EL, et al. Cohesin Loss Eliminates All Loop Domains. Cell. 171: 305-320.e24. PMID 28985562 DOI: 10.1016/J.Cell.2017.09.026 |
0.01 |
|
| 2017 |
Phanstiel DH, Van Bortle K, Spacek D, Hess GT, Shamim MS, Machol I, Love MI, Aiden EL, Bassik MC, Snyder MP. Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development. Molecular Cell. PMID 28890333 DOI: 10.1016/J.Molcel.2017.08.006 |
0.01 |
|
| 2017 |
Kieffer-Kwon KR, Nimura K, Rao SSP, Xu J, Jung S, Pekowska A, Dose M, Stevens E, Mathe E, Dong P, Huang SC, Ricci MA, Baranello L, Zheng Y, Ardori FT, ... ... Aiden EL, et al. Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation. Molecular Cell. PMID 28803781 DOI: 10.1016/J.Molcel.2017.07.013 |
0.01 |
|
| 2017 |
Eagen KP, Aiden EL, Kornberg RD. Polycomb-mediated chromatin loops revealed by a subkilobase-resolution chromatin interaction map. Proceedings of the National Academy of Sciences of the United States of America. PMID 28765367 DOI: 10.1073/pnas.1701291114 |
0.01 |
|
| 2017 |
Canela A, Maman Y, Jung S, Wong N, Callen E, Day A, Kieffer-Kwon KR, Pekowska A, Zhang H, Rao SSP, Huang SC, Mckinnon PJ, Aplan PD, Pommier Y, Aiden EL, et al. Genome Organization Drives Chromosome Fragility. Cell. PMID 28735753 DOI: 10.1016/J.Cell.2017.06.034 |
0.01 |
|
| 2017 |
Dudchenko O, Batra SS, Omer AD, Nyquist SK, Hoeger M, Durand NC, Shamim MS, Machol I, Lander ES, Aiden AP, Aiden EL. De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science (New York, N.Y.). PMID 28336562 DOI: 10.1126/science.aal3327 |
0.01 |
|
| 2016 |
Di Pierro M, Zhang B, Aiden EL, Wolynes PG, Onuchic JN. Transferable model for chromosome architecture. Proceedings of the National Academy of Sciences of the United States of America. PMID 27688758 DOI: 10.1073/Pnas.1613607113 |
0.01 |
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| 2016 |
Durand NC, Robinson JT, Shamim MS, Machol I, Mesirov JP, Lander ES, Aiden EL. Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom. Cell Systems. 3: 99-101. PMID 27467250 DOI: 10.1016/J.Cels.2015.07.012 |
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| 2016 |
Durand NC, Shamim MS, Machol I, Rao SS, Huntley MH, Lander ES, Aiden EL. Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments. Cell Systems. 3: 95-8. PMID 27467249 DOI: 10.1016/j.cels.2016.07.002 |
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| 2016 |
Darrow EM, Huntley MH, Dudchenko O, Stamenova EK, Durand NC, Sun Z, Huang SC, Sanborn AL, Machol I, Shamim M, Seberg AP, Lander ES, Chadwick BP, Aiden EL. Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture. Proceedings of the National Academy of Sciences of the United States of America. PMID 27432957 DOI: 10.1073/pnas.1609643113 |
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| 2015 |
Sanborn AL, Rao SS, Huang SC, Durand NC, Huntley MH, Jewett AI, Bochkov ID, Chinnappan D, Cutkosky A, Li J, Geeting KP, Gnirke A, Melnikov A, McKenna D, Stamenova EK, ... ... Aiden EL, et al. Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes. Proceedings of the National Academy of Sciences of the United States of America. PMID 26499245 DOI: 10.1073/Pnas.1518552112 |
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| 2015 |
Aiden EL, Casellas R. Somatic Rearrangement in B Cells: It's (Mostly) Nuclear Physics. Cell. 162: 708-11. PMID 26276627 DOI: 10.1016/j.cell.2015.07.034 |
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| 2015 |
Rao SSP, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL. A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping Cell. 162: 687-688. DOI: 10.1016/j.cell.2015.07.024 |
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| 2014 |
Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 159: 1665-80. PMID 25497547 DOI: 10.1016/j.cell.2014.11.021 |
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| 2012 |
Aiden EL. Zoom (Science (2011) (1222)) Science. 335: 796. |
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| 2011 |
Michel JB, Shen YK, Aiden AP, Veres A, Gray MK, Pickett JP, Hoiberg D, Clancy D, Norvig P, Orwant J, Pinker S, Nowak MA, Aiden EL. Quantitative analysis of culture using millions of digitized books. Science (New York, N.Y.). 331: 176-82. PMID 21163965 DOI: 10.1126/Science.1199644 |
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| 2011 |
Aiden EL, Pickett JP, Michel JB. Response Science. 332: 36-37. |
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