Erdal Toprak, Ph.D. - Publications

Affiliations: 
2007 University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
General Biophysics

16/72 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Okumus B, Landgraf D, Lai GC, Bakhsi S, Arias-Castro JC, Yildiz S, Huh D, Fernandez-Lopez R, Peterson CN, Toprak E, El Karoui M, Paulsson J. Mechanical slowing-down of cytoplasmic diffusion allows in vivo counting of proteins in individual cells. Nature Communications. 7: 11641. PMID 27189321 DOI: 10.1038/Ncomms11641  0.317
2016 Abdizadeh H, Acar O, Guclu TF, Tamer YT, Batur TA, Toprak E, Atilgan AR, Atilgan C. Computational Assessment of Trimethoprim Resistance in Dihydrofolate Reductase Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.323  0.3
2010 Toprak E, Kural C, Selvin PR. Super-accuracy and super-resolution getting around the diffraction limit. Methods in Enzymology. 475: 1-26. PMID 20627151 DOI: 10.1016/S0076-6879(10)75001-1  0.702
2010 Reifenberger JG, Toprak E, Kim H, Safer D, Sweeney H, Selvin PR. Reply to Sun et al.: Myosin VI movement: Wiggly or straight? Proceedings of the National Academy of Sciences of the United States of America. 107. DOI: 10.1073/Pnas.1003092107  0.705
2009 Reifenberger JG, Toprak E, Kim H, Safer D, Sweeney HL, Selvin PR. Myosin VI undergoes a 180 degrees power stroke implying an uncoupling of the front lever arm. Proceedings of the National Academy of Sciences of the United States of America. 106: 18255-60. PMID 19828438 DOI: 10.1073/Pnas.0900005106  0.684
2009 Toprak E, Yildiz A, Hoffman MT, Rosenfeld SS, Selvin PR. Why kinesin is so processive. Proceedings of the National Academy of Sciences of the United States of America. 106: 12717-22. PMID 19617538 DOI: 10.1073/Pnas.0808396106  0.745
2007 Selvin PR, Lougheed T, Tonks Hoffman M, Park H, Balci H, Blehm BH, Toprak E. Fluorescence Imaging with One-Nanometer Accuracy (FIONA). Csh Protocols. 2007: pdb.top27. PMID 21356960 DOI: 10.1101/Pdb.Top27  0.75
2007 Selvin PR, Lougheed T, Tonks Hoffman M, Park H, Balci H, Blehm BH, Toprak E. Fluorescence Imaging with One-Nanometer Accuracy (FIONA) of Cy3-DNA under Deoxygenation Conditions. Csh Protocols. 2007: pdb.prot4868. PMID 21356956 DOI: 10.1101/Pdb.Prot4868  0.73
2007 Selvin PR, Lougheed T, Tonks Hoffman M, Park H, Balci H, Blehm BH, Toprak E. Constructing Sample Chambers for Fluorescence Imaging with One-Nanometer Accuracy (FIONA). Csh Protocols. 2007: pdb.prot4867. PMID 21356955 DOI: 10.1101/Pdb.Prot4867  0.749
2007 Selvin PR, Lougheed T, Tonks Hoffman M, Park H, Balci H, Blehm BH, Toprak E. Data Analysis Methods for Fluorescence Imaging with One-Nanometer Accuracy (FIONA). Csh Protocols. 2007: pdb.ip46. PMID 21356943 DOI: 10.1101/Pdb.Ip46  0.735
2007 Selvin PR, Lougheed T, Tonks Hoffman M, Park H, Balci H, Blehm BH, Toprak E. Equipment Setup for Fluorescence Imaging with One-Nanometer Accuracy (FIONA). Csh Protocols. 2007: pdb.ip45. PMID 21356942 DOI: 10.1101/Pdb.Ip45  0.75
2007 Park H, Toprak E, Selvin PR. Single-molecule fluorescence to study molecular motors. Quarterly Reviews of Biophysics. 40: 87-111. PMID 17666122 DOI: 10.1017/S0033583507004611  0.754
2007 Toprak E, Balci H, Blehm BH, Selvin PR. Three-dimensional particle tracking via bifocal imaging. Nano Letters. 7: 2043-5. PMID 17583964 DOI: 10.1021/Nl0709120  0.626
2007 Toprak E, Selvin PR. New fluorescent tools for watching nanometer-scale conformational changes of single molecules. Annual Review of Biophysics and Biomolecular Structure. 36: 349-69. PMID 17298239 DOI: 10.1146/Annurev.Biophys.36.040306.132700  0.64
2006 Enderlein J, Toprak E, Selvin PR. Polarization effect on position accuracy of fluorophore localization. Optics Express. 14: 8111-20. PMID 19529183 DOI: 10.1364/Oe.14.008111  0.616
2006 Toprak E, Enderlein J, Syed S, McKinney SA, Petschek RG, Ha T, Goldman YE, Selvin PR. Defocused orientation and position imaging (DOPI) of myosin V. Proceedings of the National Academy of Sciences of the United States of America. 103: 6495-9. PMID 16614073 DOI: 10.1073/Pnas.0507134103  0.648
Low-probability matches (unlikely to be authored by this person)
2019 Cansizoglu MF, Tamer YT, Farid M, Koh AY, Toprak E. Rapid ultrasensitive detection platform for antimicrobial susceptibility testing. Plos Biology. 17: e3000291. PMID 31145726 DOI: 10.1371/Journal.Pbio.3000291  0.291
2019 Tamer YT, Gaszek IK, Abdizadeh H, Batur TA, Reynolds K, Atilgan AR, Atilgan C, Toprak E. High-order epistasis in catalytic power of dihydrofolate reductase gives rise to a rugged fitness landscape in the presence of trimethoprim selection. Molecular Biology and Evolution. PMID 30982891 DOI: 10.1093/Molbev/Msz086  0.283
2019 Peng H, Chau VQ, Phetsang W, Sebastian RM, Stone MRL, Datta S, Renwick M, Tamer YT, Toprak E, Koh AY, Blaskovich MAT, Hulleman JD. Non-antibiotic Small-Molecule Regulation of DHFR-Based Destabilizing Domains . Molecular Therapy. Methods & Clinical Development. 15: 27-39. PMID 31649953 DOI: 10.1016/J.Omtm.2019.08.002  0.277
2017 Cansizoglu MF, Toprak E. Fighting against evolution of antibiotic resistance by utilizing evolvable antimicrobial drugs. Current Genetics. PMID 28497241 DOI: 10.1007/S00294-017-0703-X  0.276
2013 Toprak E, Palmer AC, Kim S, Veres A, Bershtein S, Kishony R. Evolution of Antibiotic Resistance through a Multi-Peaked Adaptive Landscape Biophysical Journal. 104: 660a. DOI: 10.1016/J.Bpj.2012.11.3644  0.257
2017 Tamer YT, Toprak E. On the Race to Starvation: How Do Bacteria Survive High Doses of Antibiotics? Molecular Cell. 68: 1019-1021. PMID 29272702 DOI: 10.1016/J.Molcel.2017.12.004  0.253
2017 Abdizadeh H, Tamer YT, Acar O, Toprak E, Atilgan AR, Atilgan C. Increased substrate affinity in the Escherichia coli L28R dihydrofolate reductase mutant causes trimethoprim resistance. Physical Chemistry Chemical Physics : Pccp. PMID 28422217 DOI: 10.1039/C7Cp01458A  0.252
2014 Okumus B, Yildiz S, Toprak E. Fluidic and microfluidic tools for quantitative systems biology. Current Opinion in Biotechnology. 25: 30-8. PMID 24484878 DOI: 10.1016/J.Copbio.2013.08.016  0.251
2016 Ayhan DH, Tamer YT, Akbar M, Bailey SM, Wong M, Daly SM, Greenberg DE, Toprak E. Sequence-Specific Targeting of Bacterial Resistance Genes Increases Antibiotic Efficacy. Plos Biology. 14: e1002552. PMID 27631336 DOI: 10.1371/Journal.Pbio.1002552  0.25
2015 Palmer AC, Toprak E, Baym M, Kim S, Veres A, Bershtein S, Kishony R. Delayed commitment to evolutionary fate in antibiotic resistance fitness landscapes. Nature Communications. 6: 7385. PMID 26060115 DOI: 10.1038/Ncomms8385  0.25
2016 Okumus B, Landgraf D, Lai GC, Bakshi S, Arias-Castro JC, Yildiz S, Huh D, Fernandez-Lopez R, Peterson CN, Toprak E, El Karoui M, Paulsson J. Corrigendum: Mechanical slowing-down of cytoplasmic diffusion allows in vivo counting of proteins in individual cells. Nature Communications. 7: 12130. PMID 27338979 DOI: 10.1038/Ncomms12130  0.244
2012 Toprak E, Veres A, Michel JB, Chait R, Hartl DL, Kishony R. Evolutionary paths to antibiotic resistance under dynamically sustained drug selection. Nature Genetics. 44: 101-5. PMID 22179135 DOI: 10.1038/Ng.1034  0.242
2014 Oz T, Guvenek A, Yildiz S, Karaboga E, Tamer YT, Mumcuyan N, Ozan VB, Senturk GH, Cokol M, Yeh P, Toprak E. Strength of selection pressure is an important parameter contributing to the complexity of antibiotic resistance evolution. Molecular Biology and Evolution. 31: 2387-401. PMID 24962091 DOI: 10.1093/Molbev/Msu191  0.242
2016 Ayhan DH, Tamer YT, Akbar M, Greenberg DE, Toprak E. A Synthetic Knob for Modulating Antibiotic Resistance Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.2551  0.242
2015 Chevereau G, Dravecká M, Batur T, Guvenek A, Ayhan DH, Toprak E, Bollenbach T. Quantifying the Determinants of Evolutionary Dynamics Leading to Drug Resistance. Plos Biology. 13: e1002299. PMID 26581035 DOI: 10.1371/Journal.Pbio.1002299  0.237
2013 Toprak E, Veres A, Yildiz S, Pedraza JM, Chait R, Paulsson J, Kishony R. Building a morbidostat: an automated continuous-culture device for studying bacterial drug resistance under dynamically sustained drug inhibition. Nature Protocols. 8: 555-67. PMID 23429717 DOI: 10.1038/Nprot.Nprot.2013.021  0.234
2002 Toprak E, Turgut OT. Large N limit of SO(N) scalar gauge theory Journal of Mathematical Physics. 43: 1340-1352. DOI: 10.1063/1.1430898  0.205
2002 Toprak E, Turgut OT. Large N limit of SO(N) gauge theory of fermions and bosons Journal of Mathematical Physics. 43: 3074-3096. DOI: 10.1063/1.1467097  0.2
2013 Toprak E, Schnaiter M. Fluorescent biological aerosol particles measured with the Waveband Integrated Bioaerosol Sensor WIBS-4: Laboratory tests combined with a one year field study Atmospheric Chemistry and Physics. 13: 225-243. DOI: 10.5194/acp-13-225-2013  0.193
2019 Toprak E. Decision letter: Adaptation to mutational inactivation of an essential gene converges to an accessible suboptimal fitness peak Elife. DOI: 10.7554/Elife.50509.036  0.19
2015 Hummel M, Hoose C, Gallagher M, Healy DA, Huffman JA, O'Connor D, Pöschl U, Pöhlker C, Robinson NH, Schnaiter M, Sodeau JR, Stengel M, Toprak E, Vogel H. Regional-scale simulations of fungal spore aerosols using an emission parameterization adapted to local measurements of fluorescent biological aerosol particles Atmospheric Chemistry and Physics. 15: 6127-6146. DOI: 10.5194/acp-15-6127-2015  0.156
2022 Farid M, Rodrigues M, England R, Toprak E. Label-Free Optical Detection of Pathogenic Bacteria and Fungi at Extremely Low Cell Densities for Rapid Antibiotic Susceptibility Testing. Frontiers in Bioengineering and Biotechnology. 10: 884200. PMID 35845405 DOI: 10.3389/fbioe.2022.884200  0.133
2021 Tamer YT, Gaszek I, Rodrigues M, Coskun FS, Farid M, Koh AY, Russ W, Toprak E. The antibiotic efflux protein TolC is a highly evolvable target under colicin E1 or TLS phage selection. Molecular Biology and Evolution. PMID 34175926 DOI: 10.1093/molbev/msab190  0.114
2021 Tamer YT, Gaszek I, Rodrigues M, Coskun FS, Farid M, Koh AY, Russ W, Toprak E. The antibiotic efflux protein TolC is a highly evolvable target under colicin E1 or TLS phage selection. Molecular Biology and Evolution. PMID 34175926 DOI: 10.1093/molbev/msab190  0.114
2023 Cetin E, Guclu TF, Kantarcioglu I, Gaszek IK, Toprak E, Atilgan AR, Dedeoglu B, Atilgan C. Kinetic Barrier to Enzyme Inhibition Is Manipulated by Dynamical Local Interactions in DHFR. Journal of Chemical Information and Modeling. PMID 37491825 DOI: 10.1021/acs.jcim.3c00818  0.1
2021 Manna MS, Tamer YT, Gaszek I, Poulides N, Ahmed A, Wang X, Toprak FCR, Woodard DR, Koh AY, Williams NS, Borek D, Atilgan AR, Hulleman JD, Atilgan C, Tambar U, ... Toprak E, et al. A trimethoprim derivative impedes antibiotic resistance evolution. Nature Communications. 12: 2949. PMID 34011959 DOI: 10.1038/s41467-021-23191-z  0.093
2016 Köse DA, Toprak E, Kasąrci A, Avci E, Avci GA, Sąhin O, Buyükgüngör O. Synthesis, Spectral, and Thermal Studies of Co(II), Ni(II), Cu(II), and Zn(II)-Glycinato Complexes and Investigation of Their Biological Properties: Crystal Structure of [Cu(μ-gly) 2(H2O)] n Synthesis and Reactivity in Inorganic, Metal-Organic and Nano-Metal Chemistry. 46: 1109-1118. DOI: 10.1080/15533174.2013.801855  0.088
2024 Rodrigues M, Sabaeifard P, Yildiz MS, Lyon A, Coughlin L, Ahmed S, Poulides N, Toprak AC, Behrendt C, Wang X, Monogue M, Kim J, Gan S, Zhan X, Filkins L, ... ... Toprak E, et al. Susceptible bacteria "can" survive antibiotic treatment in the mammalian gastrointestinal tract without evolving resistance. Cell Host & Microbe. PMID 38359828 DOI: 10.1016/j.chom.2024.01.012  0.088
2003 Gürdal C, Aydin S, Kirimlioǧlu H, Toprak E, Şengör T. Effects of extended-wear soft contact lenses on the ocular surface and central corneal thickness Ophthalmologica. 217: 329-336. PMID 12913322 DOI: 10.1159/000071347  0.081
2023 Rodrigues M, Sabaeifard P, Yildiz MS, Coughlin L, Ahmed S, Behrendt C, Wang X, Monogue M, Kim J, Gan S, Zhan X, Filkins L, Williams NS, Hooper LV, Koh AY, ... Toprak E, et al. Susceptible bacteria survive antibiotic treatment in the mammalian gastrointestinal tract without evolving resistance. Biorxiv : the Preprint Server For Biology. PMID 36711614 DOI: 10.1101/2023.01.11.523617  0.08
2015 Kupiszewski P, Weingartner E, Vochezer P, Schnaiter M, Bigi A, Gysel M, Rosati B, Toprak E, Mertes S, Baltensperger U. The Ice Selective Inlet: A novel technique for exclusive extraction of pristine ice crystals in mixed-phase clouds Atmospheric Measurement Techniques. 8: 3087-3106. DOI: 10.5194/amt-8-3087-2015  0.077
2014 Güngör B, Özcan KS, Erdinler İ, Ekmekçi A, Alper AT, Osmonov D, Çalık N, Akyuz S, Toprak E, Yılmaz H, Yıldırım A, Bolca O. Elevated levels of RDW is associated with non-valvular atrial fibrillation. Journal of Thrombosis and Thrombolysis. 37: 404-10. PMID 23821044 DOI: 10.1007/s11239-013-0957-1  0.075
2014 Köse DA, Toprak E, Avci E, Avci GA, Şahin O, Büyükgüngör O. Synthesis, spectral, thermal studies of Co(II), Ni(II), Cu(II) and Zn(II)-arginato Complexes. crystal structure of monoaquabis(arginato-κO, κN)copper(II). [Cu(arg)2(H2O)].NaNO3 Journal of the Chinese Chemical Society. 61: 881-890. DOI: 10.1002/Jccs.201300351  0.067
2012 Üçkuyu A, ÇIftçI FC, ÇIftçI O, ÖzçImen EE, Toprak E, Turhan E. Effect of ovulation induction on QT dispersion in electrocardiography Turkish Journal of Medical Sciences. 42: 491-496. DOI: 10.3906/sag-1010-1249  0.067
2006 Askar N, Cirpan T, Toprak E, Karabulut B, Selvi N, Terek MC, Uslu R, Sanli UA, Goker E. Arsenic trioxide exposure to ovarian carcinoma cells leads to decreased level of topoisomerase II and cytotoxicity International Journal of Gynecological Cancer. 16: 1552-1556. PMID 16884364 DOI: 10.1111/j.1525-1438.2006.00626.x  0.059
2014 Özcan KS, Osmonov D, Toprak E, Güngör B, Tatlisu A, Ekmekçi A, Kaya A, Tayyareci G, Erdinler I. Sick euthyroid syndrome is associated with poor prognosis in patients with ST segment elevation myocardial infarction undergoing primary percutaneous intervention Cardiology Journal. 21: 238-244. DOI: 10.5603/CJ.a2013.0108  0.056
2010 Uckuyu A, Ciftci CF, Ozcimen EE, Ciftci O, Toprak E, Turhan E. Effect of controlled ovarian hyperstimulation treatment on cardiac function Journal of Reproductive Medicine For the Obstetrician and Gynecologist. 55: 503-508. PMID 21291037  0.05
2016 Karadeli E, Uckuyu A, Ciftci FC, Toprak E, Turhan E, Ozcimen E, Niron EA. Polycystic ovary syndrome: The correlation between renal doppler ultrasound and laboratory parameters Journal of Clinical and Analytical Medicine. 7. DOI: 10.4328/JCAM.3409  0.049
2010 Toprak E, Özkanal B, Aydin S, Kaya S. Ethics in e-learning Turkish Online Journal of Educational Technology. 9: 78-86.  0.047
2016 Unler GK, Gokturk HS, Toprak E, Erinanc OH, Korkmaz H. Does the presence of endometrial polyp predict colorectal polyp? American Journal of the Medical Sciences. 351: 129-132. DOI: 10.1016/j.amjms.2015.11.006  0.044
2011 Cilli A, Batmaz F, Demir I, Boz A, Toprak E, Ozdemir T, Peker Y. The diagnostic yield of exercise stress testing as a screening tool for subclinical coronary artery disease in patients with moderate to severe obstructive sleep apnea Journal of Clinical Sleep Medicine. 7: 25-29. PMID 21344047  0.041
2012 Turk E, Karagulle E, Oguz H, Toprak E. Indirect hernial sac containing the uterus, ovary, and fallopian tube in association with a giant intraabdominal lipoma: Report of a case Hernia. 16: 593-595. PMID 21267614 DOI: 10.1007/s10029-011-0790-4  0.04
2006 Ulukuş M, Eroǧlu Z, Yeniel AO, Toprak E, Kosova B, Turan OD. Frequency of factor V Leiden (G1691A), prothrombin (G20210A) and methylenetetrahydrofolate reductase (C677T) genes mutations in woman with adverse pregnancy outcome Journal of the Turkish German Gynecology Association. 7: 195-201.  0.039
2015 Toprak E, Göktürk HS, Tolu A. A new technique for the removal of a transmigrated intrauterine device with rectum penetration Turkish Journal of Gastroenterology. 26: 82-84. PMID 25698284 DOI: 10.5152/tjg.2015.5050  0.039
2013 Ekmekçi A, Özcan KS, Güngör B, Abaci N, Osmonov D, Zencirci A, Toprak E, Dönmez C, Üstek D, Güleç C, Eren M. The relationship between endothelial nitric oxide synthase 4a/4b gene polymorphism and premature coronary artery disease Acta Cardiologica. 68: 464-468. PMID 24283106 DOI: 10.2143/AC.68.5.2994468  0.035
2006 Toprak E. Social constructivism and international cooperation in Distance Education Turkish Online Journal of Distance Education. 7: 174-183.  0.033
2010 Turhan E, Üçkuyu A, Özçimen EE, Çiftçi FCS, Toprak E. Postmenopozal adneksi̇yal ki̇tlelerde düşük serum FSH düzeyleri̇ granuloza hücreli̇ tümörlere i̇şaret edebi̇li̇r: Li̇teratür işiǧ inda i̇ki̇ olgunun deǧerlendi̇ri̇lmesi̇ Turk Jinekolojik Onkoloji Dergisi. 13: 19-22.  0.033
2014 Güngör B, Ozcan KS, Ozpamuk Karadeniz F, Uluganyan M, Ekmekçi A, Alper AT, Osmonov D, Karataş B, Toprak E, Erdinler IC, Bolca O. Red cell distribution width is increased in patients with ascending aortic dilatation. TüRk Kardiyoloji DerneğI ArşIvi : TüRk Kardiyoloji DerneğInin YayıN OrganıDıR. 42: 227-35. PMID 24769814 DOI: 10.5543/tkda.2014.77508  0.029
2011 Barkan M, Toprak E, Kumtepe AT, Kumtepe EG, Ataizi M, Pilanci H, Mutlu ME, Kayabas I, Kayabas BK. Eliminating language barriers online at European prisons (ELBEP): A case-study Educational Media International. 48: 235-248. DOI: 10.1080/09523987.2011.615160  0.026
2012 Polatlı M, Bilgin C, Şaylan B, Başlılar Ş, Toprak E, Ergen H, Bakan ND, Kart L, Kılıç Z, Üstünel A, Şengün A, Varol Y, Yılmaz A, Ataol Ç, Bulgur D, et al. A cross sectional observational study on the influence of chronic obstructive pulmonary disease on activities of daily living: the COPD-Life study. TüBerküLoz Ve Toraks. 60: 1-12. PMID 22554361 DOI: 10.5578/tt.3414  0.024
2009 Anil M, Helvaci M, Ozkalay N, Toprak E, Anil AB, Dilek M, Agus N. Salmonella typhimurium outbreak in a neonatal unit in Turkey. Indian Journal of Pediatrics. 76: 629-33. PMID 19418032 DOI: 10.1007/s12098-009-0083-4  0.023
2011 Tasçi D, Gökalp E, Genç Kumtepe E, Kumtepe AT, Toprak E. City's perception of university: The case of Anadolu University and Eskişehir Amme Idaresi Dergisi. 44: 131-146.  0.014
2014 Aksoy S, Durmuş G, Özcan S, Toprak E, Gurkan U, Oz D, Canga Y, Karatas B, Duman D. Is left ventricular diastolic dysfunction independent from presence of hypertension in metabolic syndrome? An echocardiographic study. Journal of Cardiology. 64: 194-8. PMID 24525047 DOI: 10.1016/j.jjcc.2014.01.002  0.012
2015 Özcan KS, Güngör B, Osmonov D, Tekkeşin AI, Altay S, Ekmekçi A, Toprak E, Yildirim E, Çalik N, Alper AT, Gürkan K, Erdinler I. Management and outcome of topical beta-blocker-induced atrioventricular block. Cardiovascular Journal of Africa. 26: 210-213. PMID 26659434 DOI: 10.5830/CVJA-2015-030  0.01
2014 Ciftci FC, Caliskan M, Ciftci O, Gullu H, Uckuyu A, Toprak E, Yanik F. Impaired coronary microvascular function and increased intima-media thickness in preeclampsia. Journal of the American Society of Hypertension : Jash. 8: 820-6. PMID 25455007 DOI: 10.1016/j.jash.2014.08.012  0.01
2013 Ekmekçid A, Özcan KS, Abaci N, GüngöR B, Osmonov D, Tosu R, Toprak E, Güleç C, Üstek D, ÖZ D, Eren M. The relationship between coronary artery ectasia and eNOS intron 4a/b gene polymorphisms Acta Cardiologica. 68: 19-22. PMID 23457905 DOI: 10.2143/AC.68.1.2959627  0.01
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