Hilal Kazan, Ph.D. - Publications

Affiliations: 
2012 Computer Science University of Toronto, Toronto, ON, Canada 
Area:
Computational biology

11 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Berkowitz ND, Silverman IM, Childress DM, Kazan H, Wang LS, Gregory BD. A comprehensive database of high-throughput sequencing-based RNA secondary structure probing data (Structure Surfer). Bmc Bioinformatics. 17: 215. PMID 27188311 DOI: 10.1186/s12859-016-1071-0  1
2016 de Bruin RG, Shiue L, Prins J, de Boer HC, Singh A, Fagg WS, van Gils JM, Duijs JM, Katzman S, Kraaijeveld AO, Böhringer S, Leung WY, Kielbasa SM, Donahue JP, van der Zande PH, ... ... Kazan H, et al. Quaking promotes monocyte differentiation into pro-atherogenic macrophages by controlling pre-mRNA splicing and gene expression. Nature Communications. 7: 10846. PMID 27029405 DOI: 10.1038/ncomms10846  1
2015 Colak R, Kim T, Kazan H, Oh Y, Cruz M, Valladares-Salgado A, Peralta J, Escobedo J, Parra EJ, Kim PM, Goldenberg A. JBASE: Joint Bayesian Analysis of Subphenotypes and Epistasis. Bioinformatics (Oxford, England). PMID 26411870 DOI: 10.1093/bioinformatics/btv504  1
2014 Yilancioglu K, Weinstein ZB, Meydan C, Akhmetov A, Toprak I, Durmaz A, Iossifov I, Kazan H, Roth FP, Cokol M. Target-independent prediction of drug synergies using only drug lipophilicity. Journal of Chemical Information and Modeling. 54: 2286-93. PMID 25026390 DOI: 10.1021/ci500276x  1
2014 Li X, Kazan H, Lipshitz HD, Morris QD. Finding the target sites of RNA-binding proteins. Wiley Interdisciplinary Reviews. Rna. 5: 111-30. PMID 24217996 DOI: 10.1002/wrna.1201  1
2013 Ray D, Kazan H, Cook KB, Weirauch MT, Najafabadi HS, Li X, Gueroussov S, Albu M, Zheng H, Yang A, Na H, Irimia M, Matzat LH, Dale RK, Smith SA, et al. A compendium of RNA-binding motifs for decoding gene regulation. Nature. 499: 172-7. PMID 23846655 DOI: 10.1038/nature12311  1
2013 Kazan H, Morris Q. RBPmotif: a web server for the discovery of sequence and structure preferences of RNA-binding proteins. Nucleic Acids Research. 41: W180-6. PMID 23754853 DOI: 10.1093/nar/gkt463  1
2012 Wilbert ML, Huelga SC, Kapeli K, Stark TJ, Liang TY, Chen SX, Yan BY, Nathanson JL, Hutt KR, Lovci MT, Kazan H, Vu AQ, Massirer KB, Morris Q, Hoon S, et al. LIN28 binds messenger RNAs at GGAGA motifs and regulates splicing factor abundance. Molecular Cell. 48: 195-206. PMID 22959275 DOI: 10.1016/j.molcel.2012.08.004  1
2011 Cook KB, Kazan H, Zuberi K, Morris Q, Hughes TR. RBPDB: a database of RNA-binding specificities. Nucleic Acids Research. 39: D301-8. PMID 21036867 DOI: 10.1093/nar/gkq1069  1
2010 Kazan H, Ray D, Chan ET, Hughes TR, Morris Q. RNAcontext: a new method for learning the sequence and structure binding preferences of RNA-binding proteins. Plos Computational Biology. 6: e1000832. PMID 20617199 DOI: 10.1371/journal.pcbi.1000832  1
2009 Ray D, Kazan H, Chan ET, Peña Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nature Biotechnology. 27: 667-70. PMID 19561594 DOI: 10.1038/nbt.1550  1
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