| Year |
Citation |
Score |
| 2024 |
Ochman H, Quandt EM, Gottell N, Gilbert JA. Examining the taxonomic distribution of tetracycline resistance in a wastewater plant. Sustainable Microbiology. 1: qvad003. PMID 38317688 DOI: 10.1093/sumbio/qvad003 |
0.344 |
|
| 2023 |
Uz-Zaman MH, D'Alton S, Barrick JE, Ochman H. Promoter capture drives the emergence of proto-genes in . Biorxiv : the Preprint Server For Biology. PMID 38013999 DOI: 10.1101/2023.11.15.567300 |
0.38 |
|
| 2023 |
Nishida AH, Ochman H. Origins and Evolution of Novel in Captive Apes. Biorxiv : the Preprint Server For Biology. PMID 37961372 DOI: 10.1101/2023.10.20.563286 |
0.328 |
|
| 2023 |
Cobo-Simón M, Hart R, Ochman H. Gene flow and species boundaries of the genus . Msystems. e0029223. PMID 37486130 DOI: 10.1128/msystems.00292-23 |
0.328 |
|
| 2023 |
Cobo-Simón M, Hart R, Ochman H. Escherichia Coli: What Is and Which Are? Molecular Biology and Evolution. 40. PMID 36585846 DOI: 10.1093/molbev/msac273 |
0.304 |
|
| 2022 |
Kirchberger PC, Martinez ZA, Ochman H. Organizing the Global Diversity of Microviruses. Mbio. e0058822. PMID 35491833 DOI: 10.1128/mbio.00588-22 |
0.343 |
|
| 2021 |
Kirchberger PC, Martinez ZA, Luker LJ, Ochman H. Defensive hypervariable regions confer superinfection exclusion in microviruses. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34244443 DOI: 10.1073/pnas.2102786118 |
0.347 |
|
| 2020 |
Bobay LM, O'Donnell AC, Ochman H. Recombination events are concentrated in the spike protein region of Betacoronaviruses. Plos Genetics. 16: e1009272. PMID 33332358 DOI: 10.1371/journal.pgen.1009272 |
0.34 |
|
| 2020 |
Kirchberger PC, Schmidt M, Ochman H. The Ingenuity of Bacterial Genomes. Annual Review of Microbiology. PMID 32692614 DOI: 10.1146/Annurev-Micro-020518-115822 |
0.5 |
|
| 2020 |
Kirchberger PC, Ochman H. Resurrection of a global, metagenomically defined Gokushovirus. Elife. 9. PMID 32101162 DOI: 10.7554/Elife.51599 |
0.471 |
|
| 2019 |
Moran NA, Ochman H, Hammer TJ. Evolutionary and ecological consequences of gut microbial communities. Annual Review of Ecology, Evolution, and Systematics. 50: 451-475. PMID 32733173 DOI: 10.1146/Annurev-Ecolsys-110617-062453 |
0.567 |
|
| 2019 |
Nishida AH, Ochman H. A great-ape view of the gut microbiome. Nature Reviews. Genetics. PMID 30622302 DOI: 10.1038/S41576-018-0085-Z |
0.389 |
|
| 2018 |
Bobay LM, Ochman H. Factors driving effective population size and pan-genome evolution in bacteria. Bmc Evolutionary Biology. 18: 153. PMID 30314447 DOI: 10.1186/S12862-018-1272-4 |
0.355 |
|
| 2018 |
Bobay LM, Ochman H. Biological species in the viral world. Proceedings of the National Academy of Sciences of the United States of America. PMID 29784828 DOI: 10.1073/Pnas.1717593115 |
0.41 |
|
| 2018 |
Bobay LM, Ellis BS, Ochman H. ConSpeciFix: Classifying prokaryotic species based on gene flow. Bioinformatics (Oxford, England). PMID 29771275 DOI: 10.1093/Bioinformatics/Bty400 |
0.313 |
|
| 2018 |
Quandt EM, Traverse CC, Ochman H. Local genic base composition impacts protein production and cellular fitness. Peerj. 6: e4286. PMID 29362699 DOI: 10.7717/Peerj.4286 |
0.353 |
|
| 2018 |
Costea PI, Hildebrand F, Manimozhiyan A, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, ... Ochman H, et al. Enterotypes in the landscape of gut microbial community composition. Nature Microbiology. 3: 8-16. PMID 29255284 DOI: 10.1038/S41564-017-0072-8 |
0.329 |
|
| 2017 |
Nishida AH, Ochman H. Rates of Gut Microbiome Divergence in Mammals. Molecular Ecology. PMID 29290090 DOI: 10.1111/Mec.14473 |
0.416 |
|
| 2017 |
Bobay LM, Ochman H. Impact of Recombination on the Base Composition of Bacteria and Archaea. Molecular Biology and Evolution. 34: 2627-2636. PMID 28957503 DOI: 10.1093/Molbev/Msx189 |
0.481 |
|
| 2017 |
Traverse CC, Ochman H. Genome-Wide Spectra of Transcription Insertions and Deletions Reveal That Slippage Depends on RNA:DNA Hybrid Complementarity. Mbio. 8. PMID 28851848 DOI: 10.1128/Mbio.01230-17 |
0.421 |
|
| 2017 |
Bobay LM, Ochman H. The Evolution of Bacterial Genome Architecture. Frontiers in Genetics. 8: 72. PMID 28611826 DOI: 10.3389/Fgene.2017.00072 |
0.539 |
|
| 2017 |
Raymann K, Moeller AH, Goodman AL, Ochman H. Unexplored Archaeal Diversity in the Great Ape Gut Microbiome. Msphere. 2. PMID 28251182 DOI: 10.1128/mSphere.00026-17 |
0.582 |
|
| 2016 |
Moeller AH, Caro-Quintero A, Mjungu D, Georgiev AV, Lonsdorf EV, Muller MN, Pusey AE, Peeters M, Hahn BH, Ochman H. Cospeciation of gut microbiota with hominids. Science (New York, N.Y.). 353: 380-382. PMID 27463672 DOI: 10.1126/Science.Aaf3951 |
0.454 |
|
| 2016 |
Wexler AG, Bao Y, Whitney JC, Bobay LM, Xavier JB, Schofield WB, Barry NA, Russell AB, Tran BQ, Goo YA, Goodlett DR, Ochman H, Mougous JD, Goodman AL. Human symbionts inject and neutralize antibacterial toxins to persist in the gut. Proceedings of the National Academy of Sciences of the United States of America. PMID 26957597 DOI: 10.1073/Pnas.1525637113 |
0.596 |
|
| 2016 |
Ochman H. Realizing Microbial Evolution. Cold Spring Harbor Perspectives in Biology. PMID 26933190 DOI: 10.1101/Cshperspect.A018101 |
0.5 |
|
| 2016 |
Traverse CC, Ochman H. Conserved rates and patterns of transcription errors across bacterial growth states and lifestyles. Proceedings of the National Academy of Sciences of the United States of America. PMID 26884158 DOI: 10.1073/Pnas.1525329113 |
0.322 |
|
| 2016 |
Moeller AH, Foerster S, Wilson ML, Pusey AE, Hahn BH, Ochman H. Social behavior shapes the chimpanzee pan-microbiome. Science Advances. 2: e1500997. PMID 26824072 DOI: 10.1126/Sciadv.1500997 |
0.331 |
|
| 2015 |
Caro-Quintero A, Ochman H. Assessing the Unseen Bacterial Diversity in Microbial Communities. Genome Biology and Evolution. PMID 26615218 DOI: 10.1093/Gbe/Evv234 |
0.455 |
|
| 2015 |
Bobay LM, Traverse CC, Ochman H. Impermanence of bacterial clones. Proceedings of the National Academy of Sciences of the United States of America. 112: 8893-900. PMID 26195749 DOI: 10.1073/Pnas.1501724112 |
0.52 |
|
| 2015 |
Kelkar YD, Phillips DS, Ochman H. Effects of Genic Base Composition on Growth Rate in G+C-rich Genomes. G3 (Bethesda, Md.). 5: 1247-52. PMID 25897009 DOI: 10.1534/G3.115.016824 |
0.427 |
|
| 2015 |
Waldor MK, Tyson G, Borenstein E, Ochman H, Moeller A, Finlay BB, Kong HH, Gordon JI, Nelson KE, Dabbagh K, Smith H. Where next for microbiome research? Plos Biology. 13: e1002050. PMID 25602283 DOI: 10.1371/Journal.Pbio.1002050 |
0.361 |
|
| 2015 |
Raghavan R, Kacharia FR, Millar JA, Sislak CD, Ochman H. Genome rearrangements can make and break small RNA genes. Genome Biology and Evolution. 7: 557-66. PMID 25601101 DOI: 10.1093/Gbe/Evv009 |
0.505 |
|
| 2015 |
Moeller AH, Peeters M, Ayouba A, Ngole EM, Esteban A, Hahn BH, Ochman H. Stability of the gorilla microbiome despite simian immunodeficiency virus infection. Molecular Ecology. 24: 690-7. PMID 25545295 DOI: 10.1111/Mec.13057 |
0.325 |
|
| 2015 |
Kelkar YD, Phillips DS, Ochman H. Corrigendum [G3 Genes Genomes Genetics. (2015) 5: 1247-1252] G3: Genes, Genomes, Genetics. 5: 2921. DOI: 10.1534/G3.115.024042 |
0.421 |
|
| 2014 |
Moeller AH, Li Y, Mpoudi Ngole E, Ahuka-Mundeke S, Lonsdorf EV, Pusey AE, Peeters M, Hahn BH, Ochman H. Rapid changes in the gut microbiome during human evolution. Proceedings of the National Academy of Sciences of the United States of America. 111: 16431-5. PMID 25368157 DOI: 10.1073/Pnas.1419136111 |
0.381 |
|
| 2014 |
Moeller AH, Ochman H. Microbiomes are true to type. Proceedings of the National Academy of Sciences of the United States of America. 111: 9372-3. PMID 24938784 DOI: 10.1073/Pnas.1408654111 |
0.396 |
|
| 2013 |
Sloan DB, Bennett GM, Engel P, Williams D, Ochman H. Disentangling associated genomes. Methods in Enzymology. 531: 445-64. PMID 24060132 DOI: 10.1016/B978-0-12-407863-5.00020-4 |
0.463 |
|
| 2013 |
Moeller AH, Ochman H. Factors that drive variation among gut microbial communities. Gut Microbes. 4: 403-8. PMID 23941900 DOI: 10.4161/Gmic.26039 |
0.341 |
|
| 2013 |
Williams D, Trimble WL, Shilts M, Meyer F, Ochman H. Rapid quantification of sequence repeats to resolve the size, structure and contents of bacterial genomes. Bmc Genomics. 14: 537. PMID 23924250 DOI: 10.1186/1471-2164-14-537 |
0.48 |
|
| 2013 |
Moeller AH, Peeters M, Ndjango JB, Li Y, Hahn BH, Ochman H. Sympatric chimpanzees and gorillas harbor convergent gut microbial communities. Genome Research. 23: 1715-20. PMID 23804402 DOI: 10.1101/Gr.154773.113 |
0.403 |
|
| 2013 |
Kelkar YD, Ochman H. Genome reduction promotes increase in protein functional complexity in bacteria. Genetics. 193: 303-7. PMID 23114380 DOI: 10.1534/Genetics.112.145656 |
0.471 |
|
| 2013 |
Goodman AL, Ochman H. Reviews and Resources Microbe Magazine. 8: 336-336. DOI: 10.1128/Microbe.8.336.1 |
0.465 |
|
| 2012 |
Moeller AH, Degnan PH, Pusey AE, Wilson ML, Hahn BH, Ochman H. Chimpanzees and humans harbour compositionally similar gut enterotypes. Nature Communications. 3: 1179. PMID 23149725 DOI: 10.1038/Ncomms2159 |
0.681 |
|
| 2012 |
Raghavan R, Kelkar YD, Ochman H. A selective force favoring increased G+C content in bacterial genes. Proceedings of the National Academy of Sciences of the United States of America. 109: 14504-7. PMID 22908296 DOI: 10.1073/Pnas.1205683109 |
0.443 |
|
| 2012 |
Raghavan R, Sloan DB, Ochman H. Antisense transcription is pervasive but rarely conserved in enteric bacteria. Mbio. 3. PMID 22872780 DOI: 10.1128/Mbio.00156-12 |
0.462 |
|
| 2012 |
Degnan PH, Pusey AE, Lonsdorf EV, Goodall J, Wroblewski EE, Wilson ML, Rudicell RS, Hahn BH, Ochman H. Factors associated with the diversification of the gut microbial communities within chimpanzees from Gombe National Park. Proceedings of the National Academy of Sciences of the United States of America. 109: 13034-9. PMID 22826227 DOI: 10.1073/Pnas.1110994109 |
0.684 |
|
| 2012 |
Kelkar YD, Ochman H. Causes and consequences of genome expansion in fungi. Genome Biology and Evolution. 4: 13-23. PMID 22117086 DOI: 10.1093/Gbe/Evr124 |
0.459 |
|
| 2012 |
Degnan PH, Ochman H. Illumina-based analysis of microbial community diversity. The Isme Journal. 6: 183-94. PMID 21677692 DOI: 10.1038/Ismej.2011.74 |
0.703 |
|
| 2011 |
Degnan PH, Ochman H, Moran NA. Sequence conservation and functional constraint on intergenic spacers in reduced genomes of the obligate symbiont Buchnera. Plos Genetics. 7: e1002252. PMID 21912528 DOI: 10.1371/Journal.Pgen.1002252 |
0.773 |
|
| 2011 |
Raghavan R, Groisman EA, Ochman H. Genome-wide detection of novel regulatory RNAs in E. coli. Genome Research. 21: 1487-97. PMID 21665928 DOI: 10.1101/Gr.119370.110 |
0.427 |
|
| 2011 |
Raghavan R, Sage A, Ochman H. Genome-wide identification of transcription start sites yields a novel thermosensing RNA and new cyclic AMP receptor protein-regulated genes in Escherichia coli. Journal of Bacteriology. 193: 2871-4. PMID 21460078 DOI: 10.1128/Jb.00398-11 |
0.386 |
|
| 2010 |
Ochman H, Worobey M, Kuo CH, Ndjango JB, Peeters M, Hahn BH, Hugenholtz P. Evolutionary relationships of wild hominids recapitulated by gut microbial communities. Plos Biology. 8: e1000546. PMID 21103409 DOI: 10.1371/Journal.Pbio.1000546 |
0.562 |
|
| 2010 |
Kuo CH, Ochman H. The extinction dynamics of bacterial pseudogenes. Plos Genetics. 6. PMID 20700439 DOI: 10.1371/Journal.Pgen.1001050 |
0.621 |
|
| 2010 |
Engelbrektson A, Kunin V, Wrighton KC, Zvenigorodsky N, Chen F, Ochman H, Hugenholtz P. Experimental factors affecting PCR-based estimates of microbial species richness and evenness. The Isme Journal. 4: 642-7. PMID 20090784 DOI: 10.1038/Ismej.2009.153 |
0.379 |
|
| 2010 |
Jarvik T, Smillie C, Groisman EA, Ochman H. Short-term signatures of evolutionary change in the Salmonella enterica serovar typhimurium 14028 genome. Journal of Bacteriology. 192: 560-7. PMID 19897643 DOI: 10.1128/Jb.01233-09 |
0.451 |
|
| 2010 |
Stavrinides J, No A, Ochman H. A single genetic locus in the phytopathogen Pantoea stewartii enables gut colonization and pathogenicity in an insect host. Environmental Microbiology. 12: 147-55. PMID 19788413 DOI: 10.1111/J.1462-2920.2009.02056.X |
0.403 |
|
| 2010 |
Kunin V, Engelbrektson A, Ochman H, Hugenholtz P. Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environmental Microbiology. 12: 118-23. PMID 19725865 DOI: 10.1111/J.1462-2920.2009.02051.X |
0.336 |
|
| 2009 |
Kuo CH, Ochman H. Deletional bias across the three domains of life. Genome Biology and Evolution. 1: 145-52. PMID 20333185 DOI: 10.1093/Gbe/Evp016 |
0.608 |
|
| 2009 |
Ochman H, Raghavan R. Systems biology. Excavating the functional landscape of bacterial cells. Science (New York, N.Y.). 326: 1200-1. PMID 19965458 DOI: 10.1126/Science.1183757 |
0.426 |
|
| 2009 |
Kuo CH, Ochman H. Inferring clocks when lacking rocks: the variable rates of molecular evolution in bacteria. Biology Direct. 4: 35. PMID 19788732 DOI: 10.1186/1745-6150-4-35 |
0.619 |
|
| 2009 |
Kuo CH, Moran NA, Ochman H. The consequences of genetic drift for bacterial genome complexity. Genome Research. 19: 1450-4. PMID 19502381 DOI: 10.1101/Gr.091785.109 |
0.715 |
|
| 2009 |
Ochman H. Radical views of the tree of life. Environmental Microbiology. 11: 731-2. PMID 19236444 DOI: 10.1111/J.1462-2920.2009.01895.X |
0.375 |
|
| 2009 |
Stavrinides J, McCloskey JK, Ochman H. Pea aphid as both host and vector for the phytopathogenic bacterium Pseudomonas syringae. Applied and Environmental Microbiology. 75: 2230-5. PMID 19201955 DOI: 10.1128/Aem.02860-08 |
0.384 |
|
| 2009 |
Kuo CH, Ochman H. The fate of new bacterial genes. Fems Microbiology Reviews. 33: 38-43. PMID 19054121 DOI: 10.1111/J.1574-6976.2008.00140.X |
0.66 |
|
| 2009 |
Ochman H. Afterword: Genomics Update update Environmental Microbiology. 11: 2193-2193. DOI: 10.1111/J.1462-2920.2009.02040.X |
0.425 |
|
| 2008 |
Narra HP, Cordes MH, Ochman H. Structural features and the persistence of acquired proteins. Proteomics. 8: 4772-81. PMID 18924109 DOI: 10.1002/Pmic.200800061 |
0.431 |
|
| 2008 |
Marri PR, Harris LK, Houmiel K, Slater SC, Ochman H. The effect of chromosome geometry on genetic diversity. Genetics. 179: 511-6. PMID 18493068 DOI: 10.1534/Genetics.107.085621 |
0.36 |
|
| 2008 |
van Passel MW, Marri PR, Ochman H. The emergence and fate of horizontally acquired genes in Escherichia coli. Plos Computational Biology. 4: e1000059. PMID 18404206 DOI: 10.1371/Journal.Pcbi.1000059 |
0.458 |
|
| 2007 |
van Passel MW, Ochman H. Selection on the genic location of disruptive elements. Trends in Genetics : Tig. 23: 601-4. PMID 17996324 DOI: 10.1016/J.Tig.2007.08.017 |
0.36 |
|
| 2007 |
Liu R, Ochman H. Origins of flagellar gene operons and secondary flagellar systems. Journal of Bacteriology. 189: 7098-104. PMID 17644605 DOI: 10.1128/Jb.00643-07 |
0.412 |
|
| 2007 |
Liu R, Ochman H. Stepwise formation of the bacterial flagellar system. Proceedings of the National Academy of Sciences of the United States of America. 104: 7116-21. PMID 17438286 DOI: 10.1073/Pnas.0700266104 |
0.499 |
|
| 2007 |
van Passel MW, Smillie CS, Ochman H. Gene decay in archaea. Archaea (Vancouver, B.C.). 2: 137-43. PMID 17350934 DOI: 10.1155/2007/165723 |
0.524 |
|
| 2007 |
Ochman H. Single-cell genomics. Environmental Microbiology. 9: 7. PMID 17227404 DOI: 10.1111/J.1462-2920.2006.01222_6.X |
0.395 |
|
| 2007 |
Ochman H, Liu R, Rocha EP. Erosion of interaction networks in reduced and degraded genomes. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 308: 97-103. PMID 17219366 DOI: 10.1002/Jez.B.21147 |
0.39 |
|
| 2006 |
Narra HP, Ochman H. Of what use is sex to bacteria? Current Biology : Cb. 16: R705-10. PMID 16950097 DOI: 10.1016/J.Cub.2006.08.024 |
0.462 |
|
| 2006 |
Wirth T, Falush D, Lan R, Colles F, Mensa P, Wieler LH, Karch H, Reeves PR, Maiden MC, Ochman H, Achtman M. Sex and virulence in Escherichia coli: an evolutionary perspective. Molecular Microbiology. 60: 1136-51. PMID 16689791 DOI: 10.1111/J.1365-2958.2006.05172.X |
0.461 |
|
| 2006 |
Ochman H, Davalos LM. The nature and dynamics of bacterial genomes. Science (New York, N.Y.). 311: 1730-3. PMID 16556833 DOI: 10.1126/Science.1119966 |
0.525 |
|
| 2005 |
Dale C, Dunbar H, Moran NA, Ochman H. Extracting single genomes from heterogenous DNA samples: a test case with Carsonella ruddii, the bacterial symbiont of psyllids (Insecta). Journal of Insect Science (Online). 5: 3. PMID 16299593 DOI: 10.1093/Jis/5.1.3 |
0.603 |
|
| 2005 |
Moran NA, Degnan PH, Santos SR, Dunbar HE, Ochman H. The players in a mutualistic symbiosis: insects, bacteria, viruses, and virulence genes. Proceedings of the National Academy of Sciences of the United States of America. 102: 16919-26. PMID 16195380 DOI: 10.1073/Pnas.0507029102 |
0.78 |
|
| 2005 |
Ochman H. Genomes on the shrink. Proceedings of the National Academy of Sciences of the United States of America. 102: 11959-60. PMID 16105941 DOI: 10.1073/Pnas.0505863102 |
0.515 |
|
| 2005 |
Lerat E, Ochman H. Recognizing the pseudogenes in bacterial genomes. Nucleic Acids Research. 33: 3125-32. PMID 15933207 DOI: 10.1093/Nar/Gki631 |
0.535 |
|
| 2005 |
Ochman H, Lerat E, Daubin V. Examining bacterial species under the specter of gene transfer and exchange. Proceedings of the National Academy of Sciences of the United States of America. 102: 6595-9. PMID 15851673 DOI: 10.1073/Pnas.0502035102 |
0.502 |
|
| 2005 |
Lerat E, Daubin V, Ochman H, Moran NA. Evolutionary origins of genomic repertoires in bacteria. Plos Biology. 3: e130. PMID 15799709 DOI: 10.1371/Journal.Pbio.0030130 |
0.65 |
|
| 2005 |
Ochman H, Daubin V, Lerat E. A bunch of fun-guys: the whole-genome view of yeast evolution. Trends in Genetics : Tig. 21: 1-3. PMID 15680504 DOI: 10.1016/J.Tig.2004.11.006 |
0.514 |
|
| 2005 |
Ochman H, Santos SR. Exploring microbial microevolution with microarrays. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 5: 103-8. PMID 15639741 DOI: 10.1016/J.Meegid.2004.09.002 |
0.487 |
|
| 2004 |
Daubin V, Ochman H. Start-up entities in the origin of new genes. Current Opinion in Genetics & Development. 14: 616-9. PMID 15531155 DOI: 10.1016/J.Gde.2004.09.004 |
0.439 |
|
| 2004 |
Lerat E, Ochman H. Psi-Phi: exploring the outer limits of bacterial pseudogenes. Genome Research. 14: 2273-8. PMID 15479949 DOI: 10.1101/Gr.2925604 |
0.549 |
|
| 2004 |
Santos SR, Ochman H. Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins. Environmental Microbiology. 6: 754-9. PMID 15186354 DOI: 10.1111/J.1462-2920.2004.00617.X |
0.49 |
|
| 2004 |
Daubin V, Ochman H. Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli. Genome Research. 14: 1036-42. PMID 15173110 DOI: 10.1101/Gr.2231904 |
0.533 |
|
| 2004 |
Daubin V, Ochman H. Quartet mapping and the extent of lateral transfer in bacterial genomes. Molecular Biology and Evolution. 21: 86-9. PMID 12949130 DOI: 10.1093/Molbev/Msg234 |
0.436 |
|
| 2003 |
Ochman H. Neutral mutations and neutral substitutions in bacterial genomes. Molecular Biology and Evolution. 20: 2091-6. PMID 12949125 DOI: 10.1093/Molbev/Msg229 |
0.371 |
|
| 2003 |
Daubin V, Moran NA, Ochman H. Phylogenetics and the cohesion of bacterial genomes. Science (New York, N.Y.). 301: 829-32. PMID 12907801 DOI: 10.1126/Science.1086568 |
0.643 |
|
| 2003 |
Dale C, Wang B, Moran N, Ochman H. Loss of DNA recombinational repair enzymes in the initial stages of genome degeneration. Molecular Biology and Evolution. 20: 1188-94. PMID 12777518 DOI: 10.1093/Molbev/Msg138 |
0.665 |
|
| 2003 |
Ochman H, Santos SR. Eyeing bacterial genomes. Current Opinion in Microbiology. 6: 109-13. PMID 12732298 DOI: 10.1016/S1369-5274(03)00031-6 |
0.448 |
|
| 2003 |
Moran NA, Dale C, Dunbar H, Smith WA, Ochman H. Intracellular symbionts of sharpshooters (Insecta: Hemiptera: Cicadellinae) form a distinct clade with a small genome. Environmental Microbiology. 5: 116-26. PMID 12558594 DOI: 10.1046/J.1462-2920.2003.00391.X |
0.646 |
|
| 2002 |
Dale C, Plague GR, Wang B, Ochman H, Moran NA. Type III secretion systems and the evolution of mutualistic endosymbiosis. Proceedings of the National Academy of Sciences of the United States of America. 99: 12397-402. PMID 12213957 DOI: 10.1073/Pnas.182213299 |
0.599 |
|
| 2002 |
Mira A, Ochman H. Gene location and bacterial sequence divergence. Molecular Biology and Evolution. 19: 1350-8. PMID 12140247 DOI: 10.1093/Oxfordjournals.Molbev.A004196 |
0.496 |
|
| 2002 |
Ochman H. Distinguishing the ORFs from the ELFs: short bacterial genes and the annotation of genomes. Trends in Genetics : Tig. 18: 335-7. PMID 12127765 DOI: 10.1016/S0168-9525(02)02668-9 |
0.515 |
|
| 2002 |
Ochman H. Bacterial evolution: chromosome arithmetic and geometry. Current Biology : Cb. 12: R427-8. PMID 12123594 DOI: 10.1016/S0960-9822(02)00916-8 |
0.442 |
|
| 2002 |
Lawrence JG, Ochman H. Reconciling the many faces of lateral gene transfer. Trends in Microbiology. 10: 1-4. PMID 11755071 DOI: 10.1016/S0966-842X(01)02282-X |
0.377 |
|
| 2002 |
Hudson RE, Bergthorsson U, Roth JR, Ochman H. Effect of chromosome location on bacterial mutation rates. Molecular Biology and Evolution. 19: 85-92. PMID 11752193 DOI: 10.1093/Oxfordjournals.Molbev.A003986 |
0.306 |
|
| 2001 |
Ochman H. Lateral and oblique gene transfer. Current Opinion in Genetics & Development. 11: 616-9. PMID 11682303 DOI: 10.1016/S0959-437X(00)00243-4 |
0.484 |
|
| 2001 |
Mira A, Ochman H, Moran NA. Deletional bias and the evolution of bacterial genomes. Trends in Genetics : Tig. 17: 589-96. PMID 11585665 DOI: 10.1016/S0168-9525(01)02447-7 |
0.667 |
|
| 2001 |
Francino MP, Ochman H. Deamination as the basis of strand-asymmetric evolution in transcribed Escherichia coli sequences. Molecular Biology and Evolution. 18: 1147-50. PMID 11371605 DOI: 10.1093/Oxfordjournals.Molbev.A003888 |
0.412 |
|
| 2001 |
Ochman H, Moran NA. Genes lost and genes found: evolution of bacterial pathogenesis and symbiosis. Science (New York, N.Y.). 292: 1096-9. PMID 11352062 DOI: 10.1126/Science.1058543 |
0.663 |
|
| 2000 |
Ochman H, Jones IB. Evolutionary dynamics of full genome content in Escherichia coli. The Embo Journal. 19: 6637-43. PMID 11118198 DOI: 10.1093/Emboj/19.24.6637 |
0.435 |
|
| 2000 |
Houndt T, Ochman H. Long-term shifts in patterns of antibiotic resistance in enteric bacteria. Applied and Environmental Microbiology. 66: 5406-9. PMID 11097921 DOI: 10.1128/Aem.66.12.5406-5409.2000 |
0.308 |
|
| 2000 |
Wernegreen JJ, Ochman H, Jones IB, Moran NA. Decoupling of genome size and sequence divergence in a symbiotic bacterium. Journal of Bacteriology. 182: 3867-9. PMID 10851009 DOI: 10.1128/Jb.182.13.3867-3869.2000 |
0.624 |
|
| 2000 |
Ochman H, Lawrence JG, Groisman EA. Lateral gene transfer and the nature of bacterial innovation. Nature. 405: 299-304. PMID 10830951 DOI: 10.1038/35012500 |
0.496 |
|
| 2000 |
Francino MP, Ochman H. Strand symmetry around the beta-globin origin of replication in primates. Molecular Biology and Evolution. 17: 416-22. PMID 10723742 DOI: 10.1093/Oxfordjournals.Molbev.A026321 |
0.319 |
|
| 1999 |
Ochman H, Elwyn S, Moran NA. Calibrating bacterial evolution. Proceedings of the National Academy of Sciences of the United States of America. 96: 12638-43. PMID 10535975 DOI: 10.1073/Pnas.96.22.12638 |
0.594 |
|
| 1999 |
Francino MP, Ochman H. A comparative genomics approach to DNA asymmetry. Annals of the New York Academy of Sciences. 870: 428-31. PMID 10415514 DOI: 10.1111/J.1749-6632.1999.Tb08919.X |
0.38 |
|
| 1999 |
Francino MP, Ochman H. Isochores result from mutation not selection. Nature. 400: 30-1. PMID 10403245 DOI: 10.1038/21804 |
0.382 |
|
| 1999 |
Ochman H. Bacterial evolution: Jittery genomes. Current Biology : Cb. 9: R485-6. PMID 10395532 DOI: 10.1016/S0960-9822(99)80302-9 |
0.459 |
|
| 1999 |
Bergthorsson U, Ochman H. Chromosomal changes during experimental evolution in laboratory populations of Escherichia coli. Journal of Bacteriology. 181: 1360-3. PMID 9973369 DOI: 10.1128/Jb.181.4.1360-1363.1999 |
0.301 |
|
| 1999 |
Ochman H. Genomics: Editorial Current Opinion in Microbiology. 2: 517-518. DOI: 10.1016/S1369-5274(99)00018-1 |
0.427 |
|
| 1999 |
Ochman H. Genomics: Editorial Current Opinion in Microbiology. 2: 517-518. DOI: 10.1016/S1369-5274(99)00018-1 |
0.317 |
|
| 1998 |
Ochman H, Bergthorsson U. Rates and patterns of chromosome evolution in enteric bacteria. Current Opinion in Microbiology. 1: 580-3. PMID 10066521 DOI: 10.1016/S1369-5274(98)80092-1 |
0.484 |
|
| 1998 |
Lawrence JG, Ochman H. Molecular archaeology of the Escherichia coli genome. Proceedings of the National Academy of Sciences of the United States of America. 95: 9413-7. PMID 9689094 DOI: 10.1073/Pnas.95.16.9413 |
0.508 |
|
| 1998 |
Bergthorsson U, Ochman H. Distribution of chromosome length variation in natural isolates of Escherichia coli. Molecular Biology and Evolution. 15: 6-16. PMID 9491600 DOI: 10.1093/Oxfordjournals.Molbev.A025847 |
0.384 |
|
| 1997 |
Groisman EA, Ochman H. How Salmonella became a pathogen. Trends in Microbiology. 5: 343-9. PMID 9294889 DOI: 10.1016/S0966-842X(97)01099-8 |
0.484 |
|
| 1997 |
Francino MP, Ochman H. Strand asymmetries in DNA evolution. Trends in Genetics : Tig. 13: 240-5. PMID 9196330 DOI: 10.1016/S0168-9525(97)01118-9 |
0.373 |
|
| 1997 |
Lawrence JG, Ochman H. Amelioration of bacterial genomes: rates of change and exchange. Journal of Molecular Evolution. 44: 383-97. PMID 9089078 DOI: 10.1007/Pl00006158 |
0.5 |
|
| 1997 |
Boyd EF, Li J, Ochman H, Selander RK. Comparative genetics of the inv-spa invasion gene complex of Salmonella enterica. Journal of Bacteriology. 179: 1985-91. PMID 9068645 |
0.301 |
|
| 1996 |
Ochman H, Groisman EA. Distribution of pathogenicity islands in Salmonella spp. Infection and Immunity. 64: 5410-2. PMID 8945597 DOI: 10.1128/Iai.64.12.5410-5412.1996 |
0.326 |
|
| 1996 |
Groisman EA, Ochman H. Pathogenicity islands: bacterial evolution in quantum leaps. Cell. 87: 791-4. PMID 8945505 DOI: 10.1016/S0092-8674(00)81985-6 |
0.477 |
|
| 1996 |
Ochman H, Soncini FC, Solomon F, Groisman EA. Identification of a pathogenicity island required for Salmonella survival in host cells. Proceedings of the National Academy of Sciences of the United States of America. 93: 7800-4. PMID 8755556 DOI: 10.1073/Pnas.93.15.7800 |
0.371 |
|
| 1996 |
Francino MP, Chao L, Riley MA, Ochman H. Asymmetries generated by transcription-coupled repair in enterobacterial genes. Science (New York, N.Y.). 272: 107-9. PMID 8600517 DOI: 10.1126/Science.272.5258.107 |
0.333 |
|
| 1995 |
Ochman H, Bergthorsson U. Genome evolution in enteric bacteria. Current Opinion in Genetics & Development. 5: 734-8. PMID 8745071 DOI: 10.1016/0959-437X(95)80005-P |
0.49 |
|
| 1995 |
Ochman H, Buckholtz LA. Physical structure of human chromosome 21: an analysis of YACs spanning 21q. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 6: 84-9. PMID 7767010 DOI: 10.1007/Bf00303249 |
0.322 |
|
| 1995 |
Ochman H, Groisman EA. The evolution of invasion by enteric bacteria. Canadian Journal of Microbiology. 41: 555-61. PMID 7641138 DOI: 10.1139/M95-074 |
0.464 |
|
| 1995 |
Li J, Ochman H, Groisman EA, Boyd EF, Solomon F, Nelson K, Selander RK. Relationship between evolutionary rate and cellular location among the Inv/Spa invasion proteins of Salmonella enterica. Proceedings of the National Academy of Sciences of the United States of America. 92: 7252-6. PMID 7638176 DOI: 10.1073/Pnas.92.16.7252 |
0.457 |
|
| 1995 |
Bergthorsson U, Ochman H. Heterogeneity of genome sizes among natural isolates of Escherichia coli. Journal of Bacteriology. 177: 5784-9. PMID 7592324 DOI: 10.1128/Jb.177.20.5784-5789.1995 |
0.454 |
|
| 1994 |
Ochman H, Groisman EA. The origin and evolution of species differences in Escherichia coli and Salmonella typhimurium. Exs. 69: 479-93. PMID 7994120 DOI: 10.1007/978-3-0348-7527-1_27 |
0.384 |
|
| 1994 |
Groisman EA, Ochman H. How to become a pathogen. Trends in Microbiology. 2: 289-94. PMID 7981972 DOI: 10.1016/0966-842X(94)90006-X |
0.445 |
|
| 1993 |
Lawrence JG, Hartl DL, Ochman H. Sequencing products of polymerase chain reaction. Methods in Enzymology. 218: 26-35. PMID 8510537 DOI: 10.1016/0076-6879(93)18005-W |
0.33 |
|
| 1993 |
Groisman EA, Sturmoski MA, Solomon FR, Lin R, Ochman H. Molecular, functional, and evolutionary analysis of sequences specific to Salmonella. Proceedings of the National Academy of Sciences of the United States of America. 90: 1033-7. PMID 8430070 DOI: 10.1073/Pnas.90.3.1033 |
0.48 |
|
| 1993 |
Groisman EA, Ochman H. Cognate gene clusters govern invasion of host epithelial cells by Salmonella typhimurium and Shigella flexneri. The Embo Journal. 12: 3779-87. PMID 8404849 DOI: 10.1002/J.1460-2075.1993.Tb06056.X |
0.426 |
|
| 1993 |
Ochman H, Ayala FJ, Hartl DL. Use of polymerase chain reaction to amplify segments outside boundaries of known sequences Methods in Enzymology. 218: 309-321. PMID 8389965 DOI: 10.1016/0076-6879(93)18023-6 |
0.324 |
|
| 1993 |
Carulli JP, Krane DE, Hartl DL, Ochman H. Compositional heterogeneity and patterns of molecular evolution in the Drosophila genome. Genetics. 134: 837-45. PMID 8349114 |
0.338 |
|
| 1993 |
Biserci? M, Ochman H. The ancestry of insertion sequences common to Escherichia coli and Salmonella typhimurium. Journal of Bacteriology. 175: 7863-8. PMID 8253675 DOI: 10.1128/Jb.175.24.7863-7868.1993 |
0.416 |
|
| 1992 |
Groisman EA, Saier MH, Ochman H. Horizontal transfer of a phosphatase gene as evidence for mosaic structure of the Salmonella genome Embo Journal. 11: 1309-1316. PMID 1339343 |
0.385 |
|
| 1992 |
Lawrence JG, Ochman H, Hartl DL. The evolution of insertion sequences within enteric bacteria. Genetics. 131: 9-20. PMID 1317318 |
0.36 |
|
| 1992 |
Groisman E, Saier M, Ochman H. Horizontal transfer of a phosphatase gene as evidence for mosaic structure of the Salmonella genome. The Embo Journal. 11: 1309-1316. DOI: 10.1002/J.1460-2075.1992.Tb05175.X |
0.385 |
|
| 1991 |
Lawrence JG, Ochman H, Hartl DL. Molecular and evolutionary relationships among enteric bacteria. Journal of General Microbiology. 137: 1911-21. PMID 1955870 DOI: 10.1099/00221287-137-8-1911 |
0.445 |
|
| 1991 |
Krane DE, Hartl DL, Ochman H. Rapid determination of nucleotide content and its application to the study of genome structure Nucleic Acids Research. 19: 5181-5185. PMID 1833723 DOI: 10.1093/Nar/19.19.5181 |
0.435 |
|
| 1991 |
Lawrence JG, Hartl DL, Ochman H. Molecular considerations in the evolution of bacterial genes. Journal of Molecular Evolution. 33: 241-50. PMID 1757995 DOI: 10.1007/Bf02100675 |
0.442 |
|
| 1990 |
Ochman H, Ajioka JW, Garza D, Hartl DL. Inverse polymerase chain reaction. Bio/Technology (Nature Publishing Company). 8: 759-60. PMID 1366903 DOI: 10.1038/Nbt0890-759 |
0.317 |
|
| 1987 |
Ochman H, Wilson AC. Evolution in bacteria: evidence for a universal substitution rate in cellular genomes. Journal of Molecular Evolution. 26: 74-86. PMID 3125340 DOI: 10.1007/Bf02111283 |
0.568 |
|
| 1987 |
Wilson AC, Ochman H, Prager EM. Molecular time scale for evolution Trends in Genetics. 3: 241-247. DOI: 10.1016/0168-9525(87)90257-5 |
0.719 |
|
| 1984 |
Ochman H, Selander RK. Evidence for clonal population structure in Escherichia coli Proceedings of the National Academy of Sciences of the United States of America. 81: 198-201. PMID 6364134 DOI: 10.1073/Pnas.81.1.198 |
0.326 |
|
| 1984 |
Ochman H, Selander RK. Standard reference strains of Escherichia coli from natural populations Journal of Bacteriology. 157: 690-693. PMID 6363394 DOI: 10.1128/Jb.157.2.690-693.1984 |
0.317 |
|
| 1983 |
Whittam TS, Ochman H, Selander RK. Geographic components of linkage disequilibrium in natural populations of Escherichia coli Molecular Biology and Evolution. 1: 67-83. PMID 6400648 DOI: 10.1093/Oxfordjournals.Molbev.A040302 |
0.307 |
|
| 1983 |
Ochman H, Whittam TS, Caugant DA, Selander RK. Enzyme polymorphism and genetic population structure in Escherichia coli and Shigella Journal of General Microbiology. 129: 2715-2726. PMID 6355392 DOI: 10.1099/00221287-129-9-2715 |
0.345 |
|
| 1983 |
Whittam TS, Ochman H, Selander RK. Multilocus genetic structure in natural populations of Escherichia coli Proceedings of the National Academy of Sciences of the United States of America. 80: 1751-1755. PMID 6340107 DOI: 10.1073/Pnas.80.6.1751 |
0.339 |
|
| 1980 |
Ochman H, Stille B, Niklasson M, Selander RK, Templeton AR. EVOLUTION OF CLONAL DIVERSITY IN THE PARTHENOGENETIC FLY LONCHOPTERA DUBIA. Evolution; International Journal of Organic Evolution. 34: 539-547. PMID 28568684 DOI: 10.1111/J.1558-5646.1980.Tb04842.X |
0.319 |
|
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