Pamela J. Kennedy - Publications

Affiliations: 
Icahn School of Medicine at Mount Sinai, New York, NY, United States 
Area:
Learning & memory, and addiction

56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Cates HM, Li X, Purushothaman I, Kennedy PJ, Shen L, Shaham Y, Nestler EJ. Genome-wide transcriptional profiling of central amygdala and orbitofrontal cortex during incubation of methamphetamine craving. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. PMID 30072726 DOI: 10.1038/S41386-018-0158-X  1
2016 Cahill ME, Bagot RC, Gancarz AM, Walker DM, Sun H, Wang ZJ, Heller EA, Feng J, Kennedy PJ, Koo JW, Cates HM, Neve RL, Shen L, Dietz DM, Nestler EJ. Bidirectional Synaptic Structural Plasticity after Chronic Cocaine Administration Occurs through Rap1 Small GTPase Signaling. Neuron. 89: 566-82. PMID 26844834 DOI: 10.1016/J.Neuron.2016.01.031  1
2015 González-Delgado JA, Kennedy P, Ferreira M, Tome JP, Sarmento B. Use of photosensitizers in semisolid formulations for microbial photodynamic inactivation. Journal of Medicinal Chemistry. PMID 26569024 DOI: 10.1021/acs.jmedchem.5b01129  0.01
2015 Kelly JR, Kennedy PJ, Cryan JF, Dinan TG, Clarke G, Hyland NP. Breaking down the barriers: the gut microbiome, intestinal permeability and stress-related psychiatric disorders. Frontiers in Cellular Neuroscience. 9: 392. PMID 26528128 DOI: 10.3389/fncel.2015.00392  0.08
2015 Feng J, Wilkinson M, Liu X, Purushothaman I, Ferguson D, Vialou V, Maze I, Shao N, Kennedy P, Koo J, Dias C, Laitman B, Stockman V, LaPlant Q, Cahill ME, et al. Erratum to: Chronic cocaine-regulated epigenomic changes in mouse nucleus accumbens. Genome Biology. 16: 227. PMID 26467768 DOI: 10.1186/S13059-015-0789-8  1
2015 Eagle AL, Gajewski PA, Yang M, Kechner ME, Al Masraf BS, Kennedy PJ, Wang H, Mazei-Robison MS, Robison AJ. Experience-Dependent Induction of Hippocampal ΔFosB Controls Learning. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 35: 13773-83. PMID 26446228 DOI: 10.1523/Jneurosci.2083-15.2015  1
2015 Sun H, Damez-Werno DM, Scobie KN, Shao NY, Dias C, Rabkin J, Koo JW, Korb E, Bagot RC, Ahn FH, Cahill ME, Labonté B, Mouzon E, Heller EA, Cates H, ... ... Kennedy PJ, et al. ACF chromatin-remodeling complex mediates stress-induced depressive-like behavior. Nature Medicine. PMID 26390241 DOI: 10.1038/Nm.3939  1
2015 Ohnishi YH, Ohnishi YN, Nakamura T, Ohno M, Kennedy PJ, Ohkawa Y, Nishi A, Neve R, Tsuzuki T, Nestler EJ. Correction: PSMC5, a 19S Proteasomal ATPase, Regulates Cocaine Action in the Nucleus Accumbens. Plos One. 10: e0131263. PMID 26110846 DOI: 10.1371/Journal.Pone.0131263  1
2015 Song R, Catchpoole DR, Kennedy PJ, Li J. Identification of lung cancer miRNA-miRNA co-regulation networks through a progressive data refining approach. Journal of Theoretical Biology. 380: 271-279. PMID 26026830 DOI: 10.1016/j.jtbi.2015.05.025  0.04
2015 Li X, Rubio FJ, Zeric T, Bossert JM, Kambhampati S, Cates HM, Kennedy PJ, Liu QR, Cimbro R, Hope BT, Nestler EJ, Shaham Y. Incubation of methamphetamine craving is associated with selective increases in expression of BDNF and trkb, glutamate receptors, and epigenetic enzymes in cue-activated fos-expressing dorsal striatal neurons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 35: 8232-44. PMID 26019338 DOI: 10.1523/Jneurosci.1022-15.2015  1
2015 Massart R, Barnea R, Dikshtein Y, Suderman M, Meir O, Hallett M, Kennedy P, Nestler EJ, Szyf M, Yadid G. Role of DNA methylation in the nucleus accumbens in incubation of cocaine craving. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 35: 8042-58. PMID 26019323 DOI: 10.1523/Jneurosci.3053-14.2015  1
2015 Ohnishi YH, Ohnishi YN, Nakamura T, Ohno M, Kennedy PJ, Yasuyuki O, Nishi A, Neve R, Tsuzuki T, Nestler EJ. PSMC5, a 19S Proteasomal ATPase, Regulates Cocaine Action in the Nucleus Accumbens. Plos One. 10: e0126710. PMID 25962134 DOI: 10.1371/Journal.Pone.0126710  1
2015 Anaissi A, Goyal M, Catchpoole DR, Braytee A, Kennedy PJ. Case-based retrieval framework for gene expression data. Cancer Informatics. 14: 21-31. PMID 25861214 DOI: 10.4137/CIN.S22371  0.04
2015 Feng J, Shao N, Szulwach KE, Vialou V, Huynh J, Zhong C, Le T, Ferguson D, Cahill ME, Li Y, Koo JW, Ribeiro E, Labonte B, Laitman BM, Estey D, ... ... Kennedy P, et al. Role of Tet1 and 5-hydroxymethylcytosine in cocaine action. Nature Neuroscience. 18: 536-44. PMID 25774451 DOI: 10.1038/Nn.3976  1
2015 Goodswen SJ, Barratt JL, Kennedy PJ, Ellis JT. Improving the gene structure annotation of the apicomplexan parasite Neospora caninum fulfils a vital requirement towards an in silico-derived vaccine. International Journal For Parasitology. 45: 305-18. PMID 25747726 DOI: 10.1016/j.ijpara.2015.01.006  0.04
2015 Prenderville JA, Kennedy PJ, Dinan TG, Cryan JF. Adding fuel to the fire: the impact of stress on the ageing brain. Trends in Neurosciences. 38: 13-25. PMID 25705750 DOI: 10.1016/j.tins.2014.11.001  0.08
2015 Kennedy PJ, Allen AP, O'Neill A, Quigley EM, Cryan JF, Dinan TG, Clarke G. Acute tryptophan depletion reduces kynurenine levels: implications for treatment of impaired visuospatial memory performance in irritable bowel syndrome. Psychopharmacology. 232: 1357-71. PMID 25338777 DOI: 10.1007/s00213-014-3767-z  0.08
2015 Heller EA, Kaska S, Fallon B, Ferguson D, Kennedy PJ, Neve RL, Nestler EJ, Mazei-Robison MS. Morphine and cocaine increase serum- and glucocorticoid-inducible kinase 1 activity in the ventral tegmental area. Journal of Neurochemistry. 132: 243-53. PMID 25099208 DOI: 10.1111/Jnc.12925  1
2015 Kennedy PJ, Harvey E. Histone deacetylases as potential targets for cocaine addiction Cns and Neurological Disorders - Drug Targets. 14: 764-772.  1
2014 Goodswen SJ, Kennedy PJ, Ellis JT. Enhancing in silico protein-based vaccine discovery for eukaryotic pathogens using predicted peptide-MHC binding and peptide conservation scores. Plos One. 9: e115745. PMID 25545691 DOI: 10.1371/journal.pone.0115745  0.04
2014 Dias C, Feng J, Sun H, Shao NY, Mazei-Robison MS, Damez-Werno D, Scobie K, Bagot R, LaBonté B, Ribeiro E, Liu X, Kennedy P, Vialou V, Ferguson D, Peña C, et al. β-catenin mediates stress resilience through Dicer1/microRNA regulation. Nature. 516: 51-5. PMID 25383518 DOI: 10.1038/Nature13976  1
2014 Kennedy PJ, Cryan JF, Dinan TG, Clarke G. Irritable bowel syndrome: a microbiome-gut-brain axis disorder? World Journal of Gastroenterology : Wjg. 20: 14105-25. PMID 25339800 DOI: 10.3748/wjg.v20.i39.14105  0.08
2014 Kennedy PJ. Preface to psychotherapy, the affordable care act, and mental health parity: obstacles to implementation. Psychodynamic Psychiatry. 42: 343-4. PMID 25211427 DOI: 10.1521/pdps.2014.42.3.343  0.01
2014 Tafavogh S, Catchpoole DR, Kennedy PJ. Cellular quantitative analysis of neuroblastoma tumor and splitting overlapping cells. Bmc Bioinformatics. 15: 272. PMID 25109603 DOI: 10.1186/1471-2105-15-272  0.04
2014 Goodswen SJ, Kennedy PJ, Ellis JT. Discovering a vaccine against neosporosis using computers: is it feasible? Trends in Parasitology. 30: 401-11. PMID 25028089 DOI: 10.1016/j.pt.2014.06.004  0.04
2014 Clarke G, Stilling RM, Kennedy PJ, Stanton C, Cryan JF, Dinan TG. Minireview: Gut microbiota: the neglected endocrine organ. Molecular Endocrinology (Baltimore, Md.). 28: 1221-38. PMID 24892638 DOI: 10.1210/Me.2014-1108  0.08
2014 Goodswen SJ, Kennedy PJ, Ellis JT. Vacceed: a high-throughput in silico vaccine candidate discovery pipeline for eukaryotic pathogens based on reverse vaccinology. Bioinformatics (Oxford, England). 30: 2381-3. PMID 24790156 DOI: 10.1093/bioinformatics/btu300  0.04
2014 Feng J, Wilkinson M, Liu X, Purushothaman I, Ferguson D, Vialou V, Maze I, Shao N, Kennedy P, Koo J, Dias C, Laitman B, Stockman V, LaPlant Q, Cahill ME, et al. Chronic cocaine-regulated epigenomic changes in mouse nucleus accumbens. Genome Biology. 15: R65. PMID 24758366 DOI: 10.1186/Gb-2014-15-4-R65  1
2014 Sarkar A, Chachra P, Kennedy P, Pena CJ, Desouza LA, Nestler EJ, Vaidya VA. Hippocampal HDAC4 contributes to postnatal fluoxetine-evoked depression-like behavior. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. 39: 2221-32. PMID 24663010 DOI: 10.1038/Npp.2014.73  1
2014 Maze I, Chaudhury D, Dietz DM, Von Schimmelmann M, Kennedy PJ, Lobo MK, Sillivan SE, Miller ML, Bagot RC, Sun H, Turecki G, Neve RL, Hurd YL, Shen L, Han MH, et al. G9a influences neuronal subtype specification in striatum. Nature Neuroscience. 17: 533-9. PMID 24584053 DOI: 10.1038/Nn.3670  1
2014 Allen AP, Kennedy PJ, Cryan JF, Dinan TG, Clarke G. Biological and psychological markers of stress in humans: focus on the Trier Social Stress Test. Neuroscience and Biobehavioral Reviews. 38: 94-124. PMID 24239854 DOI: 10.1016/j.neubiorev.2013.11.005  0.08
2014 Dietz DM, Kennedy PJ, Sun H, Maze I, Gancarz AM, Vialou V, Koo JW, Mouzon E, Ghose S, Tamminga CA, Nestler EJ. ΔFosB induction in prefrontal cortex by antipsychotic drugs is associated with negative behavioral outcomes. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. 39: 538-44. PMID 24067299 DOI: 10.1038/Npp.2013.255  1
2013 Goodswen SJ, Kennedy PJ, Ellis JT. A novel strategy for classifying the output from an in silico vaccine discovery pipeline for eukaryotic pathogens using machine learning algorithms. Bmc Bioinformatics. 14: 315. PMID 24180526 DOI: 10.1186/1471-2105-14-315  0.04
2013 Kennedy PJ, Greden JF, Riba M. The next 50 years: a new vision of "Community of Mental Health". The American Journal of Psychiatry. 170: 1097-8. PMID 24084813 DOI: 10.1176/appi.ajp.2013.13060827  0.01
2013 Anaissi A, Kennedy PJ, Goyal M, Catchpoole DR. A balanced iterative random forest for gene selection from microarray data. Bmc Bioinformatics. 14: 261. PMID 23981907 DOI: 10.1186/1471-2105-14-261  0.04
2013 Kennedy PJ, Feng J, Robison AJ, Maze I, Badimon A, Mouzon E, Chaudhury D, Damez-Werno DM, Haggarty SJ, Han MH, Bassel-Duby R, Olson EN, Nestler EJ. Class I HDAC inhibition blocks cocaine-induced plasticity by targeted changes in histone methylation. Nature Neuroscience. 16: 434-40. PMID 23475113 DOI: 10.1038/Nn.3354  1
2013 Golden SA, Christoffel DJ, Heshmati M, Hodes GE, Magida J, Davis K, Cahill ME, Dias C, Ribeiro E, Ables JL, Kennedy PJ, Robison AJ, Gonzalez-Maeso J, Neve RL, Turecki G, et al. Epigenetic regulation of RAC1 induces synaptic remodeling in stress disorders and depression. Nature Medicine. 19: 337-44. PMID 23416703 DOI: 10.1038/Nm.3090  1
2013 Tafavogh S, Navarro KF, Catchpoole DR, Kennedy PJ. Non-parametric and integrated framework for segmenting and counting neuroblastic cells within neuroblastoma tumor images. Medical & Biological Engineering & Computing. 51: 645-55. PMID 23359256 DOI: 10.1007/s11517-013-1034-9  0.04
2013 Goodswen SJ, Kennedy PJ, Ellis JT. A guide to in silico vaccine discovery for eukaryotic pathogens. Briefings in Bioinformatics. 14: 753-74. PMID 23097412 DOI: 10.1093/bib/bbs066  0.04
2013 Goodswen SJ, Kennedy PJ, Ellis JT. A review of the infection, genetics, and evolution of Neospora caninum: from the past to the present. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 13: 133-50. PMID 22985682 DOI: 10.1016/j.meegid.2012.08.012  0.04
2013 Warren BL, Vialou VF, Iñiguez SD, Alcantara LF, Wright KN, Feng J, Kennedy PJ, Laplant Q, Shen L, Nestler EJ, Bolaños-Guzmán CA. Neurobiological sequelae of witnessing stressful events in adult mice. Biological Psychiatry. 73: 7-14. PMID 22795644 DOI: 10.1016/J.Biopsych.2012.06.006  1
2013 Sun H, Kennedy PJ, Nestler EJ. Epigenetics of the depressed brain: role of histone acetylation and methylation. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. 38: 124-37. PMID 22692567 DOI: 10.1038/Npp.2012.73  1
2012 Goodswen SJ, Kennedy PJ, Ellis JT. Evaluating high-throughput ab initio gene finders to discover proteins encoded in eukaryotic pathogen genomes missed by laboratory techniques. Plos One. 7: e50609. PMID 23226328 DOI: 10.1371/journal.pone.0050609  0.04
2012 Sun H, Maze I, Dietz DM, Scobie KN, Kennedy PJ, Damez-Werno D, Neve RL, Zachariou V, Shen L, Nestler EJ. Morphine epigenomically regulates behavior through alterations in histone H3 lysine 9 dimethylation in the nucleus accumbens. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 17454-64. PMID 23197736 DOI: 10.1523/Jneurosci.1357-12.2012  1
2012 Ellis J, Goodswen S, Kennedy PJ, Bush S. The core mouse response to infection by neospora caninum defined by gene set enrichment analyses. Bioinformatics and Biology Insights. 6: 187-202. PMID 23012496 DOI: 10.4137/BBI.S9954  0.04
2012 Kurita M, Holloway T, García-Bea A, Kozlenkov A, Friedman AK, Moreno JL, Heshmati M, Golden SA, Kennedy PJ, Takahashi N, Dietz DM, Mocci G, Gabilondo AM, Hanks J, Umali A, et al. HDAC2 regulates atypical antipsychotic responses through the modulation of mGlu2 promoter activity. Nature Neuroscience. 15: 1245-54. PMID 22864611 DOI: 10.1038/Nn.3181  1
2012 Leslie JC, Norwood K, Kennedy PJ, Begley M, Shaw D. Facilitation of extinction of operant behaviour in C57Bl/6 mice by chlordiazepoxide and D-cycloserine. Psychopharmacology. 223: 223-35. PMID 22526539 DOI: 10.1007/S00213-012-2710-4  0.08
2012 Fritz GK, Kennedy PJ. The long road ahead to mental health parity. Journal of the American Academy of Child and Adolescent Psychiatry. 51: 458-60. PMID 22525950 DOI: 10.1016/j.jaac.2012.02.003  0.01
2012 Kennedy PJ, Clarke G, Quigley EM, Groeger JA, Dinan TG, Cryan JF. Gut memories: towards a cognitive neurobiology of irritable bowel syndrome. Neuroscience and Biobehavioral Reviews. 36: 310-40. PMID 21777613 DOI: 10.1016/J.Neubiorev.2011.07.001  0.08
2011 Wilkinson MB, Dias C, Magida J, Mazei-Robison M, Lobo M, Kennedy P, Dietz D, Covington H, Russo S, Neve R, Ghose S, Tamminga C, Nestler EJ. A novel role of the WNT-dishevelled-GSK3β signaling cascade in the mouse nucleus accumbens in a social defeat model of depression. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 9084-92. PMID 21697359 DOI: 10.1523/Jneurosci.0039-11.2011  1
2010 Lobo MK, Covington HE, Chaudhury D, Friedman AK, Sun H, Damez-Werno D, Dietz DM, Zaman S, Koo JW, Kennedy PJ, Mouzon E, Mogri M, Neve RL, Deisseroth K, Han MH, et al. Cell type-specific loss of BDNF signaling mimics optogenetic control of cocaine reward. Science (New York, N.Y.). 330: 385-90. PMID 20947769 DOI: 10.1126/Science.1188472  1
2009 Kennedy PJ, Shapiro ML. Motivational states activate distinct hippocampal representations to guide goal-directed behaviors. Proceedings of the National Academy of Sciences of the United States of America. 106: 10805-10. PMID 19528659 DOI: 10.1073/Pnas.0903259106  1
2007 Shapiro ML, Kennedy PJ, Ferbinteanu J. Representing episodes in the mammalian brain [Curr Opin Neurobiol 2006, 16:701-709] (DOI:10.1016/j.conb.2006.08.017) Current Opinion in Neurobiology. 17: 394. DOI: 10.1016/J.Conb.2007.04.011  1
2006 Shapiro ML, Kennedy PJ, Ferbinteanu J. Representing episodes in the mammalian brain. Current Opinion in Neurobiology. 16: 701-9. PMID 17084616 DOI: 10.1016/J.Conb.2006.08.017  1
2006 Ferbinteanu J, Kennedy PJ, Shapiro ML. Episodic memory--from brain to mind. Hippocampus. 16: 691-703. PMID 16906530 DOI: 10.1002/Hipo.20204  1
2004 Kennedy PJ, Shapiro ML. Retrieving memories via internal context requires the hippocampus. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 24: 6979-85. PMID 15295033 DOI: 10.1523/Jneurosci.1388-04.2004  1
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