Tolga Can, Ph.D. - Publications

Affiliations: 
2004 University of California, Santa Barbara, Santa Barbara, CA, United States 

24/84 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Begik O, Oyken M, Cinkilli Alican T, Can T, Erson-Bensan AE. Alternative Polyadenylation Patterns for Novel Gene Discovery and Classification in Cancer. Neoplasia (New York, N.Y.). 19: 574-582. PMID 28624626 DOI: 10.1016/J.Neo.2017.04.008  0.317
2016 Tuncay EG, Can T. SUMONA: A supervised method for optimizing network alignment. Computational Biology and Chemistry. PMID 27177812 DOI: 10.1016/J.Compbiolchem.2016.03.003  0.34
2015 Budak G, Eren Ozsoy O, Aydin Son Y, Can T, Tuncbag N. Reconstruction of the temporal signaling network in Salmonella-infected human cells. Frontiers in Microbiology. 6: 730. PMID 26257716 DOI: 10.7490/F1000Research.1110034.1  0.301
2015 Krallinger M, Rabal O, Leitner F, Vazquez M, Salgado D, Lu Z, Leaman R, Lu Y, Ji D, Lowe DM, Sayle RA, Batista-Navarro RT, Rak R, Huber T, Rocktäschel T, ... ... Can T, et al. The CHEMDNER corpus of chemicals and drugs and its annotation principles. Journal of Cheminformatics. 7: S2. PMID 25810773 DOI: 10.1186/1758-2946-7-S1-S2  0.327
2014 Eser E, Can T, Ferhatosmanoğlu H. Div-BLAST: diversification of sequence search results. Plos One. 9: e115445. PMID 25531115 DOI: 10.1371/Journal.Pone.0115445  0.347
2014 Sahin ME, Can T, Son CD. GPCRsort-responding to the next generation sequencing data challenge: prediction of G protein-coupled receptor classes using only structural region lengths. Omics : a Journal of Integrative Biology. 18: 636-44. PMID 25133496 DOI: 10.1089/Omi.2014.0073  0.353
2014 Can T. Introduction to bioinformatics. Methods in Molecular Biology (Clifton, N.J.). 1107: 51-71. PMID 24272431 DOI: 10.1007/978-1-62703-748-8_4  0.41
2013 Ozsoy OE, Can T. A divide and conquer approach for construction of large-scale signaling networks from PPI and RNAi data using linear programming. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 10: 869-83. PMID 24334382 DOI: 10.1109/Tcbb.2013.80  0.311
2012 Hashemikhabir S, Ayaz ES, Kavurucu Y, Can T, Kahveci T. Large-scale signaling network reconstruction. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 9: 1696-708. PMID 23221085 DOI: 10.1109/Tcbb.2012.128  0.315
2009 Camoğlu O, Can T, Singh AK. Accurate and scalable techniques for the complex/pathway membership problem in protein networks. Advances in Bioinformatics. 787128. PMID 20182643 DOI: 10.1155/2009/787128  0.408
2009 Macropol K, Can T, Singh AK. RRW: repeated random walks on genome-scale protein networks for local cluster discovery. Bmc Bioinformatics. 10: 283. PMID 19740439 DOI: 10.1186/1471-2105-10-283  0.35
2009 Bayir MA, Guney TD, Can T. Integration of topological measures for eliminating non-specific interactions in protein interaction networks Discrete Applied Mathematics. 157: 2416-2424. DOI: 10.1016/J.Dam.2008.06.034  0.384
2008 Turanalp ME, Can T. Discovering functional interaction patterns in protein-protein interaction networks. Bmc Bioinformatics. 9: 276. PMID 18547430 DOI: 10.1186/1471-2105-9-276  0.34
2006 Can T, Chen CI, Wang YF. Efficient molecular surface generation using level-set methods. Journal of Molecular Graphics & Modelling. 25: 442-54. PMID 16621636 DOI: 10.1016/J.Jmgm.2006.02.012  0.604
2006 Camoglu O, Can T, Singh AK. Integrating multi-attribute similarity networks for robust representation of the protein space. Bioinformatics (Oxford, England). 22: 1585-92. PMID 16595556 DOI: 10.1093/Bioinformatics/Btl130  0.406
2005 Camoğlu O, Can T, Singh AK, Wang YF. Decision tree based information integration for automated protein classification. Journal of Bioinformatics and Computational Biology. 3: 717-42. PMID 16108091 DOI: 10.1142/S0219720005001259  0.537
2005 Can T, Orhan C, Singh AK. Analysis of protein-protein interaction networks using random walks Proceedings of the Acm Sigkdd International Conference On Knowledge Discovery and Data Mining. 61-68. DOI: 10.1145/1134030.1134042  0.312
2004 Can T, Camoğlu O, Singh AK, Wang YF. Automated protein classification using consensus decision. Proceedings / Ieee Computational Systems Bioinformatics Conference, Csb. Ieee Computational Systems Bioinformatics Conference. 224-35. PMID 16448016  0.501
2004 Can T, Wang YF. Protein structure alignment and fast similarity search using local shape signatures. Journal of Bioinformatics and Computational Biology. 2: 215-39. PMID 15272439 DOI: 10.1142/S0219720004000533  0.558
2004 Bhattacharya A, Can T, Kahveci T, Singh AK, Wang YF. Progress: simultaneous searching of protein databases by sequence and structure. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 264-75. PMID 14992509  0.524
2003 Can T, Wang YF. CTSS: a robust and efficient method for protein structure alignment based on local geometrical and biological features. Proceedings / Ieee Computer Society Bioinformatics Conference. Ieee Computer Society Bioinformatics Conference. 2: 169-79. PMID 16452791 DOI: 10.1109/CSB.2003.1227316  0.529
2003 Can T, Wang Y, Wang YF, Su J. FPV: fast protein visualization using Java 3D. Bioinformatics (Oxford, England). 19: 913-22. PMID 12761052 DOI: 10.1093/Bioinformatics/Btg104  0.525
2003 Wang Y, Can T, Wang YF, Su J. Personalized annotation and information sharing in protein science with information-slips Proceedings of the Iasted International Conference On Information and Knowledge Sharing. 299-304.  0.463
2003 Can T, Wang Y, Wang YF, Su J. FPV: Fast protein visualization using Java 3D™ Proceedings of the Acm Symposium On Applied Computing. 88-95.  0.483
Low-probability matches (unlikely to be authored by this person)
2018 Begik O, Ercan M, Cingoz H, Can T, Oyken M, Erson-Bensan AE. Abstract 2360: Deregulated APA and cancer specific APA isoforms Cancer Research. 78: 2360-2360. DOI: 10.1158/1538-7445.Am2018-2360  0.297
2011 Kocabaş F, Can T, Baykal N. Metadata management and semantics in microarray repositories. Balkan Journal of Medical Genetics : Bjmg. 14: 49-64. PMID 24052712 DOI: 10.2478/V10034-011-0047-7  0.294
2017 Sonmez AB, Can T. Comparison of tissue/disease specific integrated networks using directed graphlet signatures. Bmc Bioinformatics. 18: 135. PMID 28361704 DOI: 10.1186/S12859-017-1525-Z  0.292
2009 Yaveroǧlu ON, Can T. Predicting protein-protein interactions from protein sequences using phylogenetic profiles World Academy of Science, Engineering and Technology. 56: 241-247.  0.29
2016 Erson-Bensan AE, Can T. Alternative Polyadenylation: Another foe in cancer. Molecular Cancer Research : McR. PMID 27075335 DOI: 10.1158/1541-7786.Mcr-15-0489  0.286
2017 Ozturk AR, Can T. A multiplex primer design algorithm for target amplification of continuous genomic regions. Bmc Bioinformatics. 18: 306. PMID 28629316 DOI: 10.1186/S12859-017-1716-7  0.283
2015 Akman HB, Oyken M, Tuncer T, Can T, Erson-Bensan AE. 3'UTR shortening and EGF signaling: implications for breast cancer. Human Molecular Genetics. 24: 6910-20. PMID 26395459 DOI: 10.1093/Hmg/Ddv391  0.281
2014 Ersahin T, Carkacioglu L, Can T, Konu O, Atalay V, Cetin-Atalay R. Identification of novel reference genes based on MeSH categories. Plos One. 9: e93341. PMID 24682035 DOI: 10.1371/Journal.Pone.0093341  0.277
2017 Erson-Bensan AE, Akman BH, Oyken M, Agus HH, Yavuz E, Erdem M, Can T. Abstract 3374: APA isoform diversity in triple negative breast cancers Cancer Research. 77: 3374-3374. DOI: 10.1158/1538-7445.Am2017-3374  0.272
2011 Akkoyun E, Can T. Parallelization of the functional flow algorithm for prediction of protein function using protein-protein interaction networks Proceedings of the 2011 International Conference On High Performance Computing and Simulation, Hpcs 2011. 56-62. DOI: 10.1109/HPCSim.2011.5999807  0.268
2010 Pamuk B, Can T. Coevolution based prediction of protein-protein interactions with reduced training data 2010 5th International Symposium On Health Informatics and Bioinformatics, Hibit 2010. 187-193. DOI: 10.1109/HIBIT.2010.5478884  0.267
2019 Otlu B, Can T. JOA: Joint Overlap Analysis of multiple genomic interval sets. Bmc Bioinformatics. 20: 121. PMID 30849961 DOI: 10.1186/S12859-019-2698-4  0.259
2012 Akman BH, Can T, Erson-Bensan AE. Estrogen-induced upregulation and 3'-UTR shortening of CDC6. Nucleic Acids Research. 40: 10679-88. PMID 22977174 DOI: 10.1093/Nar/Gks855  0.248
2015 Rifaioǧlu AS, Doǧan T, Can T. Unsupervised identification of redundant domain entries in InterPro database using clustering techniques Bcb 2015 - 6th Acm Conference On Bioinformatics, Computational Biology, and Health Informatics. 505-506. DOI: 10.1145/2808719.2811430  0.234
2011 Hashemikhabir S, Can T. Parallel SPICi Proceedings of the 6th International Symposium On Health Informatics and Bioinformatics, Hibit 2011. 86-90. DOI: 10.1109/HIBIT.2011.6450814  0.209
2011 Sualp M, Can T. Using network context as a filter for miRNA target prediction Biosystems. 105: 201-209. PMID 21524683 DOI: 10.1016/J.Biosystems.2011.04.002  0.208
2011 Arslan H, Ilguner Y, Can T. ProSVM and ProK-means: Novel methods for promoter prediction Proceedings of the 6th International Symposium On Health Informatics and Bioinformatics, Hibit 2011. 59-67. DOI: 10.1109/HIBIT.2011.6450810  0.199
2021 Circir A, Koksal Bicakci G, Savas B, Doken DN, Henden ŞO, Can T, Karaca E, Erson-Bensan AE. A C-term truncated EIF2Bγ protein encoded by an intronically polyadenylated isoform introduces unfavorable EIF2Bγ-EIF2γ interactions. Proteins. PMID 34796993 DOI: 10.1002/prot.26284  0.198
2011 Can T, Onur Karali A, Aytaç T. Detection and tracking of platforms above sea-level in infrared and visual band videos using Bag-of-Features technique with scale invariant feature transform | Suüstü platformlarinin kizilötesi ve görünür bant videolarinda ölçek deǧişimsiz öznitelik dönüşümüile grup oznitelikleri tekniǧi kullanilarak tespiti ve i̇zlenmesi 2011 Ieee 19th Signal Processing and Communications Applications Conference, Siu 2011. 134-137. DOI: 10.1109/SIU.2011.5929606  0.187
2021 Ayaz G, Turan G, Olgun ÇE, Kars G, Karakaya B, Yavuz K, Demiralay ÖD, Can T, Muyan M, Yaşar P. A prelude to the proximity interaction mapping of CXXC5. Scientific Reports. 11: 17587. PMID 34475492 DOI: 10.1038/s41598-021-97060-6  0.186
2021 Oguztuzun C, Yasar P, Yavuz K, Muyan M, Can T. MotifGenie: A Python Application for Searching Transcription Factor Binding Sequences Using ChIP-Seq Datasets. Bioinformatics (Oxford, England). PMID 33999190 DOI: 10.1093/bioinformatics/btab379  0.185
2011 Yaman AG, Can T. The effect of representative training dataset selection on the classification performance of the promoter sequences Proceedings of the 6th International Symposium On Health Informatics and Bioinformatics, Hibit 2011. 55-58. DOI: 10.1109/HIBIT.2011.6450809  0.181
2007 Can T, Duygulu P. Searching for repeated video sequences Proceedings of the Acm International Multimedia Conference and Exhibition. 207-216. DOI: 10.1145/1290082.1290112  0.174
2010 Carkacioğlu L, Atalay RC, Konu O, Atalay V, Can T. Bi-k-bi clustering: mining large scale gene expression data using two-level biclustering. International Journal of Data Mining and Bioinformatics. 4: 701-21. PMID 21355502 DOI: 10.1504/IJDMB.2010.037548  0.173
2011 Can T, Karali AO, Aytaç T. Detection and tracking of sea-surface targets in infrared and visual band videos using the bag-of-features technique with scale-invariant feature transform. Applied Optics. 50: 6302-12. PMID 22108891 DOI: 10.1364/AO.50.006302  0.172
2009 Engin M, Can T. Text classification in the Turkish marketing domain for context sensitive ad distribution 2009 24th International Symposium On Computer and Information Sciences, Iscis 2009. 105-110. DOI: 10.1109/ISCIS.2009.5291861  0.167
2022 Tekin S, Çan T. Slide type landslide susceptibility assessment of the Büyük Menderes watershed using artificial neural network method. Environmental Science and Pollution Research International. PMID 35178630 DOI: 10.1007/s11356-022-19248-1  0.156
2011 Ayaz ES, Can T. Constructing signaling pathways from RNAI data using genetic algorithms Proceedings of the 6th International Symposium On Health Informatics and Bioinformatics, Hibit 2011. 95-98. DOI: 10.1109/HIBIT.2011.6450816  0.141
2023 Dioken DN, Ozgul I, Koksal Bicakci G, Gol K, Can T, Erson-Bensan AE. Differential expression of mRNA 3'-end isoforms in cervical and ovarian cancers. Heliyon. 9: e20035. PMID 37810050 DOI: 10.1016/j.heliyon.2023.e20035  0.129
2021 Erdem M, Ozgul İ, Dioken DN, Gurcuoglu I, Guntekin Ergun S, Cetin-Atalay R, Can T, Erson-Bensan AE. Identification of an mRNA isoform switch for HNRNPA1 in breast cancers. Scientific Reports. 11: 24444. PMID 34961772 DOI: 10.1038/s41598-021-04007-y  0.123
2021 Yaşar P, Kars G, Yavuz K, Ayaz G, Oğuztüzün Ç, Bilgen E, Suvacı Z, Çetinkol ÖP, Can T, Muyan M. A CpG island promoter drives the CXXC5 gene expression. Scientific Reports. 11: 15655. PMID 34341443 DOI: 10.1038/s41598-021-95165-6  0.123
2005 Duman TY, Can T, Ulusay R, Keçer M, Emre O, Ateş S, Gedik I. A geohazard reconnaissance study based on geoscientific information for development needs of the western region of Istanbul (Turkey) Environmental Geology. 48: 871-888. DOI: 10.1007/s00254-005-0026-y  0.117
2005 Can T, Nefeslioglu HA, Gokceoglu C, Sonmez H, Duman TY. Susceptibility assessments of shallow earthflows triggered by heavy rainfall at three catchments by logistic regression analyses Geomorphology. 72: 250-271. DOI: 10.1016/j.geomorph.2005.05.011  0.102
2019 Cetin E, Can T, Unal CS, Keskin A, Kubat E. OPCAB surgery with an alternative retraction method: a single-centre experience. Cardiovascular Journal of Africa. 30: 1-5. PMID 31361297 DOI: 10.5830/CVJA-2019-038  0.098
2011 Peker AG, Can T. A design goal and design pattern based approach for development of game engines for mobile platforms Proceedings of Cgames'2011 Usa - 16th International Conference On Computer Games: Ai, Animation, Mobile, Interactive Multimedia, Educational and Serious Games. 114-120. DOI: 10.1109/CGAMES.2011.6000325  0.093
2008 Demirci T, Kalaycioǧlu A, Salor O, Pakhuylu S, Inan T, Küçük D, Güder M, Can T, Akkaya Y, Bilgen S, Çadirci I, Ermiş M. National power quality monitoring network and assessment center for the Turkish electricity transmission system: Recent developments | Türkiye elektrik i̇letim sistemi için yurt çapinda güç kalitesi i̇zleme aǧi ve veri deǧerlendirme merkezi: Güncel gelişmeler 2008 Ieee 16th Signal Processing, Communication and Applications Conference, Siu. DOI: 10.1109/SIU.2008.4632580  0.091
2006 Duman TY, Can T, Gokceoglu C, Nefeslioglu HA, Sonmez H. Application of logistic regression for landslide susceptibility zoning of Cekmece Area, Istanbul, Turkey Environmental Geology. 51: 241-256. DOI: 10.1007/s00254-006-0322-1  0.09
2016 Sesetyan K, Demircioglu MB, Duman TY, Çan T, Tekin S, Azak TE, Fercan ÖZ. A probabilistic seismic hazard assessment for the Turkish territory—part I: the area source model Bulletin of Earthquake Engineering. 1-31. DOI: 10.1007/s10518-016-0005-6  0.079
2019 Kaplan M, Karaagac A, Yesilkaya MI, Can T, Pocan YK, Aydogan H. A New Arterial Cannulation Technique: Arterial Cannulation through Aortic Anastomosis ("Kaplan" Technique). The Heart Surgery Forum. 22: E008-E010. PMID 30802189 DOI: 10.1532/hsf.2273  0.077
2022 Assidicky R, Tokat UM, Tarman IO, Saatci O, Ersan PG, Raza U, Ogul H, Riazalhosseini Y, Can T, Sahin O. Targeting HIF1-alpha/miR-326/ITGA5 axis potentiates chemotherapy response in triple-negative breast cancer. Breast Cancer Research and Treatment. PMID 35338412 DOI: 10.1007/s10549-022-06569-5  0.071
2009 Garagon M, Çan T. Predicting the strength anisotropy in uniaxial compression of some laminated sandstones using multivariate regression analysis Materials and Structures. 43: 509-517. DOI: 10.1617/s11527-009-9507-x  0.067
2022 Doenst T, Schneider U, Can T, Caldonazo T, Diab M, Siemeni T, Färber G, Kirov H. Cardiac Surgery 2021 Reviewed. The Thoracic and Cardiovascular Surgeon. PMID 35537447 DOI: 10.1055/s-0042-1744264  0.067
2022 Can T, Kirov H, Caldonazo T, Mukharyamov M, Färber G, Doenst T. Surgical mitral valve repair technique considerations based on the available evidence. Turk Gogus Kalp Damar Cerrahisi Dergisi. 30: 302-316. PMID 36168574 DOI: 10.5606/tgkdc.dergisi.2022.23340  0.067
2008 Bayer AO, Sevinç AM, Can T. Human skeletal and muscle deformation animation using motion capture data 16th International Conference in Central Europe On Computer Graphics, Visualization and Computer Vision, Wscg'2008 - in Co-Operation With Eurographics, Full Papers. 167-173.  0.063
2015 Can T, Siʇirci IO, Abul O, Demirci MF. Informatics olympiads in Turkey: Team selection and training Olympiads in Informatics. 9: 225-232. DOI: 10.15388/ioi.2015.18  0.061
2012 Hashemikhabir S, Ersoy G, Oguz G, Yaldiz B, Tuncel Y, Budak G, Karaaslan S, Son YA, Can T. M4B: A novel method for designing and ordering of the genetic devices 2012 7th International Symposium On Health Informatics and Bioinformatics, Hibit 2012. 123-127. DOI: 10.1109/HIBIT.2012.6209054  0.061
2005 Gokceoglu C, Sonmez H, Nefeslioglu HA, Duman TY, Can T. The 17 March 2005 Kuzulu landslide (Sivas, Turkey) and landslide-susceptibility map of its near vicinity Engineering Geology. 81: 65-83. DOI: 10.1016/j.enggeo.2005.07.011  0.055
2015 Kaplan M, Temur B, Can T, Abay G, Olsun A, Aydogan H. Open Distal Anastomosis Technique for Ascending Aortic Aneurysm Repair without Cerebral Perfusion. The Heart Surgery Forum. 18: E124-8. PMID 26334846  0.045
2009 Vural FY, Yazici A, Toroslu H, Can T, Şenkul P, Saçan A. 2009 24th International Symposium on Computer and Information Sciences, ISCIS 2009: Preface 2009 24th International Symposium On Computer and Information Sciences, Iscis 2009. DOI: 10.1109/ISCIS.2009.5291932  0.039
2018 Kaplan M, Karaagac A, Can T, Yilmaz S, Yesilkaya MI, Olsun A, Aydogan H. Open Heart Surgery at Patient's Own Temperature Without Active Cooling. The Heart Surgery Forum. 21: E132-E138. PMID 29893667  0.038
2018 Tekin S, Çan T. Effects of Landslide Sampling Strategies on the Prediction Skill of Landslide Susceptibility Modelings Journal of the Indian Society of Remote Sensing. 46: 1273-1283. DOI: 10.1007/s12524-018-0800-4  0.035
2016 Temur B, Can T, Karaagac A, Ugur M, Kaplan M, Aydogan H, Olsun A, Eren M. Stent Embolism after Coronary Angiography: Case Report. The Heart Surgery Forum. 19: E110-1. PMID 27355143  0.03
2007 Can T, Duygulu P. Detection and tracking of TV commercials | Reklamlarin beli̇rlenmesi̇ ve taki̇bi̇ 2007 Ieee 15th Signal Processing and Communications Applications, Siu. DOI: 10.1109/SIU.2007.4298593  0.025
2018 Karaağaç A, Olsun A, Can T, Yeşilkaya Mİ, Kaplan M. An aortic valve papillary fibroelastoma: A case report. Turk Gogus Kalp Damar Cerrahisi Dergisi. 26: 146-149. PMID 32082724 DOI: 10.5606/tgkdc.dergisi.2018.14735  0.021
2005 Duman TY, Can T, Gokceoglu C, Nefeslioglu HA. Landslide susceptibility mapping of Cekmece area (Istanbul, Turkey) by conditional probability Hydrology and Earth System Sciences Discussions. 2: 155-208. DOI: 10.5194/hessd-2-155-2005  0.018
2017 Demircioğlu MB, Şeşetyan K, Duman TY, Çan T, Tekin S, Ergintav S. A probabilistic seismic hazard assessment for the Turkish territory: part II—fault source and background seismicity model Bulletin of Earthquake Engineering. 16: 3399-3438. DOI: 10.1007/s10518-017-0130-x  0.016
2017 Kaplan M, Can T, Karaagac A, Acarel M, Olsun A, Yesilkaya MI, Aydogan H. Open Cardiac Surgery without Blood and Blood Products Transplantation. The Heart Surgery Forum. 20: E239-E246. PMID 29272221  0.012
2012 Son YA, Can T. 2012 7th International Symposium on Health Informatics and Bioinformatics, HIBIT 2012: Preface 2012 7th International Symposium On Health Informatics and Bioinformatics, Hibit 2012. DOI: 10.1109/HIBIT.2012.6209030  0.01
2006 Aksoy S, Duygulu P, Akçay G, Ataer E, Baştan M, Can T, Cavuş O, Doǧgrusöz E, Gökalp D, Akaydin A, Akoǧlu L, Angin P, Cinbiş G, Gür T, Ünlü M. Bilkent university at TRECVID 2006 2006 Trec Video Retrieval Evaluation Notebook Papers 0.01
2005 Duman TY, Çan T, Emre Ö, Keçer M, Doğan A, Ateş Ş, Durmaz S. Landslide inventory of northwestern Anatolia, Turkey Engineering Geology. 77: 99-114. DOI: 10.1016/j.enggeo.2004.08.005  0.01
Hide low-probability matches.